{"id":"https://openalex.org/W2992311071","doi":"https://doi.org/10.1021/acs.jcim.9b00744","title":"New Features of Carbohydrate Structure Database Notation (CSDB Linear), As Compared to Other Carbohydrate Notations","display_name":"New Features of Carbohydrate Structure Database Notation (CSDB Linear), As Compared to Other Carbohydrate Notations","publication_year":2019,"publication_date":"2019-12-02","ids":{"openalex":"https://openalex.org/W2992311071","doi":"https://doi.org/10.1021/acs.jcim.9b00744","mag":"2992311071","pmid":"https://pubmed.ncbi.nlm.nih.gov/31790229"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.9b00744","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.9b00744","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006719128","display_name":"Filip V. Toukach","orcid":"https://orcid.org/0000-0001-9887-8919"},"institutions":[{"id":"https://openalex.org/I118501908","display_name":"National Research University Higher School of Economics","ror":"https://ror.org/055f7t516","country_code":"RU","type":"education","lineage":["https://openalex.org/I118501908"]},{"id":"https://openalex.org/I4210088206","display_name":"N.D. Zelinsky Institute of Organic Chemistry","ror":"https://ror.org/007phxq15","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210088206","https://openalex.org/I4210145551"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Philip V. Toukach","raw_affiliation_strings":["N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky prosect 47, Moscow, Russia 119991","National Research University Higher School of Economics, Myasnitskaya 20, Moscow, Russia 101000"],"raw_orcid":"https://orcid.org/0000-0001-9887-8919","affiliations":[{"raw_affiliation_string":"N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky prosect 47, Moscow, Russia 119991","institution_ids":["https://openalex.org/I4210088206"]},{"raw_affiliation_string":"National Research University Higher School of Economics, Myasnitskaya 20, Moscow, Russia 101000","institution_ids":["https://openalex.org/I118501908"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037536745","display_name":"Ksenia S. Egorova","orcid":"https://orcid.org/0000-0002-1102-2868"},"institutions":[{"id":"https://openalex.org/I4210088206","display_name":"N.D. Zelinsky Institute of Organic Chemistry","ror":"https://ror.org/007phxq15","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210088206","https://openalex.org/I4210145551"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Ksenia S. Egorova","raw_affiliation_strings":["N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky prosect 47, Moscow, Russia 119991"],"raw_orcid":"https://orcid.org/0000-0002-1102-2868","affiliations":[{"raw_affiliation_string":"N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky prosect 47, Moscow, Russia 119991","institution_ids":["https://openalex.org/I4210088206"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5006719128"],"corresponding_institution_ids":["https://openalex.org/I118501908","https://openalex.org/I4210088206"],"apc_list":null,"apc_paid":null,"fwci":0.8589,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.73606638,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"60","issue":"3","first_page":"1276","last_page":"1289"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10835","display_name":"Carbohydrate Chemistry and Synthesis","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/notation","display_name":"Notation","score":0.8147441148757935},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6611043810844421},{"id":"https://openalex.org/keywords/carbohydrate","display_name":"Carbohydrate","score":0.5632725954055786},{"id":"https://openalex.org/keywords/glycan","display_name":"Glycan","score":0.5192646980285645},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.43227845430374146},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.32355374097824097},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2671149671077728},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2573305368423462},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1673823595046997},{"id":"https://openalex.org/keywords/arithmetic","display_name":"Arithmetic","score":0.15174156427383423},{"id":"https://openalex.org/keywords/organic-chemistry","display_name":"Organic chemistry","score":0.09416946768760681},{"id":"https://openalex.org/keywords/glycoprotein","display_name":"Glycoprotein","score":0.06682568788528442}],"concepts":[{"id":"https://openalex.org/C45357846","wikidata":"https://www.wikidata.org/wiki/Q2001982","display_name":"Notation","level":2,"score":0.8147441148757935},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6611043810844421},{"id":"https://openalex.org/C2778977261","wikidata":"https://www.wikidata.org/wiki/Q11358","display_name":"Carbohydrate","level":2,"score":0.5632725954055786},{"id":"https://openalex.org/C206212055","wikidata":"https://www.wikidata.org/wiki/Q2553138","display_name":"Glycan","level":3,"score":0.5192646980285645},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.43227845430374146},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.32355374097824097},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2671149671077728},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2573305368423462},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1673823595046997},{"id":"https://openalex.org/C94375191","wikidata":"https://www.wikidata.org/wiki/Q11205","display_name":"Arithmetic","level":1,"score":0.15174156427383423},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.09416946768760681},{"id":"https://openalex.org/C108625454","wikidata":"https://www.wikidata.org/wiki/Q187126","display_name":"Glycoprotein","level":2,"score":0.06682568788528442},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002240","descriptor_name":"Carbohydrate Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002240","descriptor_name":"Carbohydrate Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002240","descriptor_name":"Carbohydrate Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002241","descriptor_name":"Carbohydrates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002241","descriptor_name":"Carbohydrates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002241","descriptor_name":"Carbohydrates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011134","descriptor_name":"Polysaccharides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011134","descriptor_name":"Polysaccharides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011134","descriptor_name":"Polysaccharides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D048088","descriptor_name":"Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D048088","descriptor_name":"Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D048088","descriptor_name":"Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.9b00744","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.9b00744","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:31790229","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31790229","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8531855164","display_name":null,"funder_award_id":"18-14-00098","funder_id":"https://openalex.org/F4320324099","funder_display_name":"Russian Science Foundation"},{"id":"https://openalex.org/G8790229593","display_name":null,"funder_award_id":"18-04-00094","funder_id":"https://openalex.org/F4320321079","funder_display_name":"Russian Foundation for Basic Research"}],"funders":[{"id":"https://openalex.org/F4320321079","display_name":"Russian Foundation for Basic Research","ror":"https://ror.org/02mh1ke95"},{"id":"https://openalex.org/F4320324099","display_name":"Russian Science Foundation","ror":"https://ror.org/03y2gwe85"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":53,"referenced_works":["https://openalex.org/W1548362700","https://openalex.org/W1719012545","https://openalex.org/W1967053459","https://openalex.org/W1972393591","https://openalex.org/W1975147762","https://openalex.org/W1976484683","https://openalex.org/W1980541971","https://openalex.org/W1983217234","https://openalex.org/W1990147844","https://openalex.org/W1997315604","https://openalex.org/W2014865312","https://openalex.org/W2041610798","https://openalex.org/W2051810242","https://openalex.org/W2066028025","https://openalex.org/W2072737943","https://openalex.org/W2079804839","https://openalex.org/W2083174069","https://openalex.org/W2087563523","https://openalex.org/W2092296317","https://openalex.org/W2094937489","https://openalex.org/W2096512472","https://openalex.org/W2098943363","https://openalex.org/W2102281287","https://openalex.org/W2102396102","https://openalex.org/W2117672117","https://openalex.org/W2121076445","https://openalex.org/W2125674325","https://openalex.org/W2132033936","https://openalex.org/W2140238070","https://openalex.org/W2157164196","https://openalex.org/W2163577472","https://openalex.org/W2177317049","https://openalex.org/W2190199302","https://openalex.org/W2312972213","https://openalex.org/W2313985632","https://openalex.org/W2401254175","https://openalex.org/W2408627837","https://openalex.org/W2417623909","https://openalex.org/W2436562373","https://openalex.org/W2473554477","https://openalex.org/W2533037805","https://openalex.org/W2560504497","https://openalex.org/W2560661346","https://openalex.org/W2591586569","https://openalex.org/W2611907395","https://openalex.org/W2620998958","https://openalex.org/W2743571801","https://openalex.org/W2790040331","https://openalex.org/W2892229044","https://openalex.org/W2896003870","https://openalex.org/W2902893801","https://openalex.org/W2953110573","https://openalex.org/W4246247583"],"related_works":["https://openalex.org/W183875936","https://openalex.org/W2089644524","https://openalex.org/W2504004674","https://openalex.org/W4379977790","https://openalex.org/W4380090585","https://openalex.org/W1531549338","https://openalex.org/W2008437729","https://openalex.org/W1585007664","https://openalex.org/W3187173913","https://openalex.org/W2898214470"],"abstract_inverted_index":{"The":[0,23,59,92],"CSDB":[1,63,76,93],"Linear":[2,94],"notation":[3],"for":[4,47,89,105],"carbohydrate":[5,100],"sequences":[6],"utilized":[7],"in":[8,21,35,75],"the":[9,27,67,79,83],"Carbohydrate":[10],"Structure":[11],"Database":[12],"(CSDB)":[13],"has":[14],"been":[15],"improved":[16],"to":[17,29,98],"meet":[18],"modern":[19],"requirements":[20],"glycoinformatics.":[22],"new":[24,60],"features":[25],"include:":[26],"possibility":[28],"combine":[30],"repeating":[31],"and":[32,42,56,102],"nonrepeating":[33],"moieties":[34],"one":[36],"structure;":[37],"support":[38],"of":[39,44,51,62,73,85],"carbon-carbon":[40],"bonds;":[41],"usage":[43],"SMILES":[45],"encodings":[46],"unambiguous":[48],"chemical":[49],"description":[50],"glycan":[52],"structures,":[53],"including":[54],"aglycons":[55],"atypical":[57],"components.":[58],"capabilities":[61],"Linear,":[64],"together":[65],"with":[66],"older":[68],"ones,":[69],"allow":[70],"efficient":[71],"detection":[72],"errors":[74],"and,":[77],"at":[78],"same":[80],"time,":[81],"ensure":[82],"absence":[84],"informatic":[86],"problems":[87],"common":[88],"human-readable":[90],"notations.":[91],"implementation":[95],"provides":[96],"translation":[97],"other":[99],"notations":[101],"multiple":[103],"procedures":[104],"content":[106],"error":[107],"checking.":[108]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
