{"id":"https://openalex.org/W3021730396","doi":"https://doi.org/10.1021/acs.jcim.9b01198","title":"Loop Grafting between Similar Local Environments for Fc-Silent Antibodies","display_name":"Loop Grafting between Similar Local Environments for Fc-Silent Antibodies","publication_year":2020,"publication_date":"2020-05-07","ids":{"openalex":"https://openalex.org/W3021730396","doi":"https://doi.org/10.1021/acs.jcim.9b01198","mag":"3021730396","pmid":"https://pubmed.ncbi.nlm.nih.gov/32379970"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.9b01198","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.9b01198","pdf_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.9b01198","source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.9b01198","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032088268","display_name":"Samo Le\u0161nik","orcid":"https://orcid.org/0000-0002-0613-6959"},"institutions":[{"id":"https://openalex.org/I4210152560","display_name":"National Institute of Chemistry","ror":"https://ror.org/050mac570","country_code":"SI","type":"facility","lineage":["https://openalex.org/I4210152560"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Samo Le\u0161nik","raw_affiliation_strings":["National Institute of Chemistry, Hajdrihova 19, SI-1000 Ljubljana, Slovenia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Chemistry, Hajdrihova 19, SI-1000 Ljubljana, Slovenia","institution_ids":["https://openalex.org/I4210152560"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054295874","display_name":"Milan Hodo\u0161\u010dek","orcid":"https://orcid.org/0000-0002-6728-9318"},"institutions":[{"id":"https://openalex.org/I4210152560","display_name":"National Institute of Chemistry","ror":"https://ror.org/050mac570","country_code":"SI","type":"facility","lineage":["https://openalex.org/I4210152560"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Milan Hodo\u0161\u010dek","raw_affiliation_strings":["National Institute of Chemistry, Hajdrihova 19, SI-1000 Ljubljana, Slovenia"],"raw_orcid":"https://orcid.org/0000-0002-6728-9318","affiliations":[{"raw_affiliation_string":"National Institute of Chemistry, Hajdrihova 19, SI-1000 Ljubljana, Slovenia","institution_ids":["https://openalex.org/I4210152560"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064243539","display_name":"Barbara Podobnik","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Barbara Podobnik","raw_affiliation_strings":["Biologics Technical Development Menge\u0161, Technical Research & Development Novartis, Lek Pharmaceuticals d.d., Kolodvorska 27, SI-1234 Menge\u0161, Slovenia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biologics Technical Development Menge\u0161, Technical Research & Development Novartis, Lek Pharmaceuticals d.d., Kolodvorska 27, SI-1234 Menge\u0161, Slovenia","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007997462","display_name":"Janez Konc","orcid":"https://orcid.org/0000-0003-0160-3375"},"institutions":[{"id":"https://openalex.org/I4210152560","display_name":"National Institute of Chemistry","ror":"https://ror.org/050mac570","country_code":"SI","type":"facility","lineage":["https://openalex.org/I4210152560"]}],"countries":["SI"],"is_corresponding":true,"raw_author_name":"Janez Konc","raw_affiliation_strings":["National Institute of Chemistry, Hajdrihova 19, SI-1000 Ljubljana, Slovenia"],"raw_orcid":"https://orcid.org/0000-0003-0160-3375","affiliations":[{"raw_affiliation_string":"National Institute of Chemistry, Hajdrihova 19, SI-1000 Ljubljana, Slovenia","institution_ids":["https://openalex.org/I4210152560"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5007997462"],"corresponding_institution_ids":["https://openalex.org/I4210152560"],"apc_list":null,"apc_paid":null,"fwci":0.3096,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.59251811,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"60","issue":"11","first_page":"5475","last_page":"5486"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11124","display_name":"Protein purification and stability","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/immunogenicity","display_name":"Immunogenicity","score":0.8761389255523682},{"id":"https://openalex.org/keywords/gene-silencing","display_name":"Gene silencing","score":0.7917811870574951},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.6917184591293335},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.6339645385742188},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.6131103038787842},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.582291305065155},{"id":"https://openalex.org/keywords/monoclonal-antibody","display_name":"Monoclonal antibody","score":0.5821465849876404},{"id":"https://openalex.org/keywords/effector","display_name":"Effector","score":0.5579521059989929},{"id":"https://openalex.org/keywords/fc-receptor","display_name":"Fc receptor","score":0.460171639919281},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.45453009009361267},{"id":"https://openalex.org/keywords/immune-receptor","display_name":"Immune receptor","score":0.4352809190750122},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.4156220555305481},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3894079923629761},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.28750187158584595},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.19558432698249817},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08955809473991394}],"concepts":[{"id":"https://openalex.org/C2780868878","wikidata":"https://www.wikidata.org/wiki/Q1660197","display_name":"Immunogenicity","level":3,"score":0.8761389255523682},{"id":"https://openalex.org/C119056186","wikidata":"https://www.wikidata.org/wiki/Q1431332","display_name":"Gene silencing","level":3,"score":0.7917811870574951},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.6917184591293335},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.6339645385742188},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.6131103038787842},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.582291305065155},{"id":"https://openalex.org/C542903549","wikidata":"https://www.wikidata.org/wiki/Q422248","display_name":"Monoclonal antibody","level":3,"score":0.5821465849876404},{"id":"https://openalex.org/C51785407","wikidata":"https://www.wikidata.org/wiki/Q2627568","display_name":"Effector","level":2,"score":0.5579521059989929},{"id":"https://openalex.org/C2779931124","wikidata":"https://www.wikidata.org/wiki/Q417823","display_name":"Fc receptor","level":3,"score":0.460171639919281},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.45453009009361267},{"id":"https://openalex.org/C103474210","wikidata":"https://www.wikidata.org/wiki/Q142851","display_name":"Immune receptor","level":3,"score":0.4352809190750122},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.4156220555305481},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3894079923629761},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.28750187158584595},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.19558432698249817},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08955809473991394}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000911","descriptor_name":"Antibodies, Monoclonal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000911","descriptor_name":"Antibodies, Monoclonal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000911","descriptor_name":"Antibodies, Monoclonal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007074","descriptor_name":"Immunoglobulin G","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D007074","descriptor_name":"Immunoglobulin G","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D007074","descriptor_name":"Immunoglobulin G","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017452","descriptor_name":"Receptors, IgG","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D017452","descriptor_name":"Receptors, IgG","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D017452","descriptor_name":"Receptors, IgG","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1021/acs.jcim.9b01198","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.9b01198","pdf_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.9b01198","source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:32379970","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32379970","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:dirros.openscience.si:IzpisGradiva.php?id=12763","is_oa":true,"landing_page_url":"https://dirros.openscience.si/IzpisGradiva.php?id=12763","pdf_url":null,"source":{"id":"https://openalex.org/S4377196363","display_name":"DiRROS repository (University of Maribor)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I37696226","host_organization_name":"University of Maribor","host_organization_lineage":["https://openalex.org/I37696226"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling, pp. a-l, 2020.","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7686954","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7686954","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Chem Inf Model","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1021/acs.jcim.9b01198","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.9b01198","pdf_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.9b01198","source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6946677552","display_name":"Novi pristopi za bolj\u0161a biolo\u0161ka zdravila (Slovene)","funder_award_id":"L7-8269","funder_id":"https://openalex.org/F4320322554","funder_display_name":"Javna Agencija za Raziskovalno Dejavnost RS"}],"funders":[{"id":"https://openalex.org/F4320322554","display_name":"Javna Agencija za Raziskovalno Dejavnost RS","ror":"https://ror.org/059bp8k51"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W3021730396.pdf"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W230677038","https://openalex.org/W1515657892","https://openalex.org/W1529809181","https://openalex.org/W1965205681","https://openalex.org/W1969824500","https://openalex.org/W1972687417","https://openalex.org/W1975580333","https://openalex.org/W1978330227","https://openalex.org/W1983188536","https://openalex.org/W1984015691","https://openalex.org/W1989660013","https://openalex.org/W1993963082","https://openalex.org/W2009900556","https://openalex.org/W2023490488","https://openalex.org/W2035179120","https://openalex.org/W2036609771","https://openalex.org/W2038867472","https://openalex.org/W2039870425","https://openalex.org/W2041944580","https://openalex.org/W2042951078","https://openalex.org/W2045837850","https://openalex.org/W2051419785","https://openalex.org/W2057936669","https://openalex.org/W2087340166","https://openalex.org/W2089036873","https://openalex.org/W2095719702","https://openalex.org/W2096863497","https://openalex.org/W2107214337","https://openalex.org/W2109154308","https://openalex.org/W2112157366","https://openalex.org/W2115137384","https://openalex.org/W2119921534","https://openalex.org/W2131736388","https://openalex.org/W2132262459","https://openalex.org/W2138770756","https://openalex.org/W2146146606","https://openalex.org/W2165535543","https://openalex.org/W2167463450","https://openalex.org/W2170149792","https://openalex.org/W2183671649","https://openalex.org/W2399060478","https://openalex.org/W2406703094","https://openalex.org/W2489311180","https://openalex.org/W2571209437","https://openalex.org/W2624798175","https://openalex.org/W2752201538","https://openalex.org/W2766737008","https://openalex.org/W2888809477","https://openalex.org/W2898389621","https://openalex.org/W2921651792","https://openalex.org/W2952711759","https://openalex.org/W2969038446","https://openalex.org/W2980370723","https://openalex.org/W2986511818","https://openalex.org/W4253085957","https://openalex.org/W4295888250"],"related_works":["https://openalex.org/W2914041051","https://openalex.org/W2961677806","https://openalex.org/W2179856687","https://openalex.org/W4282981730","https://openalex.org/W4377011633","https://openalex.org/W4225689494","https://openalex.org/W2601964992","https://openalex.org/W2940239361","https://openalex.org/W4206093339","https://openalex.org/W2412525097"],"abstract_inverted_index":{"Reduction":[0],"of":[1,4,15,35,54,82,101,105,130,159,165,184],"the":[2,5,31,55,70,102,113,128,131,135,163],"affinity":[3],"fragment":[6],"crystallizable":[7],"(Fc)":[8],"region":[9,108],"with":[10,112,145],"immune":[11,32,75,114],"receptors":[12],"by":[13,80],"substitution":[14],"one":[16],"or":[17,192],"a":[18,63,110,124,156],"few":[19],"amino":[20,86,150],"acids,":[21],"known":[22],"as":[23,46,62],"Fc-silencing,":[24,42],"is":[25,44,173],"an":[26,106],"established":[27],"approach":[28,40,65,170],"to":[29,41,50,66,84,123,134,162,171,179],"reduce":[30],"effector":[33],"functions":[34],"monoclonal":[36],"antibody":[37,132,186],"therapeutics.":[38],"This":[39],"however,":[43],"problematic":[45],"it":[47],"can":[48],"lead":[49],"instability":[51,154],"and":[52,95,155,175],"immunogenicity":[53],"developed":[56],"antibodies.":[57,97],"We":[58],"evaluated":[59],"loop":[60,119],"grafting":[61,120],"novel":[64],"Fc-silencing":[67,160,172],"in":[68,92,109,127],"which":[69],"Fc":[71,107],"loops":[72,81],"responsible":[73],"for":[74],"receptor":[76,115],"binding":[77,129],"were":[78],"replaced":[79],"up":[83],"20":[85],"acids":[87,151],"from":[88],"similar":[89],"local":[90],"environments":[91],"other":[93,185],"human":[94],"mouse":[96],"Molecular":[98],"dynamics":[99],"simulations":[100],"designed":[103],"variants":[104,133,144],"complex":[111],"Fc\u03b3IIIa":[116],"confirmed":[117],"that":[118],"potentially":[121],"leads":[122],"significant":[125],"reduction":[126],"receptor,":[136],"while":[137],"retaining":[138],"their":[139,190,194],"stability.":[140],"In":[141],"comparison,":[142],"standard":[143],"less":[146],"than":[147],"eight":[148],"substituted":[149],"showed":[152],"possible":[153],"lower":[157],"degree":[158],"due":[161],"occurrence":[164],"compensatory":[166],"interactions.":[167],"The":[168],"presented":[169],"general":[174],"could":[176],"be":[177],"used":[178],"modulate":[180],"undesirable":[181],"side":[182],"effects":[183],"therapeutics":[187],"without":[188],"affecting":[189],"stability":[191],"increasing":[193],"immunogenicity.":[195]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
