{"id":"https://openalex.org/W1974948045","doi":"https://doi.org/10.1021/ci050277o","title":"Virtual Hydrocarbon and Combinatorial Databases for Use with CAVEAT","display_name":"Virtual Hydrocarbon and Combinatorial Databases for Use with CAVEAT","publication_year":2005,"publication_date":"2005-11-01","ids":{"openalex":"https://openalex.org/W1974948045","doi":"https://doi.org/10.1021/ci050277o","mag":"1974948045","pmid":"https://pubmed.ncbi.nlm.nih.gov/16309289"},"language":"en","primary_location":{"id":"doi:10.1021/ci050277o","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci050277o","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077997329","display_name":"Yongliang Yang","orcid":"https://orcid.org/0000-0003-0449-0599"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yongliang Yang","raw_affiliation_strings":["Department of Chemistry, Stony Brook University, Stony Brook, New York 11794, and Center for New Directions in Organic Synthesis, Department of Chemistry, University of California, Berkeley, California 94720"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Stony Brook University, Stony Brook, New York 11794, and Center for New Directions in Organic Synthesis, Department of Chemistry, University of California, Berkeley, California 94720","institution_ids":["https://openalex.org/I59553526","https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080930934","display_name":"Dmitri V. Nesterenko","orcid":null},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dmitri V. Nesterenko","raw_affiliation_strings":["Department of Chemistry, Stony Brook University, Stony Brook, New York 11794, and Center for New Directions in Organic Synthesis, Department of Chemistry, University of California, Berkeley, California 94720"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Stony Brook University, Stony Brook, New York 11794, and Center for New Directions in Organic Synthesis, Department of Chemistry, University of California, Berkeley, California 94720","institution_ids":["https://openalex.org/I59553526","https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078513474","display_name":"Ryan P. Trump","orcid":null},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ryan P. Trump","raw_affiliation_strings":["Department of Chemistry, Stony Brook University, Stony Brook, New York 11794, and Center for New Directions in Organic Synthesis, Department of Chemistry, University of California, Berkeley, California 94720"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Stony Brook University, Stony Brook, New York 11794, and Center for New Directions in Organic Synthesis, Department of Chemistry, University of California, Berkeley, California 94720","institution_ids":["https://openalex.org/I59553526","https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078583769","display_name":"Ken Yamaguchi","orcid":"https://orcid.org/0000-0002-9893-7218"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ken Yamaguchi","raw_affiliation_strings":["Department of Chemistry, Stony Brook University, Stony Brook, New York 11794, and Center for New Directions in Organic Synthesis, Department of Chemistry, University of California, Berkeley, California 94720"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Stony Brook University, Stony Brook, New York 11794, and Center for New Directions in Organic Synthesis, Department of Chemistry, University of California, Berkeley, California 94720","institution_ids":["https://openalex.org/I59553526","https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103463683","display_name":"Paul A. Bartlett","orcid":null},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul A. Bartlett","raw_affiliation_strings":["Department of Chemistry, Stony Brook University, Stony Brook, New York 11794, and Center for New Directions in Organic Synthesis, Department of Chemistry, University of California, Berkeley, California 94720"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Stony Brook University, Stony Brook, New York 11794, and Center for New Directions in Organic Synthesis, Department of Chemistry, University of California, Berkeley, California 94720","institution_ids":["https://openalex.org/I59553526","https://openalex.org/I95457486"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003732986","display_name":"Dale G. Drueckhammer","orcid":null},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Dale G. Drueckhammer","raw_affiliation_strings":["Department of Chemistry, Stony Brook University, Stony Brook, New York 11794, and Center for New Directions in Organic Synthesis, Department of Chemistry, University of California, Berkeley, California 94720"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Stony Brook University, Stony Brook, New York 11794, and Center for New Directions in Organic Synthesis, Department of Chemistry, University of California, Berkeley, California 94720","institution_ids":["https://openalex.org/I59553526","https://openalex.org/I95457486"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5003732986"],"corresponding_institution_ids":["https://openalex.org/I59553526","https://openalex.org/I95457486"],"apc_list":null,"apc_paid":null,"fwci":0.5932,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.63057119,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"45","issue":"6","first_page":"1820","last_page":"1823"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10013","display_name":"Asymmetric Synthesis and Catalysis","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.7782480120658875},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.5608232617378235},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.49526992440223694},{"id":"https://openalex.org/keywords/combinatorial-chemistry","display_name":"Combinatorial chemistry","score":0.4709906280040741},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3773428201675415},{"id":"https://openalex.org/keywords/organic-chemistry","display_name":"Organic chemistry","score":0.29531919956207275}],"concepts":[{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.7782480120658875},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.5608232617378235},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.49526992440223694},{"id":"https://openalex.org/C21951064","wikidata":"https://www.wikidata.org/wiki/Q899212","display_name":"Combinatorial chemistry","level":1,"score":0.4709906280040741},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3773428201675415},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.29531919956207275}],"mesh":[{"descriptor_ui":"D001643","descriptor_name":"Bridged Bicyclo Compounds","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001643","descriptor_name":"Bridged Bicyclo Compounds","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001643","descriptor_name":"Bridged Bicyclo Compounds","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003510","descriptor_name":"Cyclohexanes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003510","descriptor_name":"Cyclohexanes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003510","descriptor_name":"Cyclohexanes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006838","descriptor_name":"Hydrocarbons","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006838","descriptor_name":"Hydrocarbons","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006838","descriptor_name":"Hydrocarbons","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020650","descriptor_name":"Combinatorial Chemistry Techniques","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D020650","descriptor_name":"Combinatorial Chemistry Techniques","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D020650","descriptor_name":"Combinatorial Chemistry Techniques","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/ci050277o","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci050277o","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:16309289","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16309289","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320307115","display_name":"Bristol-Myers Squibb","ror":"https://ror.org/00gtmwv55"},{"id":"https://openalex.org/F4320332736","display_name":"Novartis Pharma","ror":"https://ror.org/0013shd50"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W123514139","https://openalex.org/W1975394030","https://openalex.org/W1994708949","https://openalex.org/W1999556964","https://openalex.org/W2013470095","https://openalex.org/W2021303793","https://openalex.org/W2035349592","https://openalex.org/W2050273205","https://openalex.org/W2059018439","https://openalex.org/W2060537100","https://openalex.org/W2092400325","https://openalex.org/W2097233276","https://openalex.org/W2113788171","https://openalex.org/W2141714299","https://openalex.org/W4234267701","https://openalex.org/W4240586471"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W2948807893","https://openalex.org/W2778153218","https://openalex.org/W2748952813","https://openalex.org/W1531601525","https://openalex.org/W4391375266","https://openalex.org/W2078814861","https://openalex.org/W2527526854","https://openalex.org/W1976181487","https://openalex.org/W1986764834"],"abstract_inverted_index":{"Three":[0],"new":[1],"virtual":[2],"databases":[3],"have":[4],"been":[5],"developed":[6],"for":[7,78],"use":[8,79],"with":[9,80],"the":[10,56],"bond-orientation-based":[11],"database":[12,20,32,39,77],"searching":[13],"program":[14],"CAVEAT.":[15,81],"These":[16],"consist":[17],"of":[18,21,33,40,62],"a":[19,31,38,67,75],"trisubstituted":[22],"monocyclic":[23],"hydrocarbons":[24],"having":[25,48],"ethyl,":[26,50],"vinyl,":[27,51],"and":[28,37,52,72],"phenyl":[29,53],"substituents;":[30],"unsubstituted":[34],"bicyclic":[35],"hydrocarbons;":[36],"core":[41],"structures":[42],"from":[43],"established":[44],"combinatorial":[45],"synthetic":[46],"methods":[47],"hydrogen,":[49],"substituents":[54],"at":[55],"readily":[57],"varied":[58],"positions.":[59],"Each":[60],"collection":[61],"molecules":[63],"was":[64],"subjected":[65],"to":[66,74],"batch":[68],"conformational":[69],"search,":[70],"minimization,":[71],"conversion":[73],"vector":[76]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
