{"id":"https://openalex.org/W1999727136","doi":"https://doi.org/10.1021/ci100204x","title":"Reducing Docking Score Variations Arising from Input Differences","display_name":"Reducing Docking Score Variations Arising from Input Differences","publication_year":2010,"publication_date":"2010-08-10","ids":{"openalex":"https://openalex.org/W1999727136","doi":"https://doi.org/10.1021/ci100204x","mag":"1999727136","pmid":"https://pubmed.ncbi.nlm.nih.gov/20698562"},"language":"en","primary_location":{"id":"doi:10.1021/ci100204x","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci100204x","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089389106","display_name":"Mikl\u00f3s Feh\u00e9r","orcid":"https://orcid.org/0000-0002-5817-6119"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Miklos Feher","raw_affiliation_strings":["Campbell Family Institute for Breast Cancer Research, University Health Network, Toronto Medical Discovery Tower, 101 College Street, Suite 5-361, Toronto, ON, M5G 1L7, Canada, and Chemical Computing Group, Suite 910, 1010 Sherbrooke St. W., Montreal, QC, H3A 2R7, Canada"],"affiliations":[{"raw_affiliation_string":"Campbell Family Institute for Breast Cancer Research, University Health Network, Toronto Medical Discovery Tower, 101 College Street, Suite 5-361, Toronto, ON, M5G 1L7, Canada, and Chemical Computing Group, Suite 910, 1010 Sherbrooke St. W., Montreal, QC, H3A 2R7, Canada","institution_ids":["https://openalex.org/I1325899441"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090376982","display_name":"Christopher I. Williams","orcid":null},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Christopher I. Williams","raw_affiliation_strings":["Campbell Family Institute for Breast Cancer Research, University Health Network, Toronto Medical Discovery Tower, 101 College Street, Suite 5-361, Toronto, ON, M5G 1L7, Canada, and Chemical Computing Group, Suite 910, 1010 Sherbrooke St. W., Montreal, QC, H3A 2R7, Canada"],"affiliations":[{"raw_affiliation_string":"Campbell Family Institute for Breast Cancer Research, University Health Network, Toronto Medical Discovery Tower, 101 College Street, Suite 5-361, Toronto, ON, M5G 1L7, Canada, and Chemical Computing Group, Suite 910, 1010 Sherbrooke St. W., Montreal, QC, H3A 2R7, Canada","institution_ids":["https://openalex.org/I1325899441"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5089389106"],"corresponding_institution_ids":["https://openalex.org/I1325899441"],"apc_list":null,"apc_paid":null,"fwci":2.5639,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.89204318,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"50","issue":"9","first_page":"1549","last_page":"1560"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12423","display_name":"Software Reliability and Analysis Research","score":0.9861999750137329,"subfield":{"id":"https://openalex.org/subfields/1712","display_name":"Software"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12423","display_name":"Software Reliability and Analysis Research","score":0.9861999750137329,"subfield":{"id":"https://openalex.org/subfields/1712","display_name":"Software"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11005","display_name":"Radiation Effects in Electronics","score":0.9682000279426575,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.8563495874404907},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4576846659183502},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.38677024841308594},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.32537734508514404},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14662951231002808},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.0762326717376709}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.8563495874404907},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4576846659183502},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.38677024841308594},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.32537734508514404},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14662951231002808},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0762326717376709},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/ci100204x","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci100204x","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:20698562","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20698562","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life below water","score":0.6499999761581421,"id":"https://metadata.un.org/sdg/14"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W162533270","https://openalex.org/W1560397137","https://openalex.org/W1975606737","https://openalex.org/W1983194490","https://openalex.org/W1986240377","https://openalex.org/W1990627326","https://openalex.org/W2013291622","https://openalex.org/W2026141986","https://openalex.org/W2032593188","https://openalex.org/W2051352867","https://openalex.org/W2067964076","https://openalex.org/W2071579644","https://openalex.org/W2077018271","https://openalex.org/W2077392616","https://openalex.org/W2093239283","https://openalex.org/W2111906305","https://openalex.org/W2121895929","https://openalex.org/W2145355174","https://openalex.org/W2147421370","https://openalex.org/W2161787349","https://openalex.org/W2162721376","https://openalex.org/W2949504121"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W2948807893","https://openalex.org/W2778153218","https://openalex.org/W2748952813","https://openalex.org/W1531601525","https://openalex.org/W2078814861","https://openalex.org/W2527526854","https://openalex.org/W1976181487","https://openalex.org/W1986764834","https://openalex.org/W657579294"],"abstract_inverted_index":{"The":[0,78,90],"variability":[1,108],"of":[2,8,39,82,85,92,118,130],"docking":[3,43,76],"results":[4,138],"as":[5,121,139],"a":[6,115],"function":[7],"variations":[9],"in":[10],"ligand":[11],"input":[12,53,119],"conformations":[13,120],"was":[14],"studied":[15],"for":[16,73,103,124],"the":[17,37,60,64,67,83,128,131,137,140],"GOLD,":[18],"Glide,":[19],"FlexX,":[20],"and":[21,44,109],"Surflex":[22],"programs.":[23],"It":[24,55],"is":[25,56,62,69,88,95],"concluded":[26],"that":[27,58],"there":[28],"are":[29,101],"two":[30],"major":[31],"effects":[32,47,87],"leading":[33],"to":[34,51,106],"such":[35],"variability:":[36],"adequacy":[38],"conformational":[40],"search":[41],"during":[42],"random":[45],"\"chaotic\"":[46],"arising":[48],"from":[49,136],"sensitivity":[50],"small":[52,116],"perturbations.":[54],"shown":[57],"although":[59],"former":[61],"generally":[63],"stronger":[65],"effect,":[66],"latter":[68],"also":[70],"highly":[71],"significant":[72],"almost":[74],"all":[75],"engines.":[77],"strong":[79],"target-to-target":[80],"variation":[81],"magnitude":[84],"these":[86,98],"emphasized.":[89],"performance":[91],"different":[93,104],"packages":[94],"compared":[96],"using":[97,114],"measures.":[99],"Guidelines":[100],"provided":[102],"programs":[105],"reduce":[107],"improve":[110],"reproducibility,":[111],"which":[112],"involve":[113],"number":[117],"starting":[122],"points":[123],"docking,":[125],"followed":[126],"by":[127],"selection":[129],"top":[132],"scoring":[133],"docked":[134,142],"pose":[135],"best":[141],"solution.":[143]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
