{"id":"https://openalex.org/W2030362354","doi":"https://doi.org/10.1021/ci000120q","title":"On the Characterization of DNA Primary Sequences by Triplet of Nucleic Acid Bases","display_name":"On the Characterization of DNA Primary Sequences by Triplet of Nucleic Acid Bases","publication_year":2001,"publication_date":"2001-03-14","ids":{"openalex":"https://openalex.org/W2030362354","doi":"https://doi.org/10.1021/ci000120q","mag":"2030362354","pmid":"https://pubmed.ncbi.nlm.nih.gov/11410038"},"language":"en","primary_location":{"id":"doi:10.1021/ci000120q","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci000120q","pdf_url":null,"source":{"id":"https://openalex.org/S171559003","display_name":"Journal of Chemical Information and Computer Sciences","issn_l":"0095-2338","issn":["0095-2338","1520-5142"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Computer Sciences","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081252768","display_name":"Milan Randi\u0107","orcid":"https://orcid.org/0000-0002-1169-4701"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]},{"id":"https://openalex.org/I87213936","display_name":"Drake University","ror":"https://ror.org/001skmk61","country_code":"US","type":"education","lineage":["https://openalex.org/I87213936"]},{"id":"https://openalex.org/I96908189","display_name":"Xinjiang University","ror":"https://ror.org/059gw8r13","country_code":"CN","type":"education","lineage":["https://openalex.org/I96908189"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Milan Randi\u0107","raw_affiliation_strings":["Department of Mathematics & Computer Science, Drake University, Des Moines, Iowa 50311, Institute of Mathematics and Physics, Xinjiang University, Wulumuqi Xinjiang 830046, P. R. China, and Natural Resources Research Institute, University of Minnesota at Duluth, Duluth, Minnesota 55811"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics & Computer Science, Drake University, Des Moines, Iowa 50311, Institute of Mathematics and Physics, Xinjiang University, Wulumuqi Xinjiang 830046, P. R. China, and Natural Resources Research Institute, University of Minnesota at Duluth, Duluth, Minnesota 55811","institution_ids":["https://openalex.org/I130238516","https://openalex.org/I87213936","https://openalex.org/I96908189"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103566660","display_name":"Xiaofeng Guo","orcid":null},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]},{"id":"https://openalex.org/I87213936","display_name":"Drake University","ror":"https://ror.org/001skmk61","country_code":"US","type":"education","lineage":["https://openalex.org/I87213936"]},{"id":"https://openalex.org/I96908189","display_name":"Xinjiang University","ror":"https://ror.org/059gw8r13","country_code":"CN","type":"education","lineage":["https://openalex.org/I96908189"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Xiaofeng Guo","raw_affiliation_strings":["Department of Mathematics & Computer Science, Drake University, Des Moines, Iowa 50311, Institute of Mathematics and Physics, Xinjiang University, Wulumuqi Xinjiang 830046, P. R. China, and Natural Resources Research Institute, University of Minnesota at Duluth, Duluth, Minnesota 55811"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics & Computer Science, Drake University, Des Moines, Iowa 50311, Institute of Mathematics and Physics, Xinjiang University, Wulumuqi Xinjiang 830046, P. R. China, and Natural Resources Research Institute, University of Minnesota at Duluth, Duluth, Minnesota 55811","institution_ids":["https://openalex.org/I130238516","https://openalex.org/I87213936","https://openalex.org/I96908189"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036559500","display_name":"Subhash C. Basak","orcid":"https://orcid.org/0000-0002-2086-5867"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]},{"id":"https://openalex.org/I87213936","display_name":"Drake University","ror":"https://ror.org/001skmk61","country_code":"US","type":"education","lineage":["https://openalex.org/I87213936"]},{"id":"https://openalex.org/I96908189","display_name":"Xinjiang University","ror":"https://ror.org/059gw8r13","country_code":"CN","type":"education","lineage":["https://openalex.org/I96908189"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Subhash C. Basak","raw_affiliation_strings":["Department of Mathematics & Computer Science, Drake University, Des Moines, Iowa 50311, Institute of Mathematics and Physics, Xinjiang University, Wulumuqi Xinjiang 830046, P. R. China, and Natural Resources Research Institute, University of Minnesota at Duluth, Duluth, Minnesota 55811"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics & Computer Science, Drake University, Des Moines, Iowa 50311, Institute of Mathematics and Physics, Xinjiang University, Wulumuqi Xinjiang 830046, P. R. China, and Natural Resources Research Institute, University of Minnesota at Duluth, Duluth, Minnesota 55811","institution_ids":["https://openalex.org/I130238516","https://openalex.org/I87213936","https://openalex.org/I96908189"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.7886,"has_fulltext":false,"cited_by_count":104,"citation_normalized_percentile":{"value":0.84383046,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"41","issue":"3","first_page":"619","last_page":"626"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/nucleic-acid","display_name":"Nucleic acid","score":0.7242221832275391},{"id":"https://openalex.org/keywords/eigenvalues-and-eigenvectors","display_name":"Eigenvalues and eigenvectors","score":0.6690397262573242},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.6332029700279236},{"id":"https://openalex.org/keywords/enumeration","display_name":"Enumeration","score":0.5997612476348877},{"id":"https://openalex.org/keywords/invariant","display_name":"Invariant (physics)","score":0.5812610387802124},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.4464329779148102},{"id":"https://openalex.org/keywords/characterization","display_name":"Characterization (materials science)","score":0.4312138855457306},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.4044162631034851},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.32111769914627075},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27754127979278564},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.23232290148735046}],"concepts":[{"id":"https://openalex.org/C24107716","wikidata":"https://www.wikidata.org/wiki/Q123619","display_name":"Nucleic acid","level":2,"score":0.7242221832275391},{"id":"https://openalex.org/C158693339","wikidata":"https://www.wikidata.org/wiki/Q190524","display_name":"Eigenvalues and eigenvectors","level":2,"score":0.6690397262573242},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.6332029700279236},{"id":"https://openalex.org/C156340839","wikidata":"https://www.wikidata.org/wiki/Q2704791","display_name":"Enumeration","level":2,"score":0.5997612476348877},{"id":"https://openalex.org/C190470478","wikidata":"https://www.wikidata.org/wiki/Q2370229","display_name":"Invariant (physics)","level":2,"score":0.5812610387802124},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.4464329779148102},{"id":"https://openalex.org/C2780841128","wikidata":"https://www.wikidata.org/wiki/Q5073781","display_name":"Characterization (materials science)","level":2,"score":0.4312138855457306},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.4044162631034851},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.32111769914627075},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27754127979278564},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.23232290148735046},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005914","descriptor_name":"Globins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005914","descriptor_name":"Globins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005914","descriptor_name":"Globins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/ci000120q","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci000120q","pdf_url":null,"source":{"id":"https://openalex.org/S171559003","display_name":"Journal of Chemical Information and Computer Sciences","issn_l":"0095-2338","issn":["0095-2338","1520-5142"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Computer Sciences","raw_type":"journal-article"},{"id":"pmid:11410038","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/11410038","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and computer sciences","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":4,"referenced_works":["https://openalex.org/W1488330353","https://openalex.org/W1512018280","https://openalex.org/W1977610286","https://openalex.org/W2015292449"],"related_works":["https://openalex.org/W3199424936","https://openalex.org/W1978042415","https://openalex.org/W23271634","https://openalex.org/W301117870","https://openalex.org/W3083820578","https://openalex.org/W2941394577","https://openalex.org/W2048464858","https://openalex.org/W2061723820","https://openalex.org/W2044927803","https://openalex.org/W2028855340"],"abstract_inverted_index":{"We":[0],"consider":[1],"construction":[2,44],"of":[3,6,22,26,45,54,59,67,70,84,94,96,103,107,113],"a":[4,46,62,92],"set":[5,93],"smaller":[7],"4":[8,10],"x":[9],"matrices":[11,36,58],"to":[12,48,99],"represent":[13],"DNA":[14,60,97],"primary":[15],"sequences":[16,95],"which":[17,68],"are":[18],"based":[19,87],"on":[20,88],"enumeration":[21],"all":[23],"64":[24],"triplets":[25,72],"nucleic":[27],"acids":[28],"bases.":[29],"The":[30],"leading":[31],"eigenvalue":[32],"from":[33],"the":[34,55,65,100,104,111],"constructed":[35],"has":[37],"been":[38],"selected":[39],"as":[40],"an":[41],"invariant":[42],"for":[43,91,117],"vector":[47],"characterize":[49],"DNA.":[50,118],"Additional":[51],"invariants":[52,90,116],"considered":[53],"derived":[56],"condensed":[57],"include":[61],"64-component":[63],"vector,":[64],"components":[66],"consist":[69],"ordered":[71],"XYZ,":[73],"with":[74],"X,":[75],"Y,":[76],"Z":[77],"=":[78],"A,":[79],"C,":[80],"G,":[81],"T.":[82],"Construction":[83],"similarity/dissimilarity":[85],"tables":[86],"different":[89],"belonging":[98],"first":[101],"exon":[102],"beta-globin":[105],"gene":[106],"eight":[108],"species":[109],"illustrates":[110],"utility":[112],"newly":[114],"formulated":[115]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":6},{"year":2012,"cited_by_count":3}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
