{"id":"https://openalex.org/W3009923748","doi":"https://doi.org/10.1021/acs.jcim.9b00945","title":"A Robotics-Inspired Screening Algorithm for Molecular Caging Prediction","display_name":"A Robotics-Inspired Screening Algorithm for Molecular Caging Prediction","publication_year":2020,"publication_date":"2020-03-04","ids":{"openalex":"https://openalex.org/W3009923748","doi":"https://doi.org/10.1021/acs.jcim.9b00945","mag":"3009923748","pmid":"https://pubmed.ncbi.nlm.nih.gov/32130862"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.9b00945","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.9b00945","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1021/acs.jcim.9b00945","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110389258","display_name":"Oleksandr Kravchenko","orcid":null},"institutions":[{"id":"https://openalex.org/I86987016","display_name":"KTH Royal Institute of Technology","ror":"https://ror.org/026vcq606","country_code":"SE","type":"education","lineage":["https://openalex.org/I86987016"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Oleksandr Kravchenko","raw_affiliation_strings":["Department of Chemistry, School of Engineering Sciences in Chemistry, Biology and Health (CBH), KTH Royal Institute of Technology, 11428 Stockholm, Sweden"],"raw_orcid":"https://orcid.org/0000-0002-9001-7708","affiliations":[{"raw_affiliation_string":"Department of Chemistry, School of Engineering Sciences in Chemistry, Biology and Health (CBH), KTH Royal Institute of Technology, 11428 Stockholm, Sweden","institution_ids":["https://openalex.org/I86987016"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010206538","display_name":"Anastasiia Varava","orcid":"https://orcid.org/0000-0002-0900-1523"},"institutions":[{"id":"https://openalex.org/I86987016","display_name":"KTH Royal Institute of Technology","ror":"https://ror.org/026vcq606","country_code":"SE","type":"education","lineage":["https://openalex.org/I86987016"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Anastasiia Varava","raw_affiliation_strings":["Division of Robotics, Perception and Learning (RPL), School of Electrical Engineering and Computer Science (EECS), KTH Royal Institute of Technology, 10044 Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Robotics, Perception and Learning (RPL), School of Electrical Engineering and Computer Science (EECS), KTH Royal Institute of Technology, 10044 Stockholm, Sweden","institution_ids":["https://openalex.org/I86987016"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018027629","display_name":"Florian T. Pokorny","orcid":"https://orcid.org/0000-0003-1114-6040"},"institutions":[{"id":"https://openalex.org/I86987016","display_name":"KTH Royal Institute of Technology","ror":"https://ror.org/026vcq606","country_code":"SE","type":"education","lineage":["https://openalex.org/I86987016"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Florian T. Pokorny","raw_affiliation_strings":["Division of Robotics, Perception and Learning (RPL), School of Electrical Engineering and Computer Science (EECS), KTH Royal Institute of Technology, 10044 Stockholm, Sweden"],"raw_orcid":"https://orcid.org/0000-0003-1114-6040","affiliations":[{"raw_affiliation_string":"Division of Robotics, Perception and Learning (RPL), School of Electrical Engineering and Computer Science (EECS), KTH Royal Institute of Technology, 10044 Stockholm, Sweden","institution_ids":["https://openalex.org/I86987016"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090227170","display_name":"Didier Devaurs","orcid":"https://orcid.org/0000-0002-3415-9816"},"institutions":[{"id":"https://openalex.org/I106785703","display_name":"Institut polytechnique de Grenoble","ror":"https://ror.org/05sbt2524","country_code":"FR","type":"education","lineage":["https://openalex.org/I106785703","https://openalex.org/I899635006"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210101348","display_name":"Centre Inria de l'Universit\u00e9 Grenoble Alpes","ror":"https://ror.org/00n8d6z93","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210101348"]},{"id":"https://openalex.org/I4210149092","display_name":"Laboratoire Jean Kuntzmann","ror":"https://ror.org/04ett5b41","country_code":"FR","type":"facility","lineage":["https://openalex.org/I106785703","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210149092","https://openalex.org/I899635006","https://openalex.org/I899635006"]},{"id":"https://openalex.org/I899635006","display_name":"Universit\u00e9 Grenoble Alpes","ror":"https://ror.org/02rx3b187","country_code":"FR","type":"education","lineage":["https://openalex.org/I899635006"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Didier Devaurs","raw_affiliation_strings":["Univ. Grenoble Alpes, CNRS, Inria, Grenoble INP (Institute of Engineering, Universit\u00e9 Grenoble Alpes), LJK, 38000 Grenoble, France"],"raw_orcid":"https://orcid.org/0000-0002-3415-9816","affiliations":[{"raw_affiliation_string":"Univ. Grenoble Alpes, CNRS, Inria, Grenoble INP (Institute of Engineering, Universit\u00e9 Grenoble Alpes), LJK, 38000 Grenoble, France","institution_ids":["https://openalex.org/I899635006","https://openalex.org/I106785703","https://openalex.org/I4210149092","https://openalex.org/I4210101348","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067205988","display_name":"Lydia E. Kavraki","orcid":"https://orcid.org/0000-0003-0699-8038"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Lydia E. Kavraki","raw_affiliation_strings":["Department of Computer Science, Rice University, Houston, Texas 77005, United States"],"raw_orcid":"https://orcid.org/0000-0003-0699-8038","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Rice University, Houston, Texas 77005, United States","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023792180","display_name":"Danica Kragi\u0107","orcid":"https://orcid.org/0000-0003-2965-2953"},"institutions":[{"id":"https://openalex.org/I86987016","display_name":"KTH Royal Institute of Technology","ror":"https://ror.org/026vcq606","country_code":"SE","type":"education","lineage":["https://openalex.org/I86987016"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Danica Kragic","raw_affiliation_strings":["Division of Robotics, Perception and Learning (RPL), School of Electrical Engineering and Computer Science (EECS), KTH Royal Institute of Technology, 10044 Stockholm, Sweden"],"raw_orcid":"https://orcid.org/0000-0003-2965-2953","affiliations":[{"raw_affiliation_string":"Division of Robotics, Perception and Learning (RPL), School of Electrical Engineering and Computer Science (EECS), KTH Royal Institute of Technology, 10044 Stockholm, Sweden","institution_ids":["https://openalex.org/I86987016"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5023792180","https://openalex.org/A5067205988","https://openalex.org/A5110389258"],"corresponding_institution_ids":["https://openalex.org/I74775410","https://openalex.org/I86987016"],"apc_list":null,"apc_paid":null,"fwci":0.5016,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.61953141,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"60","issue":"3","first_page":"1302","last_page":"1316"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10578","display_name":"Supramolecular Chemistry and Complexes","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5799494981765747},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5661487579345703},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5138857364654541},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.4799495041370392},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4274331331253052},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42259493470191956},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.24606263637542725}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5799494981765747},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5661487579345703},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5138857364654541},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.4799495041370392},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4274331331253052},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42259493470191956},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.24606263637542725},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1021/acs.jcim.9b00945","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.9b00945","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:32130862","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32130862","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:strathprints.strath.ac.uk:90236","is_oa":false,"landing_page_url":"https://strathprints.strath.ac.uk/view/author/1575936.html>","pdf_url":null,"source":{"id":"https://openalex.org/S4306402226","display_name":"Strathprints: The University of Strathclyde institutional repository (University of Strathclyde)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I181647926","host_organization_name":"University of Strathclyde","host_organization_lineage":["https://openalex.org/I181647926"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:pubmedcentral.nih.gov:7307881","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7307881","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Chem Inf Model","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1021/acs.jcim.9b00945","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.9b00945","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.550000011920929,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320310133","display_name":"Rice University","ror":"https://ror.org/008zs3103"},{"id":"https://openalex.org/F4320322327","display_name":"Knut och Alice Wallenbergs Stiftelse","ror":"https://ror.org/004hzzk67"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":57,"referenced_works":["https://openalex.org/W35752629","https://openalex.org/W120156214","https://openalex.org/W1497473266","https://openalex.org/W1521042556","https://openalex.org/W1968546605","https://openalex.org/W1979773875","https://openalex.org/W1981487976","https://openalex.org/W1981667747","https://openalex.org/W1981682397","https://openalex.org/W2000989371","https://openalex.org/W2030841140","https://openalex.org/W2031717939","https://openalex.org/W2034530793","https://openalex.org/W2036836465","https://openalex.org/W2038117078","https://openalex.org/W2038545753","https://openalex.org/W2039342899","https://openalex.org/W2046178935","https://openalex.org/W2049604820","https://openalex.org/W2053294416","https://openalex.org/W2059217294","https://openalex.org/W2061776255","https://openalex.org/W2073276247","https://openalex.org/W2084879615","https://openalex.org/W2127803531","https://openalex.org/W2129358707","https://openalex.org/W2138085558","https://openalex.org/W2149934794","https://openalex.org/W2155437952","https://openalex.org/W2157942880","https://openalex.org/W2162109487","https://openalex.org/W2168843969","https://openalex.org/W2239353254","https://openalex.org/W2273387398","https://openalex.org/W2289299303","https://openalex.org/W2314501155","https://openalex.org/W2320723442","https://openalex.org/W2334549288","https://openalex.org/W2394659355","https://openalex.org/W2500001324","https://openalex.org/W2503558142","https://openalex.org/W2504105902","https://openalex.org/W2521265935","https://openalex.org/W2559246072","https://openalex.org/W2596279921","https://openalex.org/W2605029885","https://openalex.org/W2644617594","https://openalex.org/W2751276040","https://openalex.org/W2883550289","https://openalex.org/W2889593484","https://openalex.org/W2892214103","https://openalex.org/W2904897818","https://openalex.org/W2905317118","https://openalex.org/W2965510933","https://openalex.org/W2973711994","https://openalex.org/W4251695039","https://openalex.org/W4312969301"],"related_works":["https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W3037187668","https://openalex.org/W2053286651","https://openalex.org/W2181743346","https://openalex.org/W2187401768","https://openalex.org/W2181413294","https://openalex.org/W2989452537","https://openalex.org/W4234772502","https://openalex.org/W2052122378"],"abstract_inverted_index":{"as":[0,38,69],"a":[1,14,53,66,93,100,106,114,143,166,170,204],"pair":[2,102],"of":[3,61,103,136,174],"molecules":[4,104,137],"in":[5,35,47,126,142],"which":[6,186],"one":[7,76],"molecule":[8,21,77],"(the":[9,22],"\"host\"":[10],"or":[11],"\"cage\")":[12],"possesses":[13],"cavity":[15],"that":[16,97,118,138,152],"can":[17,32,78,84,200],"encapsulate":[18,79],"the":[19,56,159],"other":[20],"\"guest\")":[23],"and":[24,44,58,150,177,180,199],"prevent":[25],"it":[26,70],"from":[27],"escaping.":[28],"Molecular":[29],"caging":[30,63,107,115,148,192],"complexes":[31,64,149],"be":[33,85,201],"useful":[34],"applications":[36,125],"such":[37],"molecular":[39,45,147],"shape":[40],"sorting,":[41],"drug":[42],"delivery,":[43],"immobilization":[46],"materials":[48],"science,":[49],"to":[50,73,184,190,207],"name":[51],"just":[52],"few.":[54],"However,":[55],"design":[57],"computational":[59,94],"discovery":[60],"new":[62],"is":[65,71,111,196],"challenging":[67],"task,":[68],"hard":[72],"predict":[74,185],"whether":[75,99],"another":[80],"because":[81],"their":[82],"shapes":[83],"quite":[86],"complex.":[87,108],"In":[88],"this":[89],"paper,":[90],"we":[91,164],"propose":[92],"screening":[95,167,205],"method":[96,110,195],"predicts":[98],"given":[101],"form":[105,191],"Our":[109,194],"based":[112],"on":[113,133,146,169],"verification":[116],"algorithm":[117,132,183],"was":[119],"designed":[120],"by":[121],"our":[122,131,153,182],"group":[123],"for":[124],"robotic":[127],"manipulation.":[128],"We":[129],"tested":[130],"three":[134],"pairs":[135,187],"were":[139],"previously":[140,160],"described":[141],"pioneering":[144],"work":[145],"found":[151],"results":[154],"are":[155,188],"fully":[156],"consistent":[157],"with":[158],"reported":[161],"ones.":[162],"Furthermore,":[163],"performed":[165],"experiment":[168],"data":[171],"set":[172],"consisting":[173],"46":[175],"hosts":[176],"four":[178],"guests":[179],"used":[181],"likely":[189],"complexes.":[193],"computationally":[197],"efficient":[198],"integrated":[202],"into":[203],"pipeline":[206],"complement":[208],"experimental":[209],"techniques.":[210]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":2}],"updated_date":"2026-04-28T14:05:53.105641","created_date":"2025-10-10T00:00:00"}
