{"id":"https://openalex.org/W2989750807","doi":"https://doi.org/10.1021/acs.jcim.9b00672","title":"Assessing Peptide Binding to MHC II: An Accurate Semiempirical Quantum Mechanics Based Proposal","display_name":"Assessing Peptide Binding to MHC II: An Accurate Semiempirical Quantum Mechanics Based Proposal","publication_year":2019,"publication_date":"2019-11-20","ids":{"openalex":"https://openalex.org/W2989750807","doi":"https://doi.org/10.1021/acs.jcim.9b00672","mag":"2989750807","pmid":"https://pubmed.ncbi.nlm.nih.gov/31747514"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.9b00672","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.9b00672","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://repository.urosario.edu.co/handle/10336/22284","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060556181","display_name":"Carlos A. Ortiz-Mahecha","orcid":null},"institutions":[{"id":"https://openalex.org/I4210108383","display_name":"Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia","ror":"https://ror.org/01j543957","country_code":"CO","type":"nonprofit","lineage":["https://openalex.org/I4210108383"]}],"countries":["CO"],"is_corresponding":false,"raw_author_name":"Carlos A. Ortiz-Mahecha","raw_affiliation_strings":["Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia (FIDIC), Bogot\u00e1 D.C., Colombia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia (FIDIC), Bogot\u00e1 D.C., Colombia","institution_ids":["https://openalex.org/I4210108383"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062469615","display_name":"Hugo J. Boh\u00f3rquez","orcid":"https://orcid.org/0000-0001-6130-4233"},"institutions":[{"id":"https://openalex.org/I3132500588","display_name":"University of Applied and Environmental Sciences","ror":"https://ror.org/01h2taq97","country_code":"CO","type":"education","lineage":["https://openalex.org/I3132500588"]},{"id":"https://openalex.org/I4210108383","display_name":"Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia","ror":"https://ror.org/01j543957","country_code":"CO","type":"nonprofit","lineage":["https://openalex.org/I4210108383"]}],"countries":["CO"],"is_corresponding":false,"raw_author_name":"Hugo J. Boh\u00f3rquez","raw_affiliation_strings":["Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia (FIDIC), Bogot\u00e1 D.C., Colombia","Universidad de Ciencias Aplicadas y Ambientales (UDCA), Bogot\u00e1 D.C., Colombia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia (FIDIC), Bogot\u00e1 D.C., Colombia","institution_ids":["https://openalex.org/I4210108383"]},{"raw_affiliation_string":"Universidad de Ciencias Aplicadas y Ambientales (UDCA), Bogot\u00e1 D.C., Colombia","institution_ids":["https://openalex.org/I3132500588"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108811772","display_name":"William A. Agudelo","orcid":null},"institutions":[{"id":"https://openalex.org/I4210108383","display_name":"Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia","ror":"https://ror.org/01j543957","country_code":"CO","type":"nonprofit","lineage":["https://openalex.org/I4210108383"]}],"countries":["CO"],"is_corresponding":false,"raw_author_name":"William A. Agudelo","raw_affiliation_strings":["Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia (FIDIC), Bogot\u00e1 D.C., Colombia"],"raw_orcid":"https://orcid.org/0000-0002-4526-6705","affiliations":[{"raw_affiliation_string":"Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia (FIDIC), Bogot\u00e1 D.C., Colombia","institution_ids":["https://openalex.org/I4210108383"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114375721","display_name":"Manuel A. Patarroyo","orcid":"https://orcid.org/0000-0002-4751-2500"},"institutions":[{"id":"https://openalex.org/I36243813","display_name":"Universidad Nacional de Colombia","ror":"https://ror.org/059yx9a68","country_code":"CO","type":"education","lineage":["https://openalex.org/I36243813"]},{"id":"https://openalex.org/I4210108383","display_name":"Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia","ror":"https://ror.org/01j543957","country_code":"CO","type":"nonprofit","lineage":["https://openalex.org/I4210108383"]},{"id":"https://openalex.org/I90803817","display_name":"Universidad del Rosario","ror":"https://ror.org/0108mwc04","country_code":"CO","type":"education","lineage":["https://openalex.org/I90803817"]}],"countries":["CO"],"is_corresponding":false,"raw_author_name":"Manuel A. Patarroyo","raw_affiliation_strings":["Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia (FIDIC), Bogot\u00e1 D.C., Colombia","School of Medicine and Health Sciences, Universidad del Rosario, Bogot\u00e1 D.C., Colombia","Universidad Nacional de Colombia, Bogot\u00e1 D.C., Colombia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia (FIDIC), Bogot\u00e1 D.C., Colombia","institution_ids":["https://openalex.org/I4210108383"]},{"raw_affiliation_string":"School of Medicine and Health Sciences, Universidad del Rosario, Bogot\u00e1 D.C., Colombia","institution_ids":["https://openalex.org/I90803817"]},{"raw_affiliation_string":"Universidad Nacional de Colombia, Bogot\u00e1 D.C., Colombia","institution_ids":["https://openalex.org/I36243813"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042652382","display_name":"Manuel E. Patarroyo","orcid":"https://orcid.org/0000-0002-1119-6040"},"institutions":[{"id":"https://openalex.org/I36243813","display_name":"Universidad Nacional de Colombia","ror":"https://ror.org/059yx9a68","country_code":"CO","type":"education","lineage":["https://openalex.org/I36243813"]},{"id":"https://openalex.org/I4210108383","display_name":"Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia","ror":"https://ror.org/01j543957","country_code":"CO","type":"nonprofit","lineage":["https://openalex.org/I4210108383"]},{"id":"https://openalex.org/I90803817","display_name":"Universidad del Rosario","ror":"https://ror.org/0108mwc04","country_code":"CO","type":"education","lineage":["https://openalex.org/I90803817"]}],"countries":["CO"],"is_corresponding":false,"raw_author_name":"Manuel E. Patarroyo","raw_affiliation_strings":["Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia (FIDIC), Bogot\u00e1 D.C., Colombia","School of Medicine and Health Sciences, Universidad del Rosario, Bogot\u00e1 D.C., Colombia","Universidad Nacional de Colombia, Bogot\u00e1 D.C., Colombia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia (FIDIC), Bogot\u00e1 D.C., Colombia","institution_ids":["https://openalex.org/I4210108383"]},{"raw_affiliation_string":"School of Medicine and Health Sciences, Universidad del Rosario, Bogot\u00e1 D.C., Colombia","institution_ids":["https://openalex.org/I90803817"]},{"raw_affiliation_string":"Universidad Nacional de Colombia, Bogot\u00e1 D.C., Colombia","institution_ids":["https://openalex.org/I36243813"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056895607","display_name":"Carlos F. Su\u00e1rez","orcid":"https://orcid.org/0000-0001-8423-408X"},"institutions":[{"id":"https://openalex.org/I4210108383","display_name":"Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia","ror":"https://ror.org/01j543957","country_code":"CO","type":"nonprofit","lineage":["https://openalex.org/I4210108383"]},{"id":"https://openalex.org/I90803817","display_name":"Universidad del Rosario","ror":"https://ror.org/0108mwc04","country_code":"CO","type":"education","lineage":["https://openalex.org/I90803817"]}],"countries":["CO"],"is_corresponding":true,"raw_author_name":"Carlos F. Su\u00e1rez","raw_affiliation_strings":["Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia (FIDIC), Bogot\u00e1 D.C., Colombia","School of Medicine and Health Sciences, Universidad del Rosario, Bogot\u00e1 D.C., Colombia"],"raw_orcid":"https://orcid.org/0000-0001-8423-408X","affiliations":[{"raw_affiliation_string":"Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia (FIDIC), Bogot\u00e1 D.C., Colombia","institution_ids":["https://openalex.org/I4210108383"]},{"raw_affiliation_string":"School of Medicine and Health Sciences, Universidad del Rosario, Bogot\u00e1 D.C., Colombia","institution_ids":["https://openalex.org/I90803817"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5056895607"],"corresponding_institution_ids":["https://openalex.org/I4210108383","https://openalex.org/I90803817"],"apc_list":null,"apc_paid":null,"fwci":1.0782,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.75442616,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"59","issue":"12","first_page":"5148","last_page":"5160"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/major-histocompatibility-complex","display_name":"Major histocompatibility complex","score":0.6678645610809326},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.5679794549942017},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5060393214225769},{"id":"https://openalex.org/keywords/human-leukocyte-antigen","display_name":"Human leukocyte antigen","score":0.4847114086151123},{"id":"https://openalex.org/keywords/quantum","display_name":"Quantum","score":0.47532039880752563},{"id":"https://openalex.org/keywords/binding-energy","display_name":"Binding energy","score":0.4589690864086151},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.4393766224384308},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.4170289635658264},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.37909460067749023},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.37103894352912903},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3607214689254761},{"id":"https://openalex.org/keywords/chemical-physics","display_name":"Chemical physics","score":0.35836514830589294},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3394875228404999},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.3349430561065674},{"id":"https://openalex.org/keywords/quantum-mechanics","display_name":"Quantum mechanics","score":0.2217898964881897},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14228284358978271},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09326714277267456},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.0848742127418518}],"concepts":[{"id":"https://openalex.org/C207936829","wikidata":"https://www.wikidata.org/wiki/Q423163","display_name":"Major histocompatibility complex","level":3,"score":0.6678645610809326},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.5679794549942017},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5060393214225769},{"id":"https://openalex.org/C188280979","wikidata":"https://www.wikidata.org/wiki/Q911125","display_name":"Human leukocyte antigen","level":3,"score":0.4847114086151123},{"id":"https://openalex.org/C84114770","wikidata":"https://www.wikidata.org/wiki/Q46344","display_name":"Quantum","level":2,"score":0.47532039880752563},{"id":"https://openalex.org/C93282013","wikidata":"https://www.wikidata.org/wiki/Q420754","display_name":"Binding energy","level":2,"score":0.4589690864086151},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.4393766224384308},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.4170289635658264},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.37909460067749023},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.37103894352912903},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3607214689254761},{"id":"https://openalex.org/C159467904","wikidata":"https://www.wikidata.org/wiki/Q2001702","display_name":"Chemical physics","level":1,"score":0.35836514830589294},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3394875228404999},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.3349430561065674},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.2217898964881897},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14228284358978271},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09326714277267456},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0848742127418518},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.0},{"id":"https://openalex.org/C46141821","wikidata":"https://www.wikidata.org/wiki/Q209402","display_name":"Nuclear magnetic resonance","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000949","descriptor_name":"Histocompatibility Antigens Class II","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000949","descriptor_name":"Histocompatibility Antigens Class II","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000949","descriptor_name":"Histocompatibility Antigens Class II","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000949","descriptor_name":"Histocompatibility Antigens Class II","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000949","descriptor_name":"Histocompatibility Antigens Class II","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000949","descriptor_name":"Histocompatibility Antigens Class II","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011789","descriptor_name":"Quantum Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011789","descriptor_name":"Quantum Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011789","descriptor_name":"Quantum Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1021/acs.jcim.9b00672","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.9b00672","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:31747514","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31747514","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:repository.urosario.edu.co:10336/22284","is_oa":true,"landing_page_url":"https://repository.urosario.edu.co/handle/10336/22284","pdf_url":null,"source":{"id":"https://openalex.org/S4306401708","display_name":"Repositorio Institucional E-DocUR (Universidad Del Rosario)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I90803817","host_organization_name":"Universidad del Rosario","host_organization_lineage":["https://openalex.org/I90803817"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:Repositorio EdocUR - U. Rosario","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:repository.udca.edu.co:11158/3241","is_oa":false,"landing_page_url":"https://www.scopus.com/search/form.uri?display=basic","pdf_url":null,"source":{"id":"https://openalex.org/S7407055416","display_name":"Repositorio - Universidad de Ciencias Aplicadas y Ambientales UDCA.","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://www.scopus.com/search/form.uri?display=basic","raw_type":"http://purl.org/redcol/resource_type/ART"}],"best_oa_location":{"id":"pmh:oai:repository.urosario.edu.co:10336/22284","is_oa":true,"landing_page_url":"https://repository.urosario.edu.co/handle/10336/22284","pdf_url":null,"source":{"id":"https://openalex.org/S4306401708","display_name":"Repositorio Institucional E-DocUR (Universidad Del Rosario)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I90803817","host_organization_name":"Universidad del Rosario","host_organization_lineage":["https://openalex.org/I90803817"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:Repositorio EdocUR - U. Rosario","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[{"display_name":"Affordable and clean energy","score":0.7099999785423279,"id":"https://metadata.un.org/sdg/7"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":79,"referenced_works":["https://openalex.org/W967484727","https://openalex.org/W1850503613","https://openalex.org/W1943788890","https://openalex.org/W1963516132","https://openalex.org/W1966123722","https://openalex.org/W1967751997","https://openalex.org/W1968395922","https://openalex.org/W1987275960","https://openalex.org/W1990752587","https://openalex.org/W1992426410","https://openalex.org/W1997151511","https://openalex.org/W2000486917","https://openalex.org/W2003141177","https://openalex.org/W2008558900","https://openalex.org/W2011805684","https://openalex.org/W2014735815","https://openalex.org/W2014996031","https://openalex.org/W2018620812","https://openalex.org/W2022950330","https://openalex.org/W2024294539","https://openalex.org/W2025178360","https://openalex.org/W2029667189","https://openalex.org/W2045868870","https://openalex.org/W2050566020","https://openalex.org/W2055563809","https://openalex.org/W2056213804","https://openalex.org/W2062169290","https://openalex.org/W2064356188","https://openalex.org/W2067484324","https://openalex.org/W2073175998","https://openalex.org/W2074222872","https://openalex.org/W2080199661","https://openalex.org/W2080956086","https://openalex.org/W2088162897","https://openalex.org/W2088970363","https://openalex.org/W2089608446","https://openalex.org/W2091530366","https://openalex.org/W2093235037","https://openalex.org/W2095148640","https://openalex.org/W2102938736","https://openalex.org/W2105638686","https://openalex.org/W2107536155","https://openalex.org/W2109018577","https://openalex.org/W2115562155","https://openalex.org/W2119761838","https://openalex.org/W2120715487","https://openalex.org/W2123924869","https://openalex.org/W2130783116","https://openalex.org/W2132629607","https://openalex.org/W2138866442","https://openalex.org/W2152830055","https://openalex.org/W2154714625","https://openalex.org/W2157038428","https://openalex.org/W2160704994","https://openalex.org/W2221713243","https://openalex.org/W2289855849","https://openalex.org/W2323159942","https://openalex.org/W2327581403","https://openalex.org/W2331039348","https://openalex.org/W2335804930","https://openalex.org/W2337403656","https://openalex.org/W2395521783","https://openalex.org/W2419422952","https://openalex.org/W2428593791","https://openalex.org/W2514929667","https://openalex.org/W2560617093","https://openalex.org/W2562202281","https://openalex.org/W2564199680","https://openalex.org/W2583187043","https://openalex.org/W2597129987","https://openalex.org/W2687583174","https://openalex.org/W2743344402","https://openalex.org/W2769925250","https://openalex.org/W2774896852","https://openalex.org/W2783102765","https://openalex.org/W2898389621","https://openalex.org/W2900127803","https://openalex.org/W2909834406","https://openalex.org/W2958049151"],"related_works":["https://openalex.org/W2391467650","https://openalex.org/W1526195401","https://openalex.org/W4313385292","https://openalex.org/W1759461029","https://openalex.org/W3134906029","https://openalex.org/W1996781584","https://openalex.org/W2071773780","https://openalex.org/W2126989399","https://openalex.org/W2381567441","https://openalex.org/W3111171798"],"abstract_inverted_index":{"Estimating":[0],"peptide\u2013major":[1],"histocompatibility":[2],"complex":[3],"(pMHC)":[4],"binding":[5,43,123],"using":[6,92],"structural":[7,73],"computational":[8],"methods":[9,96],"has":[10],"an":[11],"impact":[12],"on":[13],"understanding":[14],"overall":[15],"immune":[16,20],"function":[17],"triggering":[18],"adaptive":[19],"responses":[21],"in":[22,110,121,138],"MHC":[23],"class":[24],"II":[25],"molecules.":[26],"We":[27],"developed":[28],"a":[29,68,83,149],"strategy":[30],"for":[31,40,86,152],"optimizing":[32],"pMHC":[33,154],"structure":[34],"interacting":[35],"with":[36,102,128],"water":[37],"molecules":[38],"and":[39,61,99,107,112,131],"calculating":[41,122],"the":[42,103],"energy":[44,90],"of":[45],"receptor":[46],"+":[47,53,56,59,63],"ligand":[48],"systems,":[49],"such":[50],"as":[51,65,67,148],"HLA-DR1":[52,55],"HA,":[54],"CLIP,":[57,64],"HLA-DR2":[58],"MBP,":[60],"HLA-DR3":[62],"well":[66],"monosubstitution":[69],"panel.":[70],"Taking":[71],"pMHC\u2019s":[72],"properties,":[74],"we":[75,116],"assumed":[76],"that":[77],"\u0394H":[78],"\u226b":[79],"\u2212T\u0394S":[80],"would":[81],"generate":[82],"linear":[84],"model":[85],"estimating":[87],"relative":[88],"free":[89],"change,":[91],"three":[93],"semiempirical":[94],"quantum":[95],"(PM6,":[97],"PM7,":[98],"FMO-SCC-DFTB3)":[100],"along":[101],"implicit":[104],"solvent":[105],"models,":[106],"considering":[108],"proteins":[109],"neutral":[111],"charged":[113],"states.":[114],"Likewise,":[115],"confirmed":[117],"our":[118,140],"approach\u2019s":[119],"effectiveness":[120],"energies":[124],"having":[125],"high":[126],"correlation":[127],"experimental":[129],"data":[130],"low":[132],"root-mean-square":[133],"error":[134],"(<2":[135],"kcal/mol).":[136],"All":[137],"all,":[139],"pipeline":[141],"differentiates":[142],"weak":[143],"from":[144],"strong":[145],"peptide":[146],"binders":[147],"reliable":[150],"method":[151],"studying":[153],"interactions.":[155]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3}],"updated_date":"2026-05-16T08:24:45.110214","created_date":"2025-10-10T00:00:00"}
