{"id":"https://openalex.org/W1963917497","doi":"https://doi.org/10.1021/ci049867x","title":"Enhancing the Effectiveness of Virtual Screening by Fusing Nearest Neighbor Lists:\u2009 A Comparison of Similarity Coefficients","display_name":"Enhancing the Effectiveness of Virtual Screening by Fusing Nearest Neighbor Lists:\u2009 A Comparison of Similarity Coefficients","publication_year":2004,"publication_date":"2004-09-01","ids":{"openalex":"https://openalex.org/W1963917497","doi":"https://doi.org/10.1021/ci049867x","mag":"1963917497","pmid":"https://pubmed.ncbi.nlm.nih.gov/15446844"},"language":"en","primary_location":{"id":"doi:10.1021/ci049867x","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci049867x","pdf_url":null,"source":{"id":"https://openalex.org/S171559003","display_name":"Journal of Chemical Information and Computer Sciences","issn_l":"0095-2338","issn":["0095-2338","1520-5142"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Computer Sciences","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108785323","display_name":"Martin Whittle","orcid":null},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Martin Whittle","raw_affiliation_strings":["Krebs Institute for Biomolecular Research and Department of Information Studies, University of Sheffield, Western Bank, Sheffield S10 2TN, U.K. m.whittle@sheffield.ac.uk","Krebs Institute for Biomolecular Research and Department of Information Studies , University of Sheffield , Western Bank, Sheffield, S10 2TN, U.K"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Krebs Institute for Biomolecular Research and Department of Information Studies, University of Sheffield, Western Bank, Sheffield S10 2TN, U.K. m.whittle@sheffield.ac.uk","institution_ids":["https://openalex.org/I91136226"]},{"raw_affiliation_string":"Krebs Institute for Biomolecular Research and Department of Information Studies , University of Sheffield , Western Bank, Sheffield, S10 2TN, U.K","institution_ids":["https://openalex.org/I91136226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030046388","display_name":"Valerie J. Gillet","orcid":"https://orcid.org/0000-0002-8403-3111"},"institutions":[{"id":"https://openalex.org/I189718659","display_name":"Pfizer (United Kingdom)","ror":"https://ror.org/04x4v8p40","country_code":"GB","type":"company","lineage":["https://openalex.org/I180857899","https://openalex.org/I189718659"]},{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Valerie J. Gillet","raw_affiliation_strings":["Krebs Institute for Biomolecular Research and Department of Information Studies, University of Sheffield, Western Bank, Sheffield S10 2TN, U.K","Pfizer Global Research and Development, Pfizer Limited, Ramsgate Road, Sandwich, Kent CT13 9NJ, U.K"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Krebs Institute for Biomolecular Research and Department of Information Studies, University of Sheffield, Western Bank, Sheffield S10 2TN, U.K","institution_ids":["https://openalex.org/I91136226"]},{"raw_affiliation_string":"Pfizer Global Research and Development, Pfizer Limited, Ramsgate Road, Sandwich, Kent CT13 9NJ, U.K","institution_ids":["https://openalex.org/I189718659"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102885255","display_name":"Peter Willett","orcid":"https://orcid.org/0000-0003-4591-7173"},"institutions":[{"id":"https://openalex.org/I189718659","display_name":"Pfizer (United Kingdom)","ror":"https://ror.org/04x4v8p40","country_code":"GB","type":"company","lineage":["https://openalex.org/I180857899","https://openalex.org/I189718659"]},{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Peter Willett","raw_affiliation_strings":["Krebs Institute for Biomolecular Research and Department of Information Studies, University of Sheffield, Western Bank, Sheffield S10 2TN, U.K","Pfizer Global Research and Development, Pfizer Limited, Ramsgate Road, Sandwich, Kent CT13 9NJ, U.K"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Krebs Institute for Biomolecular Research and Department of Information Studies, University of Sheffield, Western Bank, Sheffield S10 2TN, U.K","institution_ids":["https://openalex.org/I91136226"]},{"raw_affiliation_string":"Pfizer Global Research and Development, Pfizer Limited, Ramsgate Road, Sandwich, Kent CT13 9NJ, U.K","institution_ids":["https://openalex.org/I189718659"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103418003","display_name":"Alexander Alex","orcid":null},"institutions":[{"id":"https://openalex.org/I189718659","display_name":"Pfizer (United Kingdom)","ror":"https://ror.org/04x4v8p40","country_code":"GB","type":"company","lineage":["https://openalex.org/I180857899","https://openalex.org/I189718659"]},{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alexander Alex","raw_affiliation_strings":["Krebs Institute for Biomolecular Research and Department of Information Studies, University of Sheffield, Western Bank, Sheffield S10 2TN, U.K","Pfizer Global Research and Development, Pfizer Limited, Ramsgate Road, Sandwich, Kent CT13 9NJ, U.K"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Krebs Institute for Biomolecular Research and Department of Information Studies, University of Sheffield, Western Bank, Sheffield S10 2TN, U.K","institution_ids":["https://openalex.org/I91136226"]},{"raw_affiliation_string":"Pfizer Global Research and Development, Pfizer Limited, Ramsgate Road, Sandwich, Kent CT13 9NJ, U.K","institution_ids":["https://openalex.org/I189718659"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088381820","display_name":"Jens Loesel","orcid":null},"institutions":[{"id":"https://openalex.org/I189718659","display_name":"Pfizer (United Kingdom)","ror":"https://ror.org/04x4v8p40","country_code":"GB","type":"company","lineage":["https://openalex.org/I180857899","https://openalex.org/I189718659"]},{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jens Loesel","raw_affiliation_strings":["Krebs Institute for Biomolecular Research and Department of Information Studies, University of Sheffield, Western Bank, Sheffield S10 2TN, U.K","Pfizer Global Research and Development, Pfizer Limited, Ramsgate Road, Sandwich, Kent CT13 9NJ, U.K"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Krebs Institute for Biomolecular Research and Department of Information Studies, University of Sheffield, Western Bank, Sheffield S10 2TN, U.K","institution_ids":["https://openalex.org/I91136226"]},{"raw_affiliation_string":"Pfizer Global Research and Development, Pfizer Limited, Ramsgate Road, Sandwich, Kent CT13 9NJ, U.K","institution_ids":["https://openalex.org/I189718659"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5108785323"],"corresponding_institution_ids":["https://openalex.org/I91136226"],"apc_list":null,"apc_paid":null,"fwci":11.0763,"has_fulltext":false,"cited_by_count":109,"citation_normalized_percentile":{"value":0.98819852,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"44","issue":"5","first_page":"1840","last_page":"1848"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9886000156402588,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9886000156402588,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10057","display_name":"Face and Expression Recognition","score":0.9319999814033508,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11550","display_name":"Text and Document Classification Technologies","score":0.9126999974250793,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/k-nearest-neighbors-algorithm","display_name":"k-nearest neighbors algorithm","score":0.8243423700332642},{"id":"https://openalex.org/keywords/nearest-neighbor-search","display_name":"Nearest neighbor search","score":0.7836059331893921},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.7687013149261475},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.554535984992981},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4946903884410858},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.43233299255371094},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.39502114057540894},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3493129014968872},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.08777812123298645},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.0523238480091095},{"id":"https://openalex.org/keywords/stereochemistry","display_name":"Stereochemistry","score":0.04298493266105652}],"concepts":[{"id":"https://openalex.org/C113238511","wikidata":"https://www.wikidata.org/wiki/Q1071612","display_name":"k-nearest neighbors algorithm","level":2,"score":0.8243423700332642},{"id":"https://openalex.org/C116738811","wikidata":"https://www.wikidata.org/wiki/Q608751","display_name":"Nearest neighbor search","level":2,"score":0.7836059331893921},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.7687013149261475},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.554535984992981},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4946903884410858},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.43233299255371094},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.39502114057540894},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3493129014968872},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.08777812123298645},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0523238480091095},{"id":"https://openalex.org/C71240020","wikidata":"https://www.wikidata.org/wiki/Q186011","display_name":"Stereochemistry","level":1,"score":0.04298493266105652},{"id":"https://openalex.org/C56173144","wikidata":"https://www.wikidata.org/wiki/Q1539893","display_name":"Pharmacophore","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/ci049867x","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci049867x","pdf_url":null,"source":{"id":"https://openalex.org/S171559003","display_name":"Journal of Chemical Information and Computer Sciences","issn_l":"0095-2338","issn":["0095-2338","1520-5142"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Computer Sciences","raw_type":"journal-article"},{"id":"pmid:15446844","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15446844","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and computer sciences","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320307765","display_name":"Pfizer","ror":"https://ror.org/01xdqrp08"},{"id":"https://openalex.org/F4320320006","display_name":"Royal Society","ror":"https://ror.org/03wnrjx87"},{"id":"https://openalex.org/F4320320670","display_name":"Wolfson Foundation","ror":"https://ror.org/0333xzh65"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1605923270","https://openalex.org/W1968171598","https://openalex.org/W1990696547","https://openalex.org/W2030686695","https://openalex.org/W2035180565","https://openalex.org/W2049241863","https://openalex.org/W2093737637","https://openalex.org/W2096729078","https://openalex.org/W2113292457","https://openalex.org/W2158996711","https://openalex.org/W2159822007"],"related_works":["https://openalex.org/W2148008870","https://openalex.org/W2381195555","https://openalex.org/W4246757943","https://openalex.org/W2368606575","https://openalex.org/W2132753198","https://openalex.org/W2369874856","https://openalex.org/W2182477562","https://openalex.org/W2792185758","https://openalex.org/W2787484455","https://openalex.org/W2119808169"],"abstract_inverted_index":{"This":[0],"paper":[1],"evaluates":[2],"the":[3,28,34,52,83,91,95,102,108,121,131,138,151,155,159,162,171,182,188,199,202,213,217],"effectiveness":[4],"of":[5,36,85,94,115,120,161,164,170,190,219,227],"various":[6],"similarity":[7,11,220],"coefficients":[8],"for":[9,76,107,126,187,216],"2D":[10,44],"searching":[12],"when":[13,197],"multiple":[14,194,223],"bioactive":[15],"target":[16],"structures":[17],"are":[18,40,66],"available.":[19],"Similarity":[20],"searches":[21,221,237],"using":[22,42,118,154,193,198],"several":[23],"different":[24],"activity":[25,96,129,140],"classes":[26],"within":[27],"MDL":[29],"Drug":[30],"Data":[31],"Report":[32],"and":[33,158,238],"Dictionary":[35],"Natural":[37],"Products":[38],"databases":[39],"performed":[41],"BCI":[43],"fingerprints.":[45],"Using":[46],"data":[47],"fusion":[48,204],"techniques":[49],"to":[50,90,180,185,208,232],"combine":[51],"resulting":[53],"nearest":[54],"neighbor":[55],"lists":[56],"we":[57],"obtain":[58],"group":[59,113,132,156,228],"recall":[60,73,114,133,157,229],"results":[61,104],"which,":[62],"in":[63,168,235],"many":[64],"cases,":[65],"a":[67],"considerable":[68],"improvement":[69,86,134,153],"on":[70],"standard":[71],"average":[72],"values":[74],"obtained":[75],"individual":[77],"structures.":[78],"It":[79],"is":[80,99,123,143,148,177,206],"shown":[81],"that":[82,98],"degree":[84],"can":[87,230],"be":[88,181,209],"related":[89],"structural":[92],"diversity":[93],"class":[97,122,141],"searched":[100],"for,":[101],"best":[103,183],"being":[105],"found":[106,149,178,207],"most":[109],"diverse":[110],"groups.":[111],"The":[112,174,225],"active":[116,191],"compounds":[117,166,192],"subsets":[119],"also":[124],"investigated:":[125],"highly":[127],"self-similar":[128],"classes,":[130],"saturates":[135],"well":[136],"before":[137],"full":[139],"size":[142],"reached.":[144],"A":[145],"rough":[146],"correlation":[147],"between":[150],"relative":[152],"square":[160],"number":[163],"unique":[165],"available":[167],"all":[169],"merged":[172],"lists.":[173],"Tanimoto":[175,200],"coefficient":[176,184],"unambiguously":[179],"use":[186,226],"recovery":[189],"targets.":[195,224],"Furthermore,":[196],"coefficient,":[201],"\"MAX\"":[203],"rule":[205,215],"more":[210],"effective":[211],"than":[212],"\"SUM\"":[214],"combination":[218],"from":[222],"lead":[231],"improved":[233],"enrichment":[234],"database":[236],"virtual":[239],"screening.":[240]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":3}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
