{"id":"https://openalex.org/W3013994540","doi":"https://doi.org/10.1021/acs.jcim.9b01136","title":"Exploring Conformational Space with Thermal Fluctuations Obtained by Normal-Mode Analysis","display_name":"Exploring Conformational Space with Thermal Fluctuations Obtained by Normal-Mode Analysis","publication_year":2020,"publication_date":"2020-03-27","ids":{"openalex":"https://openalex.org/W3013994540","doi":"https://doi.org/10.1021/acs.jcim.9b01136","mag":"3013994540","pmid":"https://pubmed.ncbi.nlm.nih.gov/32216314"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.9b01136","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.9b01136","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/11336/168652","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069463285","display_name":"Tadeo E. Salda\u00f1o","orcid":null},"institutions":[{"id":"https://openalex.org/I138504249","display_name":"National University of Quilmes","ror":"https://ror.org/01r53hz59","country_code":"AR","type":"education","lineage":["https://openalex.org/I138504249"]},{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Tadeo E. Salda\u00f1o","raw_affiliation_strings":["Universidad Nacional de Quilmes/CONICET, Roque Saenz Pe\u00f1a 352, B1876BXD Bernal, Argentina"],"affiliations":[{"raw_affiliation_string":"Universidad Nacional de Quilmes/CONICET, Roque Saenz Pe\u00f1a 352, B1876BXD Bernal, Argentina","institution_ids":["https://openalex.org/I138504249","https://openalex.org/I151201029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017383266","display_name":"Victor M. Freixas","orcid":"https://orcid.org/0000-0003-1733-4827"},"institutions":[{"id":"https://openalex.org/I138504249","display_name":"National University of Quilmes","ror":"https://ror.org/01r53hz59","country_code":"AR","type":"education","lineage":["https://openalex.org/I138504249"]},{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Victor M. Freixas","raw_affiliation_strings":["Universidad Nacional de Quilmes/CONICET, Roque Saenz Pe\u00f1a 352, B1876BXD Bernal, Argentina"],"affiliations":[{"raw_affiliation_string":"Universidad Nacional de Quilmes/CONICET, Roque Saenz Pe\u00f1a 352, B1876BXD Bernal, Argentina","institution_ids":["https://openalex.org/I138504249","https://openalex.org/I151201029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066560665","display_name":"Silvio C. E. Tosatto","orcid":"https://orcid.org/0000-0003-4525-7793"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Silvio C. E. Tosatto","raw_affiliation_strings":["Department of Biomedical Sciences, University of Padova, Viale G. Colombo 3, 5131 Padova, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, University of Padova, Viale G. Colombo 3, 5131 Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037751052","display_name":"Gustavo Parisi","orcid":"https://orcid.org/0000-0001-7444-1624"},"institutions":[{"id":"https://openalex.org/I138504249","display_name":"National University of Quilmes","ror":"https://ror.org/01r53hz59","country_code":"AR","type":"education","lineage":["https://openalex.org/I138504249"]},{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Gustavo Parisi","raw_affiliation_strings":["Universidad Nacional de Quilmes/CONICET, Roque Saenz Pe\u00f1a 352, B1876BXD Bernal, Argentina"],"affiliations":[{"raw_affiliation_string":"Universidad Nacional de Quilmes/CONICET, Roque Saenz Pe\u00f1a 352, B1876BXD Bernal, Argentina","institution_ids":["https://openalex.org/I138504249","https://openalex.org/I151201029"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010781133","display_name":"Sebastian Fern\u00e1ndez-Alberti","orcid":"https://orcid.org/0000-0002-0916-5069"},"institutions":[{"id":"https://openalex.org/I138504249","display_name":"National University of Quilmes","ror":"https://ror.org/01r53hz59","country_code":"AR","type":"education","lineage":["https://openalex.org/I138504249"]},{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]}],"countries":["AR"],"is_corresponding":true,"raw_author_name":"Sebastian Fernandez-Alberti","raw_affiliation_strings":["Universidad Nacional de Quilmes/CONICET, Roque Saenz Pe\u00f1a 352, B1876BXD Bernal, Argentina"],"affiliations":[{"raw_affiliation_string":"Universidad Nacional de Quilmes/CONICET, Roque Saenz Pe\u00f1a 352, B1876BXD Bernal, Argentina","institution_ids":["https://openalex.org/I138504249","https://openalex.org/I151201029"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5010781133"],"corresponding_institution_ids":["https://openalex.org/I138504249","https://openalex.org/I151201029"],"apc_list":null,"apc_paid":null,"fwci":0.3343,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.56401182,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"60","issue":"6","first_page":"3068","last_page":"3080"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10407","display_name":"Lipid Membrane Structure and Behavior","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11177","display_name":"Spectroscopy and Quantum Chemical Studies","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/conformational-isomerism","display_name":"Conformational isomerism","score":0.858046293258667},{"id":"https://openalex.org/keywords/conformational-ensembles","display_name":"Conformational ensembles","score":0.6377350091934204},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.5891966223716736},{"id":"https://openalex.org/keywords/conformational-change","display_name":"Conformational change","score":0.5412561297416687},{"id":"https://openalex.org/keywords/normal-mode","display_name":"Normal mode","score":0.4907175302505493},{"id":"https://openalex.org/keywords/space","display_name":"Space (punctuation)","score":0.47235143184661865},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.4429870843887329},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.38678449392318726},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3714585602283478},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.3356887102127075},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.272810697555542},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.27102798223495483},{"id":"https://openalex.org/keywords/stereochemistry","display_name":"Stereochemistry","score":0.18966469168663025},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.1295316517353058},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.0927882194519043}],"concepts":[{"id":"https://openalex.org/C18705241","wikidata":"https://www.wikidata.org/wiki/Q1128023","display_name":"Conformational isomerism","level":3,"score":0.858046293258667},{"id":"https://openalex.org/C2777936996","wikidata":"https://www.wikidata.org/wiki/Q17148461","display_name":"Conformational ensembles","level":3,"score":0.6377350091934204},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.5891966223716736},{"id":"https://openalex.org/C2777339483","wikidata":"https://www.wikidata.org/wiki/Q647203","display_name":"Conformational change","level":2,"score":0.5412561297416687},{"id":"https://openalex.org/C32758168","wikidata":"https://www.wikidata.org/wiki/Q900488","display_name":"Normal mode","level":3,"score":0.4907175302505493},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.47235143184661865},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.4429870843887329},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.38678449392318726},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3714585602283478},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.3356887102127075},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.272810697555542},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.27102798223495483},{"id":"https://openalex.org/C71240020","wikidata":"https://www.wikidata.org/wiki/Q186011","display_name":"Stereochemistry","level":1,"score":0.18966469168663025},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.1295316517353058},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0927882194519043},{"id":"https://openalex.org/C198394728","wikidata":"https://www.wikidata.org/wiki/Q3695508","display_name":"Vibration","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1021/acs.jcim.9b01136","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.9b01136","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:32216314","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32216314","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:ri.conicet.gov.ar:11336/168652","is_oa":true,"landing_page_url":"http://hdl.handle.net/11336/168652","pdf_url":null,"source":{"id":"https://openalex.org/S4306401400","display_name":"Conicet","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210104196","host_organization_name":"Centro Cient\u00edfico Tecnol\u00f3gico - Nordeste","host_organization_lineage":["https://openalex.org/I4210104196"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:www.research.unipd.it:11577/3352751","is_oa":true,"landing_page_url":"http://hdl.handle.net/11577/3352751","pdf_url":null,"source":{"id":"https://openalex.org/S4306402547","display_name":"Padua Research Archive (University of Padova)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:ri.conicet.gov.ar:11336/168652","is_oa":true,"landing_page_url":"http://hdl.handle.net/11336/168652","pdf_url":null,"source":{"id":"https://openalex.org/S4306401400","display_name":"Conicet","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210104196","host_organization_name":"Centro Cient\u00edfico Tecnol\u00f3gico - Nordeste","host_organization_lineage":["https://openalex.org/I4210104196"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1399868882","display_name":null,"funder_award_id":"PUNQ 1004/11","funder_id":"https://openalex.org/F4320325873","funder_display_name":"Universidad Nacional de Quilmes"},{"id":"https://openalex.org/G3136951092","display_name":null,"funder_award_id":"778247","funder_id":"https://openalex.org/F4320338337","funder_display_name":"H2020 Marie Sk\u0142odowska-Curie Actions"}],"funders":[{"id":"https://openalex.org/F4320321594","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59"},{"id":"https://openalex.org/F4320325873","display_name":"Universidad Nacional de Quilmes","ror":"https://ror.org/01r53hz59"},{"id":"https://openalex.org/F4320338337","display_name":"H2020 Marie Sk\u0142odowska-Curie Actions","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":114,"referenced_works":["https://openalex.org/W149235922","https://openalex.org/W164338239","https://openalex.org/W379390718","https://openalex.org/W1512693490","https://openalex.org/W1559298968","https://openalex.org/W1591736283","https://openalex.org/W1964412608","https://openalex.org/W1964605826","https://openalex.org/W1965965344","https://openalex.org/W1968407616","https://openalex.org/W1969548780","https://openalex.org/W1969723894","https://openalex.org/W1970454429","https://openalex.org/W1975818112","https://openalex.org/W1977630495","https://openalex.org/W1978920362","https://openalex.org/W1979154012","https://openalex.org/W1980430311","https://openalex.org/W1983353234","https://openalex.org/W1987104859","https://openalex.org/W1987159249","https://openalex.org/W1993410009","https://openalex.org/W1994059052","https://openalex.org/W1997477098","https://openalex.org/W1997486650","https://openalex.org/W1998093640","https://openalex.org/W1999040803","https://openalex.org/W2000056843","https://openalex.org/W2001449162","https://openalex.org/W2002288024","https://openalex.org/W2003412353","https://openalex.org/W2004126244","https://openalex.org/W2020446183","https://openalex.org/W2021769046","https://openalex.org/W2025190578","https://openalex.org/W2028343389","https://openalex.org/W2030448721","https://openalex.org/W2031340110","https://openalex.org/W2040809566","https://openalex.org/W2040858214","https://openalex.org/W2041694664","https://openalex.org/W2048287651","https://openalex.org/W2049682677","https://openalex.org/W2055898129","https://openalex.org/W2056637556","https://openalex.org/W2057594534","https://openalex.org/W2059928115","https://openalex.org/W2060665868","https://openalex.org/W2061095840","https://openalex.org/W2066962978","https://openalex.org/W2069777230","https://openalex.org/W2074382324","https://openalex.org/W2074512072","https://openalex.org/W2081492752","https://openalex.org/W2082028745","https://openalex.org/W2082798563","https://openalex.org/W2087495141","https://openalex.org/W2091326717","https://openalex.org/W2096619551","https://openalex.org/W2096929343","https://openalex.org/W2097081229","https://openalex.org/W2097412382","https://openalex.org/W2098787719","https://openalex.org/W2102449622","https://openalex.org/W2105438341","https://openalex.org/W2106531843","https://openalex.org/W2106648157","https://openalex.org/W2106777560","https://openalex.org/W2108196145","https://openalex.org/W2113994268","https://openalex.org/W2115354442","https://openalex.org/W2115666908","https://openalex.org/W2119267663","https://openalex.org/W2119822484","https://openalex.org/W2119915462","https://openalex.org/W2120781005","https://openalex.org/W2127362915","https://openalex.org/W2129931931","https://openalex.org/W2135900956","https://openalex.org/W2140889378","https://openalex.org/W2141109380","https://openalex.org/W2142207967","https://openalex.org/W2144581781","https://openalex.org/W2147466870","https://openalex.org/W2149301682","https://openalex.org/W2149830121","https://openalex.org/W2155782989","https://openalex.org/W2156790586","https://openalex.org/W2161252555","https://openalex.org/W2166245415","https://openalex.org/W2170665034","https://openalex.org/W2171002664","https://openalex.org/W2178096376","https://openalex.org/W2265800909","https://openalex.org/W2308552187","https://openalex.org/W2315174892","https://openalex.org/W2318922533","https://openalex.org/W2319900881","https://openalex.org/W2322463084","https://openalex.org/W2323759742","https://openalex.org/W2395425574","https://openalex.org/W2413334978","https://openalex.org/W2491917380","https://openalex.org/W2541800761","https://openalex.org/W2555608080","https://openalex.org/W2594681819","https://openalex.org/W2610329791","https://openalex.org/W2763945826","https://openalex.org/W2765322245","https://openalex.org/W2773701219","https://openalex.org/W2896056828","https://openalex.org/W2949760854","https://openalex.org/W2981948585","https://openalex.org/W3105947590"],"related_works":["https://openalex.org/W2610329791","https://openalex.org/W2167062204","https://openalex.org/W2331455101","https://openalex.org/W2010222695","https://openalex.org/W2524894277","https://openalex.org/W2036671569","https://openalex.org/W2065235574","https://openalex.org/W2031928292","https://openalex.org/W2155782989","https://openalex.org/W2176923725"],"abstract_inverted_index":{"Proteins":[0],"in":[1,12],"their":[2,67],"native":[3],"states":[4],"can":[5,75],"be":[6,76],"represented":[7],"as":[8],"ensembles":[9],"of":[10,40,83,111,165],"conformers":[11],"dynamical":[13],"equilibrium.":[14],"Thermal":[15],"fluctuations":[16],"are":[17],"responsible":[18],"for":[19],"transitions":[20],"between":[21,134],"these":[22],"conformers.":[23],"Normal-modes":[24],"analysis":[25],"(NMA)":[26],"using":[27],"elastic":[28],"network":[29],"models":[30],"(ENMs)":[31],"provides":[32],"an":[33,53],"efficient":[34],"procedure":[35],"to":[36,56,66,79,87,102,153,160],"explore":[37,57,88],"global":[38],"dynamics":[39,69],"proteins":[41,107],"commonly":[42],"associated":[43],"with":[44,108],"conformational":[45,59,84,124,132,157,168],"transitions.":[46],"In":[47,100,120],"the":[48,123,131,150,166],"present":[49,52],"work,":[50],"we":[51],"iterative":[54],"approach":[55,74],"protein":[58,167],"spaces":[60],"by":[61],"introducing":[62],"structural":[63,112],"distortions":[64,113],"according":[65],"equilibrium":[68],"at":[70],"room":[71],"temperature.":[72],"The":[73],"used":[77],"either":[78,152],"perform":[80],"unbiased":[81],"explorations":[82],"space":[85,133],"or":[86,159],"guided":[89],"pathways":[90],"connecting":[91],"two":[92],"different":[93,109],"conformations,":[94],"e.g.,":[95],"apo":[96,135],"and":[97,130,136],"holo":[98,137],"forms.":[99],"order":[101],"test":[103],"its":[104],"performance,":[105],"four":[106],"magnitudes":[110],"upon":[114],"ligand":[115],"binding":[116],"have":[117,144],"been":[118,128,140,145],"tested.":[119],"all":[121],"cases,":[122],"selection":[125],"model":[126],"has":[127,139],"confirmed":[129],"forms":[138],"encompassed.":[141],"Different":[142],"strategies":[143],"tested":[146],"that":[147],"impact":[148],"on":[149],"efficiency":[151],"achieve":[154,161],"a":[155,162],"desired":[156],"change":[158],"balanced":[163],"exploration":[164],"multiplicity.":[169]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
