{"id":"https://openalex.org/W3005002943","doi":"https://doi.org/10.1021/acs.jcim.9b00938","title":"FragPELE: Dynamic Ligand Growing within a Binding Site. A Novel Tool for Hit-To-Lead Drug Design","display_name":"FragPELE: Dynamic Ligand Growing within a Binding Site. A Novel Tool for Hit-To-Lead Drug Design","publication_year":2020,"publication_date":"2020-02-06","ids":{"openalex":"https://openalex.org/W3005002943","doi":"https://doi.org/10.1021/acs.jcim.9b00938","mag":"3005002943","pmid":"https://pubmed.ncbi.nlm.nih.gov/32027130"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.9b00938","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.9b00938","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/2117/187045","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034824547","display_name":"Carles Perez\u2010Lopez","orcid":"https://orcid.org/0000-0002-2876-0947"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Carles Perez","raw_affiliation_strings":["Life Sciences Department, Barcelona Supercomputing Center (BSC), Barcelona 08034, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Life Sciences Department, Barcelona Supercomputing Center (BSC), Barcelona 08034, Spain","institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046145504","display_name":"Daniel Soler","orcid":"https://orcid.org/0000-0003-3274-2482"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Daniel Soler","raw_affiliation_strings":["Nostrum Biodiscovery, Carrer Jordi Girona 29, Nexus II D128, 08034 Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nostrum Biodiscovery, Carrer Jordi Girona 29, Nexus II D128, 08034 Barcelona, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076261876","display_name":"Robert Soliva","orcid":"https://orcid.org/0000-0003-0628-4342"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Robert Soliva","raw_affiliation_strings":["Nostrum Biodiscovery, Carrer Jordi Girona 29, Nexus II D128, 08034 Barcelona, Spain"],"raw_orcid":"https://orcid.org/0000-0003-0628-4342","affiliations":[{"raw_affiliation_string":"Nostrum Biodiscovery, Carrer Jordi Girona 29, Nexus II D128, 08034 Barcelona, Spain","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060698638","display_name":"V\u0131\u0301ctor Guallar","orcid":"https://orcid.org/0000-0002-4580-1114"},"institutions":[{"id":"https://openalex.org/I11932220","display_name":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats","ror":"https://ror.org/0371hy230","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I11932220"]},{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Victor Guallar","raw_affiliation_strings":["ICREA: Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats, Passeig Llu\u00eds Companys 23, 08010 Barcelona, Spain","Life Sciences Department, Barcelona Supercomputing Center (BSC), Barcelona 08034, Spain"],"raw_orcid":"https://orcid.org/0000-0002-4580-1114","affiliations":[{"raw_affiliation_string":"ICREA: Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats, Passeig Llu\u00eds Companys 23, 08010 Barcelona, Spain","institution_ids":["https://openalex.org/I11932220"]},{"raw_affiliation_string":"Life Sciences Department, Barcelona Supercomputing Center (BSC), Barcelona 08034, Spain","institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5060698638"],"corresponding_institution_ids":["https://openalex.org/I11932220","https://openalex.org/I2799803557","https://openalex.org/I9617848"],"apc_list":null,"apc_paid":null,"fwci":1.7755,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.87851008,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"60","issue":"3","first_page":"1728","last_page":"1736"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10163","display_name":"Metal complexes synthesis and properties","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11281","display_name":"Asymmetric Hydrogenation and Catalysis","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1604","display_name":"Inorganic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lead","display_name":"Lead (geology)","score":0.6086499094963074},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.5913877487182617},{"id":"https://openalex.org/keywords/ligand","display_name":"Ligand (biochemistry)","score":0.5027461051940918},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.46987611055374146},{"id":"https://openalex.org/keywords/drug-drug-interaction","display_name":"Drug-drug interaction","score":0.437198281288147},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.42660874128341675},{"id":"https://openalex.org/keywords/lead-compound","display_name":"Lead compound","score":0.41027212142944336},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40334972739219666},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.37749654054641724},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.3058066666126251},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1739371418952942},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16474780440330505},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.14662402868270874},{"id":"https://openalex.org/keywords/in-vitro","display_name":"In vitro","score":0.0691629946231842},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.06604620814323425}],"concepts":[{"id":"https://openalex.org/C2777093003","wikidata":"https://www.wikidata.org/wiki/Q6508345","display_name":"Lead (geology)","level":2,"score":0.6086499094963074},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.5913877487182617},{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.5027461051940918},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.46987611055374146},{"id":"https://openalex.org/C2910466267","wikidata":"https://www.wikidata.org/wiki/Q718753","display_name":"Drug-drug interaction","level":3,"score":0.437198281288147},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.42660874128341675},{"id":"https://openalex.org/C2777752112","wikidata":"https://www.wikidata.org/wiki/Q903238","display_name":"Lead compound","level":3,"score":0.41027212142944336},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40334972739219666},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.37749654054641724},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.3058066666126251},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1739371418952942},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16474780440330505},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.14662402868270874},{"id":"https://openalex.org/C202751555","wikidata":"https://www.wikidata.org/wiki/Q221681","display_name":"In vitro","level":2,"score":0.0691629946231842},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.06604620814323425},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1021/acs.jcim.9b00938","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.9b00938","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:32027130","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32027130","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:dnet:upcommonspor::92417a08a3df82797920af7078b03f24","is_oa":true,"landing_page_url":"http://hdl.handle.net/2117/187045","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/submittedVersion"},{"id":"pmh:oai:upcommons.upc.edu:2117/187045","is_oa":true,"landing_page_url":"https://hdl.handle.net/2117/187045","pdf_url":null,"source":{"id":"https://openalex.org/S4377196262","display_name":"UPCommons institutional repository (Universitat Polit\u00e8cnica de Catalunya)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I9617848","host_organization_name":"Universitat Polit\u00e8cnica de Catalunya","host_organization_lineage":["https://openalex.org/I9617848"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"}],"best_oa_location":{"id":"pmh:oai:dnet:upcommonspor::92417a08a3df82797920af7078b03f24","is_oa":true,"landing_page_url":"http://hdl.handle.net/2117/187045","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/submittedVersion"},"sustainable_development_goals":[{"score":0.6200000047683716,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G5896440743","display_name":null,"funder_award_id":"RTC-2017-6295-1","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G8354320147","display_name":null,"funder_award_id":"CTQ2016-79138-R","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"}],"funders":[{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W1500036797","https://openalex.org/W1971652848","https://openalex.org/W1976169633","https://openalex.org/W1977891475","https://openalex.org/W1984524663","https://openalex.org/W2005135448","https://openalex.org/W2016271327","https://openalex.org/W2025006523","https://openalex.org/W2031142437","https://openalex.org/W2031168104","https://openalex.org/W2041686943","https://openalex.org/W2042076664","https://openalex.org/W2046813714","https://openalex.org/W2051381895","https://openalex.org/W2056188446","https://openalex.org/W2078048835","https://openalex.org/W2095719702","https://openalex.org/W2096541451","https://openalex.org/W2097066538","https://openalex.org/W2099432112","https://openalex.org/W2101368370","https://openalex.org/W2114850508","https://openalex.org/W2123681603","https://openalex.org/W2128307445","https://openalex.org/W2134503191","https://openalex.org/W2146984355","https://openalex.org/W2154670681","https://openalex.org/W2222589778","https://openalex.org/W2330799739","https://openalex.org/W2346710580","https://openalex.org/W2347697584","https://openalex.org/W2396663079","https://openalex.org/W2404459885","https://openalex.org/W2467779447","https://openalex.org/W2601278367","https://openalex.org/W2743816750","https://openalex.org/W2757663759","https://openalex.org/W2772606519","https://openalex.org/W2784270883","https://openalex.org/W2809247499","https://openalex.org/W2884277910","https://openalex.org/W2904240839","https://openalex.org/W2906137465","https://openalex.org/W2917351232","https://openalex.org/W2979538819","https://openalex.org/W4211038485","https://openalex.org/W4243496626"],"related_works":["https://openalex.org/W4255463199","https://openalex.org/W4281691423","https://openalex.org/W2411039299","https://openalex.org/W1856410221","https://openalex.org/W2318949977","https://openalex.org/W2334139353","https://openalex.org/W1999723721","https://openalex.org/W2023364124","https://openalex.org/W2069687261","https://openalex.org/W2248951706"],"abstract_inverted_index":{"The":[0],"early":[1],"stages":[2],"of":[3,34,82,100,114,117,125,185],"drug":[4,79],"discovery":[5],"rely":[6],"on":[7,128],"hit-to-lead":[8,78],"programs,":[9],"where":[10,109,170],"initial":[11],"hits":[12],"undergo":[13],"partial":[14],"optimization":[15],"to":[16,52,59,102,142,177],"improve":[17],"binding":[18,166],"affinities":[19],"for":[20,42,75,160],"their":[21],"biological":[22],"target.":[23],"This":[24],"is":[25],"an":[26,39],"expensive":[27],"and":[28,36,56,130,145,148,164,187],"time-consuming":[29],"process,":[30],"requiring":[31],"multiple":[32],"iterations":[33],"trial":[35],"error":[37],"designs,":[38],"ideal":[40],"scenario":[41],"applying":[43],"computer":[44],"simulation.":[45],"However,":[46],"most":[47],"state-of-the-art":[48],"modeling":[49],"techniques":[50],"fail":[51],"provide":[53],"a":[54,72,84,87,182],"fast":[55],"reliable":[57],"answer":[58],"the":[60,92,98,115,123,126,136],"Induced-Fit":[61,146],"protein-ligand":[62,93],"problem.":[63],"To":[64],"aid":[65],"in":[66,76,107,168,181],"this":[67],"matter,":[68],"we":[69,121],"present":[70],"FragPELE,":[71],"new":[73,162],"tool":[74],"silico":[77],"design,":[80],"capable":[81],"growing":[83,129],"fragment":[85],"from":[86,135],"bound":[88],"core":[89],"while":[90],"exploring":[91],"conformational":[94],"space.":[95],"We":[96],"tested":[97],"ability":[99],"FragPELE":[101,154],"predict":[103],"crystallographic":[104],"data,":[105],"even":[106],"cases":[108,169],"cryptic":[110],"sub-pockets":[111],"open":[112],"because":[113],"presence":[116],"particular":[118],"R-groups.":[119],"Additionally,":[120],"evaluated":[122],"potential":[124],"software":[127],"scoring":[131],"five":[132],"congeneric":[133],"series":[134],"2015":[137],"FEP+":[138],"dataset,":[139],"comparing":[140],"them":[141],"FEP+,":[143],"SP":[144],"Glide,":[147],"MMGBSA":[149],"simulations.":[150],"Results":[151],"show":[152],"that":[153],"could":[155],"be":[156],"useful":[157],"not":[158],"only":[159],"finding":[161],"cavities":[163],"novel":[165],"modes":[167],"standard":[171],"docking":[172],"tools":[173],"cannot":[174],"but":[175],"also":[176],"rank":[178],"ligand":[179],"activities":[180],"reasonable":[183],"amount":[184],"time":[186],"with":[188],"acceptable":[189],"precision.":[190]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":2}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
