{"id":"https://openalex.org/W1999820454","doi":"https://doi.org/10.1021/ci100209a","title":"From Structure Diagrams to Visual Chemical Patterns","display_name":"From Structure Diagrams to Visual Chemical Patterns","publication_year":2010,"publication_date":"2010-08-26","ids":{"openalex":"https://openalex.org/W1999820454","doi":"https://doi.org/10.1021/ci100209a","mag":"1999820454","pmid":"https://pubmed.ncbi.nlm.nih.gov/20795706"},"language":"en","primary_location":{"id":"doi:10.1021/ci100209a","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci100209a","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072061134","display_name":"Karen T. Schomburg","orcid":null},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Karen Schomburg","raw_affiliation_strings":["Research Group for Computational Molecular Design, Center for Bioinformatics, University of Hamburg, Bundesstrasse 43, D-20146 Hamburg, Germany"],"affiliations":[{"raw_affiliation_string":"Research Group for Computational Molecular Design, Center for Bioinformatics, University of Hamburg, Bundesstrasse 43, D-20146 Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072560776","display_name":"Hans\u2010Christian Ehrlich","orcid":"https://orcid.org/0000-0001-5866-5433"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hans-Christian Ehrlich","raw_affiliation_strings":["Research Group for Computational Molecular Design, Center for Bioinformatics, University of Hamburg, Bundesstrasse 43, D-20146 Hamburg, Germany"],"affiliations":[{"raw_affiliation_string":"Research Group for Computational Molecular Design, Center for Bioinformatics, University of Hamburg, Bundesstrasse 43, D-20146 Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016538485","display_name":"Katrin Stierand","orcid":"https://orcid.org/0000-0003-3248-8023"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Katrin Stierand","raw_affiliation_strings":["Research Group for Computational Molecular Design, Center for Bioinformatics, University of Hamburg, Bundesstrasse 43, D-20146 Hamburg, Germany"],"affiliations":[{"raw_affiliation_string":"Research Group for Computational Molecular Design, Center for Bioinformatics, University of Hamburg, Bundesstrasse 43, D-20146 Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083205378","display_name":"Matthias Rarey","orcid":"https://orcid.org/0000-0002-9553-6531"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Matthias Rarey","raw_affiliation_strings":["Research Group for Computational Molecular Design, Center for Bioinformatics, University of Hamburg, Bundesstrasse 43, D-20146 Hamburg, Germany"],"affiliations":[{"raw_affiliation_string":"Research Group for Computational Molecular Design, Center for Bioinformatics, University of Hamburg, Bundesstrasse 43, D-20146 Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5072061134"],"corresponding_institution_ids":["https://openalex.org/I159176309"],"apc_list":null,"apc_paid":null,"fwci":5.4925,"has_fulltext":false,"cited_by_count":75,"citation_normalized_percentile":{"value":0.96228976,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"50","issue":"9","first_page":"1529","last_page":"1535"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.980400025844574,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9624999761581421,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7042807340621948},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6780428290367126},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.6508646011352539},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5563896894454956},{"id":"https://openalex.org/keywords/property","display_name":"Property (philosophy)","score":0.5178168416023254},{"id":"https://openalex.org/keywords/range","display_name":"Range (aeronautics)","score":0.4446500241756439},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.39806386828422546},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3853073716163635},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15680471062660217}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7042807340621948},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6780428290367126},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.6508646011352539},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5563896894454956},{"id":"https://openalex.org/C189950617","wikidata":"https://www.wikidata.org/wiki/Q937228","display_name":"Property (philosophy)","level":2,"score":0.5178168416023254},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.4446500241756439},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.39806386828422546},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3853073716163635},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15680471062660217},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1021/ci100209a","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci100209a","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:20795706","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20795706","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:www.openagrar.de:timport_mods_00038289","is_oa":false,"landing_page_url":"https://doi.org/DOI:10.1021/ci100209a","pdf_url":null,"source":{"id":"https://openalex.org/S7407055137","display_name":"OpenAgrar","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"doc-type:article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6700000166893005,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W1975147762","https://openalex.org/W1991286793","https://openalex.org/W1999711931","https://openalex.org/W2017702218","https://openalex.org/W2019584771","https://openalex.org/W2041686943","https://openalex.org/W2049654081","https://openalex.org/W2050654179","https://openalex.org/W2068176326","https://openalex.org/W2075307413","https://openalex.org/W2077326817","https://openalex.org/W2085587362","https://openalex.org/W2089248273","https://openalex.org/W2094568831","https://openalex.org/W2112844927","https://openalex.org/W2117057011","https://openalex.org/W2127926874","https://openalex.org/W2129683878","https://openalex.org/W2142309820","https://openalex.org/W2148842928","https://openalex.org/W2152310811","https://openalex.org/W2155694669","https://openalex.org/W2200866600","https://openalex.org/W2205915548","https://openalex.org/W2218526232","https://openalex.org/W2950062052","https://openalex.org/W4230648839","https://openalex.org/W4241340883"],"related_works":["https://openalex.org/W2068608913","https://openalex.org/W3124914020","https://openalex.org/W2141033859","https://openalex.org/W2077542787","https://openalex.org/W2156434174","https://openalex.org/W2071701083","https://openalex.org/W2383687187","https://openalex.org/W2070401501","https://openalex.org/W2121496884","https://openalex.org/W2387910809"],"abstract_inverted_index":{"The":[0,13,58,95,143],"intuitive":[1],"way":[2],"of":[3,43,51,99,112,121,150,180],"chemists":[4,77],"to":[5,20,64,104,139,160],"communicate":[6],"molecules":[7,52],"is":[8,53,102],"via":[9],"two-dimensional":[10],"structure":[11,100],"diagrams.":[12],"straightforward":[14],"visual":[15,141],"representations":[16,61],"are":[17,46,62,70],"mostly":[18],"preferred":[19],"the":[21,122,127,151,162,176],"often":[22,163],"complicated":[23],"systematic":[24],"chemical":[25,28,44,93,113,133,153,169,183],"names.":[26],"For":[27],"patterns,":[29],"however,":[30],"no":[31],"comparable":[32],"visualization":[33,90],"standards":[34],"have":[35],"evolved":[36],"so":[37],"far.":[38],"Chemical":[39],"patterns":[40,134],"denoting":[41],"descriptions":[42,108],"features":[45,114],"needed":[47],"whenever":[48],"a":[49,88,118,129,140,181],"set":[50],"filtered":[54],"for":[55,92,106],"certain":[56],"properties.":[57],"currently":[59],"available":[60],"constrained":[63],"linear":[65,165],"molecular":[66],"pattern":[67,145,184],"languages":[68],"which":[69],"hardly":[71],"human":[72],"readable":[73],"and":[74,109,156],"therefore":[75],"keep":[76],"without":[78,158],"computational":[79],"background":[80],"from":[81,171],"systematically":[82],"formulating":[83],"patterns.":[84,94,116],"Therefore,":[85],"we":[86,125,174],"introduce":[87],"new":[89,123],"concept":[91,98],"common":[96],"standard":[97],"diagrams":[101],"extended":[103],"account":[105],"property":[107],"logic":[110],"combinations":[111],"in":[115,136],"As":[117],"first":[119],"application":[120,178],"concept,":[124],"developed":[126],"SMARTSviewer,":[128],"tool":[130],"that":[131],"converts":[132],"encoded":[135],"SMARTS":[137],"strings":[138],"representation.":[142],"graphic":[144],"depiction":[146],"provides":[147],"an":[148],"overview":[149],"specified":[152],"features,":[154],"variations,":[155],"similarities":[157],"needing":[159],"decode":[161],"cryptic":[164],"expressions.":[166],"Taking":[167],"recent":[168],"publications":[170],"various":[172],"fields,":[173],"demonstrate":[175],"wide":[177],"range":[179],"graphical":[182],"language.":[185]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":7}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
