{"id":"https://openalex.org/W2033401704","doi":"https://doi.org/10.1021/ci034210h","title":"Numerical Performance and Throughput Benchmark for Electronic Structure Calculations in PC\u2212Linux Systems with New Architectures, Updated Compilers, and Libraries","display_name":"Numerical Performance and Throughput Benchmark for Electronic Structure Calculations in PC\u2212Linux Systems with New Architectures, Updated Compilers, and Libraries","publication_year":2004,"publication_date":"2004-02-07","ids":{"openalex":"https://openalex.org/W2033401704","doi":"https://doi.org/10.1021/ci034210h","mag":"2033401704","pmid":"https://pubmed.ncbi.nlm.nih.gov/15032545"},"language":"en","primary_location":{"id":"doi:10.1021/ci034210h","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci034210h","pdf_url":null,"source":{"id":"https://openalex.org/S171559003","display_name":"Journal of Chemical Information and Computer Sciences","issn_l":"0095-2338","issn":["0095-2338","1520-5142"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Computer Sciences","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100748917","display_name":"Jen\u2010Shiang K. Yu","orcid":"https://orcid.org/0000-0003-1552-9436"},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]},{"id":"https://openalex.org/I25846049","display_name":"National Tsing Hua University","ror":"https://ror.org/00zdnkx70","country_code":"TW","type":"education","lineage":["https://openalex.org/I25846049"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Jen-Shiang K. Yu","raw_affiliation_strings":["Department of Biological Science and Technology, National Chiao Tung University, No. 75, Po-Ai Street, Hsinchu 300, Taiwan, and Departments of Computer Science and Chemistry, National Tsing Hua University, No. 101, Kuang-Fu Road Sec. 2, Hsinchu 300, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Science and Technology, National Chiao Tung University, No. 75, Po-Ai Street, Hsinchu 300, Taiwan, and Departments of Computer Science and Chemistry, National Tsing Hua University, No. 101, Kuang-Fu Road Sec. 2, Hsinchu 300, Taiwan","institution_ids":["https://openalex.org/I148366613","https://openalex.org/I25846049"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102145100","display_name":"Jenn\u2010Kang Hwang","orcid":null},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]},{"id":"https://openalex.org/I25846049","display_name":"National Tsing Hua University","ror":"https://ror.org/00zdnkx70","country_code":"TW","type":"education","lineage":["https://openalex.org/I25846049"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Jenn-Kang Hwang","raw_affiliation_strings":["Department of Biological Science and Technology, National Chiao Tung University, No. 75, Po-Ai Street, Hsinchu 300, Taiwan, and Departments of Computer Science and Chemistry, National Tsing Hua University, No. 101, Kuang-Fu Road Sec. 2, Hsinchu 300, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Science and Technology, National Chiao Tung University, No. 75, Po-Ai Street, Hsinchu 300, Taiwan, and Departments of Computer Science and Chemistry, National Tsing Hua University, No. 101, Kuang-Fu Road Sec. 2, Hsinchu 300, Taiwan","institution_ids":["https://openalex.org/I148366613","https://openalex.org/I25846049"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101474162","display_name":"Chuan Yi Tang","orcid":"https://orcid.org/0000-0003-0729-1624"},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]},{"id":"https://openalex.org/I25846049","display_name":"National Tsing Hua University","ror":"https://ror.org/00zdnkx70","country_code":"TW","type":"education","lineage":["https://openalex.org/I25846049"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chuan Yi Tang","raw_affiliation_strings":["Department of Biological Science and Technology, National Chiao Tung University, No. 75, Po-Ai Street, Hsinchu 300, Taiwan, and Departments of Computer Science and Chemistry, National Tsing Hua University, No. 101, Kuang-Fu Road Sec. 2, Hsinchu 300, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Science and Technology, National Chiao Tung University, No. 75, Po-Ai Street, Hsinchu 300, Taiwan, and Departments of Computer Science and Chemistry, National Tsing Hua University, No. 101, Kuang-Fu Road Sec. 2, Hsinchu 300, Taiwan","institution_ids":["https://openalex.org/I148366613","https://openalex.org/I25846049"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102930770","display_name":"Chin\u2010Hui Yu","orcid":"https://orcid.org/0000-0003-4947-017X"},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]},{"id":"https://openalex.org/I25846049","display_name":"National Tsing Hua University","ror":"https://ror.org/00zdnkx70","country_code":"TW","type":"education","lineage":["https://openalex.org/I25846049"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chin-Hui Yu","raw_affiliation_strings":["Department of Biological Science and Technology, National Chiao Tung University, No. 75, Po-Ai Street, Hsinchu 300, Taiwan, and Departments of Computer Science and Chemistry, National Tsing Hua University, No. 101, Kuang-Fu Road Sec. 2, Hsinchu 300, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Science and Technology, National Chiao Tung University, No. 75, Po-Ai Street, Hsinchu 300, Taiwan, and Departments of Computer Science and Chemistry, National Tsing Hua University, No. 101, Kuang-Fu Road Sec. 2, Hsinchu 300, Taiwan","institution_ids":["https://openalex.org/I148366613","https://openalex.org/I25846049"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100748917"],"corresponding_institution_ids":["https://openalex.org/I148366613","https://openalex.org/I25846049"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.15543359,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"44","issue":"2","first_page":"635","last_page":"642"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10054","display_name":"Parallel Computing and Optimization Techniques","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10054","display_name":"Parallel Computing and Optimization Techniques","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/compiler","display_name":"Compiler","score":0.8539021611213684},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8159791231155396},{"id":"https://openalex.org/keywords/fortran","display_name":"Fortran","score":0.7429722547531128},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.6749622821807861},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.586747407913208},{"id":"https://openalex.org/keywords/optimizing-compiler","display_name":"Optimizing compiler","score":0.42594027519226074},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.3295324742794037}],"concepts":[{"id":"https://openalex.org/C169590947","wikidata":"https://www.wikidata.org/wiki/Q47506","display_name":"Compiler","level":2,"score":0.8539021611213684},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8159791231155396},{"id":"https://openalex.org/C2778241615","wikidata":"https://www.wikidata.org/wiki/Q83303","display_name":"Fortran","level":2,"score":0.7429722547531128},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.6749622821807861},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.586747407913208},{"id":"https://openalex.org/C190902152","wikidata":"https://www.wikidata.org/wiki/Q1325106","display_name":"Optimizing compiler","level":3,"score":0.42594027519226074},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3295324742794037},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1021/ci034210h","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci034210h","pdf_url":null,"source":{"id":"https://openalex.org/S171559003","display_name":"Journal of Chemical Information and Computer Sciences","issn_l":"0095-2338","issn":["0095-2338","1520-5142"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Computer Sciences","raw_type":"journal-article"},{"id":"pmid:15032545","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15032545","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and computer sciences","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":1,"referenced_works":["https://openalex.org/W2020667524"],"related_works":["https://openalex.org/W2002505081","https://openalex.org/W2083681681","https://openalex.org/W2577630842","https://openalex.org/W3146558274","https://openalex.org/W1172579163","https://openalex.org/W1488300410","https://openalex.org/W2138790427","https://openalex.org/W4246454774","https://openalex.org/W2162051035","https://openalex.org/W1597127505"],"abstract_inverted_index":{"A":[0],"number":[1],"of":[2,38,52,74,103,129,191,203,207,209],"recently":[3],"released":[4],"numerical":[5,21,133],"libraries":[6,134],"including":[7],"Automatically":[8],"Tuned":[9],"Linear":[10],"Algebra":[11],"Subroutines":[12],"(ATLAS)":[13],"library,":[14,22],"Intel":[15,57,156],"Math":[16,26],"Kernel":[17],"Library":[18,27],"(MKL),":[19],"GOTO":[20],"and":[23,62,155,176,219],"AMD":[24,30,148],"Core":[25],"(ACML)":[28],"for":[29],"Opteron":[31,149],"processors,":[32],"are":[33,116,135,144,222],"linked":[34],"against":[35],"the":[36,39,81,98,104,108,118,173,177,180,192,210,230,236],"executables":[37],"Gaussian":[40],"98":[41],"electronic":[42],"structure":[43],"calculation":[44],"package,":[45],"which":[46,232],"is":[47,92,165,183,198,233],"compiled":[48],"by":[49,171,186,200],"updated":[50],"versions":[51],"Fortran":[53,58,64,157],"compilers":[54],"such":[55],"as":[56],"compiler":[59,65,105,113,158],"(ifc/efc)":[60],"7.1":[61,70],"PGI":[63],"(pgf77/pgf90)":[66],"5.0.":[67],"The":[68,127,137,195],"ifc":[69],"delivers":[71],"about":[72,125],"3%":[73,95],"improvement":[75],"on":[76,147],"32-bit":[77,153],"machines":[78],"compared":[79,188],"to":[80,90,124,167,189,224],"former":[82],"version":[83],"6.0.":[84],"Performance":[85],"improved":[86],"from":[87],"pgf77":[88],"3.3":[89],"5.0":[91],"also":[93,145],"around":[94],"when":[96],"utilizing":[97],"original":[99],"unmodified":[100],"optimization":[101],"options":[102,115],"enclosed":[106],"in":[107,152,179],"software.":[109],"Nevertheless,":[110],"if":[111],"extensive":[112],"tuning":[114,164],"used,":[117],"speed":[119],"can":[120],"be":[121],"further":[122,184],"accelerated":[123,185],"25%.":[126],"performances":[128],"these":[130],"fully":[131],"optimized":[132],"similar.":[136],"double-precision":[138],"floating-point":[139],"(FP)":[140],"instruction":[141],"sets":[142],"(SSE2)":[143],"functional":[146],"processors":[150],"operated":[151],"compilation,":[154],"has":[159],"performed":[160],"better":[161],"optimization.":[162],"Hardware-level":[163],"able":[166,223],"improve":[168],"memory":[169],"bandwidth":[170],"adjusting":[172],"DRAM":[174],"timing,":[175],"efficiency":[178],"CL2":[181],"mode":[182],"2.6%":[187],"that":[190,217],"CL2.5":[193],"mode.":[194],"FP":[196],"throughput":[197,228],"measured":[199],"simultaneous":[201],"execution":[202],"two":[204],"identical":[205],"copies":[206],"each":[208],"test":[211],"jobs.":[212],"Resultant":[213],"performance":[214],"impact":[215],"suggests":[216],"IA64":[218],"AMD64":[220],"architectures":[221],"fulfill":[225],"significantly":[226],"higher":[227],"than":[229],"IA32,":[231],"consistent":[234],"with":[235],"SpecFPrate2000":[237],"benchmarks.":[238]},"counts_by_year":[],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2016-06-24T00:00:00"}
