{"id":"https://openalex.org/W2213138713","doi":"https://doi.org/10.1021/ci0342674","title":"Clustering Files of Chemical Structures Using the Fuzzy<i>k</i>-Means Clustering Method","display_name":"Clustering Files of Chemical Structures Using the Fuzzy<i>k</i>-Means Clustering Method","publication_year":2004,"publication_date":"2004-04-10","ids":{"openalex":"https://openalex.org/W2213138713","doi":"https://doi.org/10.1021/ci0342674","mag":"2213138713","pmid":"https://pubmed.ncbi.nlm.nih.gov/15154754"},"language":"en","primary_location":{"id":"doi:10.1021/ci0342674","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci0342674","pdf_url":null,"source":{"id":"https://openalex.org/S171559003","display_name":"Journal of Chemical Information and Computer Sciences","issn_l":"0095-2338","issn":["0095-2338","1520-5142"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Computer Sciences","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034861147","display_name":"John D. Holliday","orcid":null},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"John D. Holliday","raw_affiliation_strings":["Krebs Institute for Biomolecular Research and Department of Information Studies, University of Sheffield, Western Bank, Sheffield S10 2TN, U.K"],"affiliations":[{"raw_affiliation_string":"Krebs Institute for Biomolecular Research and Department of Information Studies, University of Sheffield, Western Bank, Sheffield S10 2TN, U.K","institution_ids":["https://openalex.org/I91136226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002103906","display_name":"Sarah L. Rodgers","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sarah L. Rodgers","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102885255","display_name":"Peter Willett","orcid":"https://orcid.org/0000-0003-4591-7173"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Peter Willett","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014299872","display_name":"Minyou Chen","orcid":"https://orcid.org/0000-0001-7186-5704"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Min-You Chen","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069916821","display_name":"Mahdi Mahfouf","orcid":"https://orcid.org/0000-0002-7349-5396"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mahdi Mahfouf","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068880319","display_name":"Kevin W. Lawson","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kevin Lawson","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5045344383","display_name":"Graham Mullier","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Graham Mullier","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5034861147"],"corresponding_institution_ids":["https://openalex.org/I91136226"],"apc_list":null,"apc_paid":null,"fwci":5.0576,"has_fulltext":false,"cited_by_count":48,"citation_normalized_percentile":{"value":0.95799273,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"44","issue":"3","first_page":"894","last_page":"902"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11667","display_name":"Advanced Chemical Sensor Technologies","score":0.9890000224113464,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10908","display_name":"Analytical Chemistry and Chromatography","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.8377065658569336},{"id":"https://openalex.org/keywords/fuzzy-clustering","display_name":"Fuzzy clustering","score":0.733070969581604},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.7046549916267395},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6184762120246887},{"id":"https://openalex.org/keywords/outlier","display_name":"Outlier","score":0.5851842761039734},{"id":"https://openalex.org/keywords/fuzzy-logic","display_name":"Fuzzy logic","score":0.490612655878067},{"id":"https://openalex.org/keywords/correlation-clustering","display_name":"Correlation clustering","score":0.4791261851787567},{"id":"https://openalex.org/keywords/cure-data-clustering-algorithm","display_name":"CURE data clustering algorithm","score":0.42874181270599365},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.38160252571105957},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36789414286613464},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3278784453868866}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.8377065658569336},{"id":"https://openalex.org/C17212007","wikidata":"https://www.wikidata.org/wiki/Q5511111","display_name":"Fuzzy clustering","level":3,"score":0.733070969581604},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.7046549916267395},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6184762120246887},{"id":"https://openalex.org/C79337645","wikidata":"https://www.wikidata.org/wiki/Q779824","display_name":"Outlier","level":2,"score":0.5851842761039734},{"id":"https://openalex.org/C58166","wikidata":"https://www.wikidata.org/wiki/Q224821","display_name":"Fuzzy logic","level":2,"score":0.490612655878067},{"id":"https://openalex.org/C94641424","wikidata":"https://www.wikidata.org/wiki/Q5172845","display_name":"Correlation clustering","level":3,"score":0.4791261851787567},{"id":"https://openalex.org/C33704608","wikidata":"https://www.wikidata.org/wiki/Q5014717","display_name":"CURE data clustering algorithm","level":4,"score":0.42874181270599365},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.38160252571105957},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36789414286613464},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3278784453868866}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1021/ci0342674","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci0342674","pdf_url":null,"source":{"id":"https://openalex.org/S171559003","display_name":"Journal of Chemical Information and Computer Sciences","issn_l":"0095-2338","issn":["0095-2338","1520-5142"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Computer Sciences","raw_type":"journal-article"},{"id":"pmid:15154754","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15154754","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and computer sciences","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320006","display_name":"Royal Society","ror":"https://ror.org/03wnrjx87"},{"id":"https://openalex.org/F4320320670","display_name":"Wolfson Foundation","ror":"https://ror.org/0333xzh65"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":45,"referenced_works":["https://openalex.org/W588180192","https://openalex.org/W1493454437","https://openalex.org/W1538011504","https://openalex.org/W1553258895","https://openalex.org/W1561414385","https://openalex.org/W1965896286","https://openalex.org/W1973826313","https://openalex.org/W1977320519","https://openalex.org/W1982952634","https://openalex.org/W1984226817","https://openalex.org/W1990368529","https://openalex.org/W2002664886","https://openalex.org/W2003074379","https://openalex.org/W2005008560","https://openalex.org/W2005685204","https://openalex.org/W2022116853","https://openalex.org/W2026262825","https://openalex.org/W2032726880","https://openalex.org/W2037708691","https://openalex.org/W2039174451","https://openalex.org/W2045578732","https://openalex.org/W2070598941","https://openalex.org/W2072286363","https://openalex.org/W2072598797","https://openalex.org/W2077018271","https://openalex.org/W2081050523","https://openalex.org/W2092203009","https://openalex.org/W2095477276","https://openalex.org/W2096729078","https://openalex.org/W2096768134","https://openalex.org/W2113076747","https://openalex.org/W2130070473","https://openalex.org/W2139708853","https://openalex.org/W2330022088","https://openalex.org/W2496352033","https://openalex.org/W2499419648","https://openalex.org/W2612166593","https://openalex.org/W2799061466","https://openalex.org/W2912565176","https://openalex.org/W2999729612","https://openalex.org/W3147295069","https://openalex.org/W4205687621","https://openalex.org/W4211007335","https://openalex.org/W4298882835","https://openalex.org/W4300491437"],"related_works":["https://openalex.org/W3022637481","https://openalex.org/W3144143113","https://openalex.org/W3120229345","https://openalex.org/W1999117613","https://openalex.org/W2393816671","https://openalex.org/W3039964395","https://openalex.org/W2596632494","https://openalex.org/W4224807364","https://openalex.org/W4312412183","https://openalex.org/W4292434959"],"abstract_inverted_index":{"This":[0],"paper":[1],"evaluates":[2],"the":[3,6,12,25,35,52,70,73,87],"use":[4,33],"of":[5,14,16,28,34,62,66,72],"fuzzy":[7,36,74],"k-means":[8,37,54,75],"clustering":[9,13,59],"method":[10,38,55,76],"for":[11],"files":[15],"2D":[17],"chemical":[18],"structures.":[19],"Simulated":[20],"property":[21],"prediction":[22],"experiments":[23],"with":[24,51,57],"Starlist":[26],"file":[27],"logP":[29],"values":[30],"demonstrate":[31,69],"that":[32,45],"can,":[39],"in":[40,94],"some":[41,95],"cases,":[42],"yield":[43],"results":[44],"are":[46],"superior":[47],"to":[48,77,82,92],"those":[49],"obtained":[50],"conventional":[53],"and":[56,81],"Ward's":[58],"method.":[60],"Clustering":[61],"several":[63],"small":[64],"sets":[65],"agrochemical":[67],"compounds":[68],"ability":[71],"highlight":[78],"multicluster":[79],"membership":[80],"identify":[83],"outlier":[84],"compounds,":[85],"although":[86],"former":[88],"can":[89],"be":[90],"difficult":[91],"interpret":[93],"cases.":[96]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":6}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2016-06-24T00:00:00"}
