{"id":"https://openalex.org/W3081574977","doi":"https://doi.org/10.1021/acs.jcim.9b01202","title":"Emulating Docking Results Using a Deep Neural Network: A New Perspective for Virtual Screening","display_name":"Emulating Docking Results Using a Deep Neural Network: A New Perspective for Virtual Screening","publication_year":2020,"publication_date":"2020-08-31","ids":{"openalex":"https://openalex.org/W3081574977","doi":"https://doi.org/10.1021/acs.jcim.9b01202","mag":"3081574977","pmid":"https://pubmed.ncbi.nlm.nih.gov/32865414"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.9b01202","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.9b01202","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://ruj.uj.edu.pl/xmlui/handle/item/251734","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024552077","display_name":"Stanis\u0142aw Jastrz\u0229bski","orcid":"https://orcid.org/0000-0003-4138-1818"},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Stanis\u0142aw Jastrz\u0119bski","raw_affiliation_strings":["Faculty of Mathematics and Computer Science, Jagiellonian University, 6 \u0141ojasiewicza Street, 30-348 Krak\u00f3w, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics and Computer Science, Jagiellonian University, 6 \u0141ojasiewicza Street, 30-348 Krak\u00f3w, Poland","institution_ids":["https://openalex.org/I126596746"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000192637","display_name":"Maciej Szymczak","orcid":null},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Maciej Szymczak","raw_affiliation_strings":["Faculty of Mathematics and Computer Science, Jagiellonian University, 6 \u0141ojasiewicza Street, 30-348 Krak\u00f3w, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics and Computer Science, Jagiellonian University, 6 \u0141ojasiewicza Street, 30-348 Krak\u00f3w, Poland","institution_ids":["https://openalex.org/I126596746"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110730693","display_name":"Agnieszka Pocha","orcid":null},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Agnieszka Pocha","raw_affiliation_strings":["Faculty of Mathematics and Computer Science, Jagiellonian University, 6 \u0141ojasiewicza Street, 30-348 Krak\u00f3w, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics and Computer Science, Jagiellonian University, 6 \u0141ojasiewicza Street, 30-348 Krak\u00f3w, Poland","institution_ids":["https://openalex.org/I126596746"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072327557","display_name":"Stefan Mordalski","orcid":"https://orcid.org/0000-0003-4089-6369"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I4210120768","display_name":"Maj Institute of Pharmacology","ror":"https://ror.org/0288swk05","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210120768","https://openalex.org/I99542240"]},{"id":"https://openalex.org/I99542240","display_name":"Polish Academy of Sciences","ror":"https://ror.org/01dr6c206","country_code":"PL","type":"government","lineage":["https://openalex.org/I99542240"]}],"countries":["DK","PL"],"is_corresponding":false,"raw_author_name":"Stefan Mordalski","raw_affiliation_strings":["Department of Drug Design and Pharmacology, University of Copenhagen, Universitetsparken 2, 2100 Copenhagen, Denmark","Maj Institute of Pharmacology, Polish Academy of Sciences, 12 Sm\u0119tna Street, 31-343 Krak\u00f3w, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Drug Design and Pharmacology, University of Copenhagen, Universitetsparken 2, 2100 Copenhagen, Denmark","institution_ids":["https://openalex.org/I124055696"]},{"raw_affiliation_string":"Maj Institute of Pharmacology, Polish Academy of Sciences, 12 Sm\u0119tna Street, 31-343 Krak\u00f3w, Poland","institution_ids":["https://openalex.org/I4210120768","https://openalex.org/I99542240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052791052","display_name":"Jacek Tabor","orcid":"https://orcid.org/0000-0001-6652-7727"},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Jacek Tabor","raw_affiliation_strings":["Faculty of Mathematics and Computer Science, Jagiellonian University, 6 \u0141ojasiewicza Street, 30-348 Krak\u00f3w, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics and Computer Science, Jagiellonian University, 6 \u0141ojasiewicza Street, 30-348 Krak\u00f3w, Poland","institution_ids":["https://openalex.org/I126596746"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025399512","display_name":"Andrzej J. Bojarski","orcid":"https://orcid.org/0000-0003-1417-6333"},"institutions":[{"id":"https://openalex.org/I4210120768","display_name":"Maj Institute of Pharmacology","ror":"https://ror.org/0288swk05","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210120768","https://openalex.org/I99542240"]},{"id":"https://openalex.org/I99542240","display_name":"Polish Academy of Sciences","ror":"https://ror.org/01dr6c206","country_code":"PL","type":"government","lineage":["https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Andrzej J. Bojarski","raw_affiliation_strings":["Maj Institute of Pharmacology, Polish Academy of Sciences, 12 Sm\u0119tna Street, 31-343 Krak\u00f3w, Poland"],"raw_orcid":"https://orcid.org/0000-0003-1417-6333","affiliations":[{"raw_affiliation_string":"Maj Institute of Pharmacology, Polish Academy of Sciences, 12 Sm\u0119tna Street, 31-343 Krak\u00f3w, Poland","institution_ids":["https://openalex.org/I4210120768","https://openalex.org/I99542240"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059858209","display_name":"Sabina Podlewska","orcid":"https://orcid.org/0000-0002-2891-5603"},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]},{"id":"https://openalex.org/I4210120768","display_name":"Maj Institute of Pharmacology","ror":"https://ror.org/0288swk05","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210120768","https://openalex.org/I99542240"]},{"id":"https://openalex.org/I99542240","display_name":"Polish Academy of Sciences","ror":"https://ror.org/01dr6c206","country_code":"PL","type":"government","lineage":["https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Sabina Podlewska","raw_affiliation_strings":["Department of Technology and Biotechnology of Drugs, Jagiellonian University Medical College, 9 Medyczna Street, 30-688 Krak\u00f3w, Poland","Maj Institute of Pharmacology, Polish Academy of Sciences, 12 Sm\u0119tna Street, 31-343 Krak\u00f3w, Poland"],"raw_orcid":"https://orcid.org/0000-0002-2891-5603","affiliations":[{"raw_affiliation_string":"Department of Technology and Biotechnology of Drugs, Jagiellonian University Medical College, 9 Medyczna Street, 30-688 Krak\u00f3w, Poland","institution_ids":["https://openalex.org/I126596746"]},{"raw_affiliation_string":"Maj Institute of Pharmacology, Polish Academy of Sciences, 12 Sm\u0119tna Street, 31-343 Krak\u00f3w, Poland","institution_ids":["https://openalex.org/I4210120768","https://openalex.org/I99542240"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5059858209"],"corresponding_institution_ids":["https://openalex.org/I126596746","https://openalex.org/I4210120768","https://openalex.org/I99542240"],"apc_list":null,"apc_paid":null,"fwci":3.4499,"has_fulltext":false,"cited_by_count":32,"citation_normalized_percentile":{"value":0.93918184,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"60","issue":"9","first_page":"4246","last_page":"4262"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11178","display_name":"Receptor Mechanisms and Signaling","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.8260914087295532},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.8122668862342834},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7106519937515259},{"id":"https://openalex.org/keywords/protein\u2013ligand-docking","display_name":"Protein\u2013ligand docking","score":0.47399890422821045},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47297942638397217},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37759220600128174},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.35205578804016113},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34058907628059387},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.3272404968738556},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.20439007878303528},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10865792632102966}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.8260914087295532},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.8122668862342834},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7106519937515259},{"id":"https://openalex.org/C77319485","wikidata":"https://www.wikidata.org/wiki/Q7251520","display_name":"Protein\u2013ligand docking","level":4,"score":0.47399890422821045},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47297942638397217},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37759220600128174},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.35205578804016113},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34058907628059387},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.3272404968738556},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.20439007878303528},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10865792632102966},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012189","descriptor_name":"Retrospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012189","descriptor_name":"Retrospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012189","descriptor_name":"Retrospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D043562","descriptor_name":"Receptors, G-Protein-Coupled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D043562","descriptor_name":"Receptors, G-Protein-Coupled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D043562","descriptor_name":"Receptors, G-Protein-Coupled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1021/acs.jcim.9b01202","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.9b01202","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:32865414","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32865414","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:ruj.uj.edu.pl:item/251734","is_oa":true,"landing_page_url":"https://ruj.uj.edu.pl/xmlui/handle/item/251734","pdf_url":null,"source":{"id":"https://openalex.org/S4306401249","display_name":"Jagiellonian University Repository (Jagiellonian University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I126596746","host_organization_name":"Jagiellonian University","host_organization_lineage":["https://openalex.org/I126596746"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/6a94ece7-1954-446a-9430-f00b3adcf550","is_oa":false,"landing_page_url":"https://researchprofiles.ku.dk/da/publications/6a94ece7-1954-446a-9430-f00b3adcf550","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Jastrzebski , S , Szymczak , M , Pocha , A , Mordalski , S , Tabor , J , Bojarski , A J & Podlewska , S 2020 , ' Emulating Docking Results Using a Deep Neural Network : A New Perspective for Virtual Screening ' , Journal of Chemical Information and Modeling , vol. 60 , no. 9 , pp. 4246-4262 . https://doi.org/10.1021/acs.jcim.9b01202","raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:ruj.uj.edu.pl:item/251734","is_oa":true,"landing_page_url":"https://ruj.uj.edu.pl/xmlui/handle/item/251734","pdf_url":null,"source":{"id":"https://openalex.org/S4306401249","display_name":"Jagiellonian University Repository (Jagiellonian University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I126596746","host_organization_name":"Jagiellonian University","host_organization_lineage":["https://openalex.org/I126596746"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5811496267","display_name":null,"funder_award_id":"OPUS 2018/31/B/NZ2/00165","funder_id":"https://openalex.org/F4320322511","funder_display_name":"Narodowe Centrum Nauki"}],"funders":[{"id":"https://openalex.org/F4320321042","display_name":"Fundacja na rzecz Nauki Polskiej","ror":"https://ror.org/048zd9m77"},{"id":"https://openalex.org/F4320322511","display_name":"Narodowe Centrum Nauki","ror":"https://ror.org/03ha2q922"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":107,"referenced_works":["https://openalex.org/W1174108660","https://openalex.org/W1485382552","https://openalex.org/W1516402388","https://openalex.org/W1562806204","https://openalex.org/W1665214252","https://openalex.org/W1825353903","https://openalex.org/W1968954310","https://openalex.org/W1969027187","https://openalex.org/W1970651561","https://openalex.org/W1973024418","https://openalex.org/W1973974137","https://openalex.org/W1975206909","https://openalex.org/W1978310995","https://openalex.org/W1979166300","https://openalex.org/W1980969309","https://openalex.org/W1983478747","https://openalex.org/W1985588649","https://openalex.org/W1991503277","https://openalex.org/W1991516525","https://openalex.org/W1992041755","https://openalex.org/W1994179575","https://openalex.org/W1999197117","https://openalex.org/W1999798000","https://openalex.org/W2004652899","https://openalex.org/W2006358281","https://openalex.org/W2017663720","https://openalex.org/W2020601776","https://openalex.org/W2023525094","https://openalex.org/W2026501736","https://openalex.org/W2028629022","https://openalex.org/W2030121478","https://openalex.org/W2033757486","https://openalex.org/W2041686943","https://openalex.org/W2044834685","https://openalex.org/W2046589863","https://openalex.org/W2047567287","https://openalex.org/W2051820228","https://openalex.org/W2051994079","https://openalex.org/W2056881083","https://openalex.org/W2059230675","https://openalex.org/W2060874643","https://openalex.org/W2063273962","https://openalex.org/W2066666235","https://openalex.org/W2070098436","https://openalex.org/W2071791280","https://openalex.org/W2077627456","https://openalex.org/W2088423689","https://openalex.org/W2088970363","https://openalex.org/W2090569544","https://openalex.org/W2091734240","https://openalex.org/W2096541451","https://openalex.org/W2100528947","https://openalex.org/W2104477830","https://openalex.org/W2105587896","https://openalex.org/W2111098318","https://openalex.org/W2112411768","https://openalex.org/W2114650590","https://openalex.org/W2120255849","https://openalex.org/W2121776789","https://openalex.org/W2139362074","https://openalex.org/W2140970661","https://openalex.org/W2143482176","https://openalex.org/W2145928638","https://openalex.org/W2146211839","https://openalex.org/W2152354957","https://openalex.org/W2154662590","https://openalex.org/W2156423252","https://openalex.org/W2165492846","https://openalex.org/W2166103367","https://openalex.org/W2168045053","https://openalex.org/W2168966210","https://openalex.org/W2171107240","https://openalex.org/W2176516200","https://openalex.org/W2225513621","https://openalex.org/W2226778269","https://openalex.org/W2234529989","https://openalex.org/W2323576836","https://openalex.org/W2327127510","https://openalex.org/W2375821550","https://openalex.org/W2410846838","https://openalex.org/W2512819857","https://openalex.org/W2519019522","https://openalex.org/W2522341307","https://openalex.org/W2583907533","https://openalex.org/W2587418224","https://openalex.org/W2594183968","https://openalex.org/W2606896306","https://openalex.org/W2731161895","https://openalex.org/W2740946158","https://openalex.org/W2748633757","https://openalex.org/W2773987374","https://openalex.org/W2785720803","https://openalex.org/W2789514702","https://openalex.org/W2789547262","https://openalex.org/W2791091229","https://openalex.org/W2803094965","https://openalex.org/W2860514273","https://openalex.org/W2909048115","https://openalex.org/W2910318997","https://openalex.org/W2912171584","https://openalex.org/W2912884842","https://openalex.org/W2979528896","https://openalex.org/W3027975282","https://openalex.org/W3100751385","https://openalex.org/W3104508774","https://openalex.org/W3104705366","https://openalex.org/W4244219252"],"related_works":["https://openalex.org/W1581147483","https://openalex.org/W2059230675","https://openalex.org/W4310018788","https://openalex.org/W2057846043","https://openalex.org/W2336040088","https://openalex.org/W2027065525","https://openalex.org/W2750247885","https://openalex.org/W2773493604","https://openalex.org/W2269591907","https://openalex.org/W2093426296"],"abstract_inverted_index":{"Docking":[0],"is":[1,14,29,34,74],"one":[2],"of":[3,40,43,54,76,92,109,115,125,151],"the":[4,37,41,52,62,90,93,101,113,123,171,175,179],"most":[5,158],"important":[6],"steps":[7,39],"in":[8,89,143,160,178],"virtual":[9,145],"screening":[10,106,146],"pipelines,":[11],"and":[12,24,32,83,98,139,148],"it":[13,33,84],"an":[15],"established":[16],"method":[17,28,165],"for":[18],"examining":[19],"potential":[20],"interactions":[21],"between":[22],"ligands":[23],"receptors.":[25],"However,":[26],"this":[27,48],"computationally":[30],"expensive,":[31],"often":[35],"among":[36],"last":[38],"process":[42],"compound":[44,69,107],"libraries":[45,108],"evaluation.":[46],"In":[47],"work,":[49],"we":[50],"investigate":[51],"feasibility":[53],"learning":[55],"a":[56,67,149],"deep":[57],"neural":[58],"network":[59,154],"to":[60,156],"predict":[61],"docking":[63,81,119,162],"output":[64],"directly":[65],"from":[66],"two-dimensional":[68],"structure.":[70],"The":[71,164],"developed":[72],"protocol":[73],"orders":[75],"magnitude":[77],"faster":[78],"than":[79],"typical":[80],"software,":[82],"returns":[85],"ligand-receptor":[86],"complexes":[87],"encoded":[88],"form":[91],"interaction":[94,127],"fingerprint.":[95],"Its":[96],"speed":[97],"efficiency":[99],"unlock":[100],"application":[102],"possibilities,":[103],"such":[104],"as":[105],"vast":[110],"size":[111],"on":[112,122,133,174],"basis":[114,124],"contact":[116],"patterns":[117],"or":[118],"score":[120],"(derived":[121],"predicted":[126],"schemes).":[128],"We":[129],"tested":[130],"our":[131],"approach":[132],"several":[134],"G":[135],"protein-coupled":[136],"receptor":[137],"targets":[138],"4":[140],"CYP":[141],"enzymes":[142],"retrospective":[144],"experiments,":[147],"variant":[150],"graph":[152],"convolutional":[153],"appeared":[155],"be":[157,167],"effective":[159],"emulating":[161],"results.":[163],"can":[166],"easily":[168],"used":[169],"by":[170],"community":[172],"based":[173],"code":[176],"available":[177],"Supporting":[180],"Information.":[181]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":1}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
