{"id":"https://openalex.org/W1981309130","doi":"https://doi.org/10.1021/ci100195t","title":"Comparative Analysis of Threshold and Tessellation Methods for Determining Protein Contacts","display_name":"Comparative Analysis of Threshold and Tessellation Methods for Determining Protein Contacts","publication_year":2011,"publication_date":"2011-01-12","ids":{"openalex":"https://openalex.org/W1981309130","doi":"https://doi.org/10.1021/ci100195t","mag":"1981309130","pmid":"https://pubmed.ncbi.nlm.nih.gov/21226523"},"language":"en","primary_location":{"id":"doi:10.1021/ci100195t","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci100195t","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://inserm.hal.science/inserm-00568174","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013295087","display_name":"J\u00e9r\u00e9my Esque","orcid":"https://orcid.org/0000-0002-5786-848X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210142324","display_name":"CY Cergy Paris Universit\u00e9","ror":"https://ror.org/043htjv09","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210142324"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jeremy Esque","raw_affiliation_strings":["INSERM UMR-S 665, Dynamique des Structures et Interactions des Macromol\u00e9cules Biologiques (DSIMB), Universit\u00e9 Paris Diderot, Paris 7, INTS, 6, rue Alexandre Cabanel, 75739 Paris Cedex 15, France","LPTM, CNRS UMR 8089, Universit\u00e9 de Cergy Pontoise, 2 av. Adolphe Chauvin, 95302 Cergy-Pontoise, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INSERM UMR-S 665, Dynamique des Structures et Interactions des Macromol\u00e9cules Biologiques (DSIMB), Universit\u00e9 Paris Diderot, Paris 7, INTS, 6, rue Alexandre Cabanel, 75739 Paris Cedex 15, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I154526488"]},{"raw_affiliation_string":"LPTM, CNRS UMR 8089, Universit\u00e9 de Cergy Pontoise, 2 av. Adolphe Chauvin, 95302 Cergy-Pontoise, France","institution_ids":["https://openalex.org/I4210142324","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073345998","display_name":"C. Oguey","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210142324","display_name":"CY Cergy Paris Universit\u00e9","ror":"https://ror.org/043htjv09","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210142324"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Christophe Oguey","raw_affiliation_strings":["LPTM, CNRS UMR 8089, Universit\u00e9 de Cergy Pontoise, 2 av. Adolphe Chauvin, 95302 Cergy-Pontoise, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LPTM, CNRS UMR 8089, Universit\u00e9 de Cergy Pontoise, 2 av. Adolphe Chauvin, 95302 Cergy-Pontoise, France","institution_ids":["https://openalex.org/I4210142324","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024376929","display_name":"Alexandre G. de Brevern","orcid":"https://orcid.org/0000-0001-7112-5626"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Alexandre G. de Brevern","raw_affiliation_strings":["INSERM UMR-S 665, Dynamique des Structures et Interactions des Macromol\u00e9cules Biologiques (DSIMB), Universit\u00e9 Paris Diderot, Paris 7, INTS, 6, rue Alexandre Cabanel, 75739 Paris Cedex 15, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INSERM UMR-S 665, Dynamique des Structures et Interactions des Macromol\u00e9cules Biologiques (DSIMB), Universit\u00e9 Paris Diderot, Paris 7, INTS, 6, rue Alexandre Cabanel, 75739 Paris Cedex 15, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I154526488"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.9315,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":{"value":0.72807171,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"51","issue":"2","first_page":"493","last_page":"507"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9865000247955322,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/voronoi-diagram","display_name":"Voronoi diagram","score":0.6444779634475708},{"id":"https://openalex.org/keywords/tessellation","display_name":"Tessellation (computer graphics)","score":0.5884815454483032},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.5265952348709106},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.5161779522895813},{"id":"https://openalex.org/keywords/protein-folding","display_name":"Protein folding","score":0.4864747226238251},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.45604825019836426},{"id":"https://openalex.org/keywords/residue","display_name":"Residue (chemistry)","score":0.427859365940094},{"id":"https://openalex.org/keywords/crystallography","display_name":"Crystallography","score":0.3833795189857483},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.37477728724479675},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3562872111797333},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.34283727407455444},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.3245144486427307},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3114088773727417},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.2773154377937317},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.25077909231185913},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2373456060886383},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.16369587182998657},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1133137047290802}],"concepts":[{"id":"https://openalex.org/C24881265","wikidata":"https://www.wikidata.org/wiki/Q757267","display_name":"Voronoi diagram","level":2,"score":0.6444779634475708},{"id":"https://openalex.org/C43817857","wikidata":"https://www.wikidata.org/wiki/Q9357547","display_name":"Tessellation (computer graphics)","level":2,"score":0.5884815454483032},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.5265952348709106},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.5161779522895813},{"id":"https://openalex.org/C204328495","wikidata":"https://www.wikidata.org/wiki/Q847556","display_name":"Protein folding","level":2,"score":0.4864747226238251},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.45604825019836426},{"id":"https://openalex.org/C2781338088","wikidata":"https://www.wikidata.org/wiki/Q903495","display_name":"Residue (chemistry)","level":2,"score":0.427859365940094},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.3833795189857483},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.37477728724479675},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3562872111797333},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.34283727407455444},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.3245144486427307},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3114088773727417},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.2773154377937317},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.25077909231185913},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2373456060886383},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.16369587182998657},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1133137047290802}],"mesh":[{"descriptor_ui":"D004220","descriptor_name":"Disulfides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004220","descriptor_name":"Disulfides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004220","descriptor_name":"Disulfides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057927","descriptor_name":"Hydrophobic and Hydrophilic Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057927","descriptor_name":"Hydrophobic and Hydrophilic Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057927","descriptor_name":"Hydrophobic and Hydrophilic Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1021/ci100195t","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci100195t","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:21226523","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21226523","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:HAL:inserm-00568174v1","is_oa":true,"landing_page_url":"https://inserm.hal.science/inserm-00568174","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Chemical Information and Modeling, 2011, 51 (2), pp.493-507. &#x27E8;10.1021/ci100195t&#x27E9;","raw_type":"Journal articles"}],"best_oa_location":{"id":"pmh:oai:HAL:inserm-00568174v1","is_oa":true,"landing_page_url":"https://inserm.hal.science/inserm-00568174","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Chemical Information and Modeling, 2011, 51 (2), pp.493-507. &#x27E8;10.1021/ci100195t&#x27E9;","raw_type":"Journal articles"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.6899999976158142,"id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320319990","display_name":"National Institute for Health and Care Research","ror":"https://ror.org/0187kwz08"},{"id":"https://openalex.org/F4320320893","display_name":"Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale","ror":"https://ror.org/02vjkv261"},{"id":"https://openalex.org/F4320322727","display_name":"Minist\u00e8re de l'Education Nationale, de l'Enseignement Superieur et de la Recherche","ror":"https://ror.org/03sjk9a61"},{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"},{"id":"https://openalex.org/F4320323399","display_name":"Universit\u00e9 Paris Diderot","ror":"https://ror.org/02n7qrg46"},{"id":"https://openalex.org/F4320323765","display_name":"Institut National de la Transfusion Sanguine","ror":"https://ror.org/00fh58138"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":100,"referenced_works":["https://openalex.org/W107672856","https://openalex.org/W255996521","https://openalex.org/W1519235666","https://openalex.org/W1526151739","https://openalex.org/W1899703372","https://openalex.org/W1966078827","https://openalex.org/W1967744164","https://openalex.org/W1969695285","https://openalex.org/W1971565686","https://openalex.org/W1976499671","https://openalex.org/W1976499789","https://openalex.org/W1977025440","https://openalex.org/W1979261738","https://openalex.org/W1981021420","https://openalex.org/W1984547849","https://openalex.org/W1984615569","https://openalex.org/W1987015207","https://openalex.org/W1997870466","https://openalex.org/W2001504699","https://openalex.org/W2005107084","https://openalex.org/W2005120335","https://openalex.org/W2008708467","https://openalex.org/W2012396734","https://openalex.org/W2014074723","https://openalex.org/W2019544250","https://openalex.org/W2020462866","https://openalex.org/W2025925640","https://openalex.org/W2027154929","https://openalex.org/W2028069026","https://openalex.org/W2029820720","https://openalex.org/W2031368570","https://openalex.org/W2033354942","https://openalex.org/W2035266068","https://openalex.org/W2036634847","https://openalex.org/W2041154852","https://openalex.org/W2041933909","https://openalex.org/W2046429206","https://openalex.org/W2048452697","https://openalex.org/W2048718740","https://openalex.org/W2049307663","https://openalex.org/W2049966629","https://openalex.org/W2051381895","https://openalex.org/W2051872583","https://openalex.org/W2052660967","https://openalex.org/W2055118532","https://openalex.org/W2056366317","https://openalex.org/W2057025311","https://openalex.org/W2062926294","https://openalex.org/W2080737377","https://openalex.org/W2089035513","https://openalex.org/W2093945918","https://openalex.org/W2097775420","https://openalex.org/W2099344550","https://openalex.org/W2100063856","https://openalex.org/W2100981947","https://openalex.org/W2103856741","https://openalex.org/W2104192260","https://openalex.org/W2107326055","https://openalex.org/W2109215281","https://openalex.org/W2111643578","https://openalex.org/W2115799627","https://openalex.org/W2116844782","https://openalex.org/W2118270944","https://openalex.org/W2119902292","https://openalex.org/W2121372252","https://openalex.org/W2123768693","https://openalex.org/W2124585134","https://openalex.org/W2125200874","https://openalex.org/W2126482097","https://openalex.org/W2126817143","https://openalex.org/W2128137789","https://openalex.org/W2128572087","https://openalex.org/W2130479394","https://openalex.org/W2131128775","https://openalex.org/W2133062651","https://openalex.org/W2135500937","https://openalex.org/W2135572502","https://openalex.org/W2138284216","https://openalex.org/W2139445777","https://openalex.org/W2148768886","https://openalex.org/W2152064613","https://openalex.org/W2153153865","https://openalex.org/W2154854306","https://openalex.org/W2155736194","https://openalex.org/W2164450010","https://openalex.org/W2164507558","https://openalex.org/W2169941775","https://openalex.org/W2170612635","https://openalex.org/W2171268876","https://openalex.org/W2171546617","https://openalex.org/W2171781238","https://openalex.org/W2611400920","https://openalex.org/W3047916294","https://openalex.org/W3199387913","https://openalex.org/W3200464911","https://openalex.org/W3201413583","https://openalex.org/W3201606613","https://openalex.org/W4230638849","https://openalex.org/W4247866849","https://openalex.org/W4302769196"],"related_works":["https://openalex.org/W1997141012","https://openalex.org/W1516845492","https://openalex.org/W1978501764","https://openalex.org/W4379093271","https://openalex.org/W2005041861","https://openalex.org/W2013420653","https://openalex.org/W2371724110","https://openalex.org/W2180734429","https://openalex.org/W2126647504","https://openalex.org/W4206423751"],"abstract_inverted_index":{"The":[0,56],"3D":[1,16],"structure":[2,44,46,149],"of":[3,11,34,43,63,76,134,140,166,179,197,213],"a":[4,12,60,170],"protein":[5,17,35,135,203,214],"is":[6,193],"the":[7,32,41,69,99,106,116,132,138,141,144,147,152,163,177,180,190],"main":[8],"physical":[9],"support":[10],"protein's":[13],"biological":[14],"function;":[15],"folds":[18],"are":[19,29,51],"primarily":[20],"maintained":[21],"through":[22],"interactions":[23],"between":[24,125,154],"amino":[25,127],"acids.":[26],"Inter-residue":[27],"contacts":[28,124,185],"essential":[30],"for":[31,66,208],"stability":[33],"folds.":[36],"Therefore,":[37],"many":[38],"methodologies":[39],"in":[40,183],"fields":[42],"analysis,":[45],"prediction,":[47],"and":[48,73,88,95,130,146],"structure-function":[49],"relationships":[50],"based":[52,108],"on":[53,91,109,173],"residue":[54,92],"contacts.":[55,168],"present":[57],"study":[58,172],"provides":[59],"comparative":[61],"analysis":[62],"two":[64],"approaches":[65],"determining":[67,184],"contacts:":[68],"classical":[70],"distance-threshold":[71],"method":[72,107,192],"an":[74],"application":[75],"Laguerre,":[77],"or":[78],"weighted":[79],"Voronoi":[80],"tessellation.":[81,187],"First,":[82],"we":[83],"examined":[84],"mean":[85],"contact":[86],"distributions":[87],"their":[89],"dependence":[90],"volumes,":[93],"accessibility":[94],"hydrophobicity.":[96],"In":[97,188],"general,":[98],"different":[100],"methods":[101,155,212],"gave":[102],"concordant":[103],"results,":[104],"although":[105],"C\u03b1":[110],"distances":[111],"showed":[112],"significant":[113],"discrepancies":[114,153],"with":[115,205],"all-atom":[117],"tessellation":[118,191],"method.":[119],"We":[120],"also":[121],"analyzed":[122],"preferential":[123],"all":[126],"acid":[128],"species":[129],"studied":[131],"influence":[133],"chain":[136],"length,":[137],"proximity":[139],"residues":[142],"along":[143],"sequence,":[145],"secondary":[148],"environment.":[150],"Interestingly,":[151],"were":[156],"occasionally":[157],"large":[158],"enough":[159],"to":[160,201],"substantially":[161],"change":[162],"relative":[164],"preferences":[165],"some":[167],"Finally,":[169],"case":[171],"disulfide":[174],"bridges":[175],"demonstrated":[176],"importance":[178],"structural":[181],"environment":[182],"from":[186],"conclusion,":[189],"more":[194],"accurate":[195],"because":[196],"its":[198],"fine":[199],"adaptation":[200],"local":[202],"topology,":[204],"far-reaching":[206],"implications":[207],"most":[209],"contact-based":[210],"prediction":[211],"folding.":[215]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
