{"id":"https://openalex.org/W2991877021","doi":"https://doi.org/10.1021/acs.jcim.9b00438","title":"To Improve Protein Sequence Profile Prediction through Image Captioning on Pairwise Residue Distance Map","display_name":"To Improve Protein Sequence Profile Prediction through Image Captioning on Pairwise Residue Distance Map","publication_year":2019,"publication_date":"2019-12-04","ids":{"openalex":"https://openalex.org/W2991877021","doi":"https://doi.org/10.1021/acs.jcim.9b00438","mag":"2991877021","pmid":"https://pubmed.ncbi.nlm.nih.gov/31800243"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.9b00438","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.9b00438","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002074153","display_name":"Sheng Chen","orcid":"https://orcid.org/0000-0003-1428-6778"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Sheng Chen","raw_affiliation_strings":["School of Data and Computer Science, Sun Yat-sen University, Guangzhou 510000, China"],"raw_orcid":"https://orcid.org/0000-0003-1428-6778","affiliations":[{"raw_affiliation_string":"School of Data and Computer Science, Sun Yat-sen University, Guangzhou 510000, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101736882","display_name":"Zhe Sun","orcid":"https://orcid.org/0000-0002-0847-8442"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhe Sun","raw_affiliation_strings":["School of Data and Computer Science, Sun Yat-sen University, Guangzhou 510000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Data and Computer Science, Sun Yat-sen University, Guangzhou 510000, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056621647","display_name":"Lihua Lin","orcid":"https://orcid.org/0000-0002-4268-1815"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lihua Lin","raw_affiliation_strings":["School of Data and Computer Science, Sun Yat-sen University, Guangzhou 510000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Data and Computer Science, Sun Yat-sen University, Guangzhou 510000, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103139071","display_name":"Zifeng Liu","orcid":"https://orcid.org/0000-0002-1392-8698"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I4210146956","display_name":"Third Affiliated Hospital of Sun Yat-sen University","ror":"https://ror.org/04tm3k558","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210146956"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zifeng Liu","raw_affiliation_strings":["Third Affiliated Hospital of Sun Yat-sen University, Guangzhou 510000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Third Affiliated Hospital of Sun Yat-sen University, Guangzhou 510000, China","institution_ids":["https://openalex.org/I4210146956","https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101666166","display_name":"Xun Liu","orcid":"https://orcid.org/0000-0002-2360-1429"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I4210146956","display_name":"Third Affiliated Hospital of Sun Yat-sen University","ror":"https://ror.org/04tm3k558","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210146956"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xun Liu","raw_affiliation_strings":["Third Affiliated Hospital of Sun Yat-sen University, Guangzhou 510000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Third Affiliated Hospital of Sun Yat-sen University, Guangzhou 510000, China","institution_ids":["https://openalex.org/I4210146956","https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008182583","display_name":"Yutian Chong","orcid":"https://orcid.org/0000-0001-8215-4393"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I4210146956","display_name":"Third Affiliated Hospital of Sun Yat-sen University","ror":"https://ror.org/04tm3k558","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210146956"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yutian Chong","raw_affiliation_strings":["Third Affiliated Hospital of Sun Yat-sen University, Guangzhou 510000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Third Affiliated Hospital of Sun Yat-sen University, Guangzhou 510000, China","institution_ids":["https://openalex.org/I4210146956","https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101633465","display_name":"Yutong Lu","orcid":"https://orcid.org/0000-0001-5315-3375"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yutong Lu","raw_affiliation_strings":["School of Data and Computer Science, Sun Yat-sen University, Guangzhou 510000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Data and Computer Science, Sun Yat-sen University, Guangzhou 510000, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076568855","display_name":"Huiying Zhao","orcid":"https://orcid.org/0000-0001-9429-3016"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I4210097354","display_name":"Sun Yat-sen Memorial Hospital","ror":"https://ror.org/01px77p81","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210097354"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Huiying Zhao","raw_affiliation_strings":["Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou 510000, China"],"raw_orcid":"https://orcid.org/0000-0001-9429-3016","affiliations":[{"raw_affiliation_string":"Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou 510000, China","institution_ids":["https://openalex.org/I4210097354","https://openalex.org/I157773358"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023539493","display_name":"Yuedong Yang","orcid":"https://orcid.org/0000-0002-6782-2813"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yuedong Yang","raw_affiliation_strings":["Key Laboratory of Machine Intelligence and Advanced Computing (Sun Yat-sen University) of the Ministry of Education, Guangzhou 510000, China","School of Data and Computer Science, Sun Yat-sen University, Guangzhou 510000, China"],"raw_orcid":"https://orcid.org/0000-0002-6782-2813","affiliations":[{"raw_affiliation_string":"Key Laboratory of Machine Intelligence and Advanced Computing (Sun Yat-sen University) of the Ministry of Education, Guangzhou 510000, China","institution_ids":["https://openalex.org/I157773358"]},{"raw_affiliation_string":"School of Data and Computer Science, Sun Yat-sen University, Guangzhou 510000, China","institution_ids":["https://openalex.org/I157773358"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5023539493","https://openalex.org/A5076568855"],"corresponding_institution_ids":["https://openalex.org/I157773358","https://openalex.org/I4210097354"],"apc_list":null,"apc_paid":null,"fwci":2.4909,"has_fulltext":false,"cited_by_count":51,"citation_normalized_percentile":{"value":0.90263517,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"60","issue":"1","first_page":"391","last_page":"399"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.973800003528595,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.7598298192024231},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6798117160797119},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5887778401374817},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5838661789894104},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5433692336082458},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4626387655735016},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4383174479007721},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4365634024143219},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1503288447856903},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07696345448493958}],"concepts":[{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.7598298192024231},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6798117160797119},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5887778401374817},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5838661789894104},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5433692336082458},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4626387655735016},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4383174479007721},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4365634024143219},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1503288447856903},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07696345448493958},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1021/acs.jcim.9b00438","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.9b00438","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:31800243","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31800243","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:research-repository.griffith.edu.au:10072/393278","is_oa":false,"landing_page_url":"http://hdl.handle.net/10072/393278","pdf_url":null,"source":{"id":"https://openalex.org/S4306402548","display_name":"Griffith Research Online (Griffith University, Queensland, Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11701301","host_organization_name":"Griffith University","host_organization_lineage":["https://openalex.org/I11701301"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Affordable and clean energy","score":0.7300000190734863,"id":"https://metadata.un.org/sdg/7"}],"awards":[{"id":"https://openalex.org/G1619931070","display_name":null,"funder_award_id":"U1611261","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4014747619","display_name":null,"funder_award_id":"2018ZX10301402","funder_id":"https://openalex.org/F4320321540","funder_display_name":"Ministry of Science and Technology of the People's Republic of China"},{"id":"https://openalex.org/G4285831925","display_name":null,"funder_award_id":"81801132","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5108781970","display_name":null,"funder_award_id":"61772566","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321540","display_name":"Ministry of Science and Technology of the People's Republic of China","ror":"https://ror.org/027s68j25"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":54,"referenced_works":["https://openalex.org/W179875071","https://openalex.org/W1031578623","https://openalex.org/W1895577753","https://openalex.org/W1954297438","https://openalex.org/W1969067576","https://openalex.org/W1978113501","https://openalex.org/W1980120676","https://openalex.org/W2000036186","https://openalex.org/W2018661561","https://openalex.org/W2025146643","https://openalex.org/W2026461419","https://openalex.org/W2049882295","https://openalex.org/W2064675550","https://openalex.org/W2067598960","https://openalex.org/W2078362683","https://openalex.org/W2079735306","https://openalex.org/W2085497102","https://openalex.org/W2089710023","https://openalex.org/W2093769098","https://openalex.org/W2095705004","https://openalex.org/W2106775540","https://openalex.org/W2110270259","https://openalex.org/W2131447885","https://openalex.org/W2131851312","https://openalex.org/W2131917568","https://openalex.org/W2134759124","https://openalex.org/W2143210482","https://openalex.org/W2144357990","https://openalex.org/W2164130591","https://openalex.org/W2194775991","https://openalex.org/W2336829316","https://openalex.org/W2468616136","https://openalex.org/W2566370974","https://openalex.org/W2567812636","https://openalex.org/W2574496196","https://openalex.org/W2583907533","https://openalex.org/W2607268717","https://openalex.org/W2617750324","https://openalex.org/W2757108520","https://openalex.org/W2778001245","https://openalex.org/W2784883284","https://openalex.org/W2785273668","https://openalex.org/W2790952361","https://openalex.org/W2808950571","https://openalex.org/W2809879025","https://openalex.org/W2908391177","https://openalex.org/W2923747700","https://openalex.org/W2949867299","https://openalex.org/W2954253694","https://openalex.org/W3099395032","https://openalex.org/W3102502733","https://openalex.org/W3104705366","https://openalex.org/W3105389349","https://openalex.org/W4236358448"],"related_works":["https://openalex.org/W2487162673","https://openalex.org/W2793211469","https://openalex.org/W2949152769","https://openalex.org/W4372354731","https://openalex.org/W2942366970","https://openalex.org/W2807634898","https://openalex.org/W1692008701","https://openalex.org/W2132971779","https://openalex.org/W2152844235","https://openalex.org/W2376454312"],"abstract_inverted_index":{"Protein":[0,17],"sequence":[1,18,43,88,120,139],"profile":[2,19],"prediction":[3],"aims":[4],"to":[5,12,60,85,106,178],"generate":[6],"multiple":[7],"sequences":[8],"from":[9,162],"structural":[10,54,151],"information":[11,161],"advance":[13],"the":[14,103,125,138,143,163,202],"protein":[15,87,114,191,195],"design.":[16],"can":[20,157],"be":[21,179],"computationally":[22],"predicted":[23],"by":[24,72],"energy-based":[25],"or":[26],"fragment-based":[27],"methods.":[28],"By":[29],"integrating":[30],"these":[31],"methods":[32],"with":[33,142],"neural":[34],"networks,":[35],"our":[36,98,155],"previous":[37],"method,":[38],"SPIN2,":[39],"has":[40],"achieved":[41,117],"a":[42,81,108,130,172],"recovery":[44,121,140],"rate":[45],"of":[46,75,122,145],"34%.":[47],"However,":[48],"SPIN2":[49],"employed":[50],"only":[51],"one-dimensional":[52],"(1D)":[53],"properties":[55],"that":[56,154],"are":[57],"not":[58],"sufficient":[59],"represent":[61],"three-dimensional":[62],"(3D)":[63],"structures.":[64],"In":[65],"this":[66,101],"study,":[67],"we":[68],"represented":[69],"3D":[70,150,183],"structures":[71],"2D":[73,109,164,173],"maps":[74],"pairwise":[76],"residue":[77],"distances":[78],"and":[79,194,201,209],"developed":[80],"new":[82],"method":[83,105,156],"(SPROF)":[84],"predict":[86],"profiles":[89],"based":[90],"on":[91,124],"an":[92],"image":[93],"captioning":[94],"learning":[95],"frame.":[96],"To":[97],"best":[99],"knowledge,":[100],"is":[102,176,205],"first":[104],"employ":[107],"distance":[110,165,174],"map":[111,175],"for":[112,181],"predicting":[113],"properties.":[115],"SPROF":[116],"39.8%":[118],"in":[119,149],"residues":[123,148],"independent":[126],"test":[127],"set,":[128],"representing":[129],"5.2%":[131],"improvement":[132],"over":[133],"SPIN2.":[134],"We":[135],"also":[136],"found":[137],"increased":[141],"number":[144],"their":[146],"neighbored":[147],"space,":[152],"indicating":[153],"effectively":[158],"learn":[159],"long-range":[160],"map.":[166],"Thus,":[167],"such":[168,186],"network":[169],"architecture":[170],"using":[171],"expected":[177],"useful":[180],"other":[182],"structure-based":[184],"applications,":[185],"as":[187],"binding":[188],"site":[189],"prediction,":[190,193],"function":[192],"interaction":[196],"prediction.":[197],"The":[198],"online":[199],"server":[200],"source":[203],"code":[204],"available":[206],"at":[207],"http://biomed.nscc-gz.cn":[208],"https://github.com/biomed-AI/SPROF":[210],",":[211],"respectively.":[212]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":6}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
