{"id":"https://openalex.org/W2969457089","doi":"https://doi.org/10.1021/acs.jcim.9b00410","title":"Molecule Property Prediction Based on Spatial Graph Embedding","display_name":"Molecule Property Prediction Based on Spatial Graph Embedding","publication_year":2019,"publication_date":"2019-08-22","ids":{"openalex":"https://openalex.org/W2969457089","doi":"https://doi.org/10.1021/acs.jcim.9b00410","mag":"2969457089","pmid":"https://pubmed.ncbi.nlm.nih.gov/31438677"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.9b00410","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.9b00410","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100333213","display_name":"Xiaofeng Wang","orcid":"https://orcid.org/0000-0003-3918-3468"},"institutions":[{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaofeng Wang","raw_affiliation_strings":["College of Information Science and Engineering, Ocean University of China, Qingdao 266100, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Science and Engineering, Ocean University of China, Qingdao 266100, China","institution_ids":["https://openalex.org/I59028903"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100680995","display_name":"Zhen Li","orcid":"https://orcid.org/0000-0001-5093-4221"},"institutions":[{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhen Li","raw_affiliation_strings":["College of Information Science and Engineering, Ocean University of China, Qingdao 266100, China"],"raw_orcid":"https://orcid.org/0000-0001-5093-4221","affiliations":[{"raw_affiliation_string":"College of Information Science and Engineering, Ocean University of China, Qingdao 266100, China","institution_ids":["https://openalex.org/I59028903"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076937227","display_name":"Mingjian Jiang","orcid":"https://orcid.org/0000-0002-0716-5292"},"institutions":[{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mingjian Jiang","raw_affiliation_strings":["College of Information Science and Engineering, Ocean University of China, Qingdao 266100, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Science and Engineering, Ocean University of China, Qingdao 266100, China","institution_ids":["https://openalex.org/I59028903"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100375587","display_name":"Shuang Wang","orcid":"https://orcid.org/0000-0002-6779-9537"},"institutions":[{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuang Wang","raw_affiliation_strings":["College of Information Science and Engineering, Ocean University of China, Qingdao 266100, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Science and Engineering, Ocean University of China, Qingdao 266100, China","institution_ids":["https://openalex.org/I59028903"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101822148","display_name":"Shugang Zhang","orcid":"https://orcid.org/0000-0002-9774-9709"},"institutions":[{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shugang Zhang","raw_affiliation_strings":["College of Information Science and Engineering, Ocean University of China, Qingdao 266100, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Science and Engineering, Ocean University of China, Qingdao 266100, China","institution_ids":["https://openalex.org/I59028903"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079932099","display_name":"Zhiqiang Wei","orcid":"https://orcid.org/0000-0002-2830-8301"},"institutions":[{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiqiang Wei","raw_affiliation_strings":["College of Information Science and Engineering, Ocean University of China, Qingdao 266100, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Science and Engineering, Ocean University of China, Qingdao 266100, China","institution_ids":["https://openalex.org/I59028903"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100680995"],"corresponding_institution_ids":["https://openalex.org/I59028903"],"apc_list":null,"apc_paid":null,"fwci":13.5439,"has_fulltext":false,"cited_by_count":124,"citation_normalized_percentile":{"value":0.99118975,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"59","issue":"9","first_page":"3817","last_page":"3828"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9661999940872192,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.709260880947113},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6558159589767456},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.6417747735977173},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5740536451339722},{"id":"https://openalex.org/keywords/molecular-graph","display_name":"Molecular graph","score":0.4867115318775177},{"id":"https://openalex.org/keywords/convolution","display_name":"Convolution (computer science)","score":0.4703281819820404},{"id":"https://openalex.org/keywords/spatial-analysis","display_name":"Spatial analysis","score":0.4638735055923462},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.446493536233902},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.382942259311676},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3827534317970276},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3777146339416504},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3525330424308777},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.3147786855697632},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22244417667388916},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.08816957473754883}],"concepts":[{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.709260880947113},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6558159589767456},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.6417747735977173},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5740536451339722},{"id":"https://openalex.org/C2780022179","wikidata":"https://www.wikidata.org/wiki/Q1986794","display_name":"Molecular graph","level":3,"score":0.4867115318775177},{"id":"https://openalex.org/C45347329","wikidata":"https://www.wikidata.org/wiki/Q5166604","display_name":"Convolution (computer science)","level":3,"score":0.4703281819820404},{"id":"https://openalex.org/C159620131","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Spatial analysis","level":2,"score":0.4638735055923462},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.446493536233902},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.382942259311676},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3827534317970276},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3777146339416504},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3525330424308777},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.3147786855697632},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22244417667388916},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.08816957473754883},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D048088","descriptor_name":"Informatics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D048088","descriptor_name":"Informatics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D048088","descriptor_name":"Informatics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.9b00410","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.9b00410","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:31438677","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31438677","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4463789455","display_name":null,"funder_award_id":"61602430","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5136345529","display_name":"\u57fa\u4e8e\u6c34\u4e0b\u89c6\u89c9\u7684\u6d77\u6d0b\u9c7c\u7c7b\u7ec6\u7c92\u5ea6\u8bc6\u522b\u548c\u9c81\u68d2\u8ddf\u8e2a\u7814\u7a76","funder_award_id":"61872326","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W807317906","https://openalex.org/W1607307044","https://openalex.org/W1665214252","https://openalex.org/W1678356000","https://openalex.org/W1832693441","https://openalex.org/W1975147762","https://openalex.org/W1978508948","https://openalex.org/W1988195734","https://openalex.org/W1993046136","https://openalex.org/W1999798000","https://openalex.org/W2007698848","https://openalex.org/W2008505552","https://openalex.org/W2033757486","https://openalex.org/W2046589863","https://openalex.org/W2076498053","https://openalex.org/W2081454243","https://openalex.org/W2100563036","https://openalex.org/W2128245586","https://openalex.org/W2139545576","https://openalex.org/W2163605009","https://openalex.org/W2163646378","https://openalex.org/W2171830166","https://openalex.org/W2189911347","https://openalex.org/W2290847742","https://openalex.org/W2306570595","https://openalex.org/W2540540415","https://openalex.org/W2594183968","https://openalex.org/W2781821160","https://openalex.org/W2784213390","https://openalex.org/W2809418595","https://openalex.org/W2860192827","https://openalex.org/W2894566366","https://openalex.org/W2911964244","https://openalex.org/W2913099012","https://openalex.org/W2916106175","https://openalex.org/W2949541494","https://openalex.org/W2952254971","https://openalex.org/W3100157108","https://openalex.org/W3105136071"],"related_works":["https://openalex.org/W2081900870","https://openalex.org/W2345479200","https://openalex.org/W2183306018","https://openalex.org/W2849310602","https://openalex.org/W3006008237","https://openalex.org/W2770593030","https://openalex.org/W3154990682","https://openalex.org/W2419146053","https://openalex.org/W4388890789","https://openalex.org/W3134175397"],"abstract_inverted_index":{"Accurate":[0],"prediction":[1,29],"of":[2,79],"molecular":[3,22,82,96],"properties":[4],"is":[5,12,25,45,106],"important":[6],"for":[7,27,69,94],"new":[8],"compound":[9],"design,":[10],"which":[11],"a":[13,38,62,91],"crucial":[14],"step":[15],"in":[16],"drug":[17],"discovery.":[18],"In":[19,36,73],"this":[20],"paper,":[21],"graph":[23,32,41,65],"data":[24],"utilized":[26],"property":[28],"based":[30],"on":[31,53,113],"convolution":[33,39,63],"neural":[34],"networks.":[35],"addition,":[37],"spatial":[40,50,64],"embedding":[42,66],"layer":[43],"(C-SGEL)":[44],"introduced":[46],"to":[47,60,75,89],"retain":[48],"the":[49,77,80,110],"connection":[51],"information":[52],"molecules.":[54],"And,":[55],"multiple":[56],"C-SGELs":[57],"are":[58,84],"stacked":[59],"construct":[61],"network":[67],"(C-SGEN)":[68],"end-to-end":[70],"representation":[71],"learning.":[72],"order":[74],"enhance":[76],"robustness":[78],"network,":[81],"fingerprints":[83],"also":[85],"combined":[86],"with":[87],"C-SGEN":[88],"build":[90],"composite":[92],"model":[93],"predicting":[95],"properties.":[97],"Our":[98],"comparative":[99],"experiments":[100],"have":[101],"shown":[102],"that":[103],"our":[104],"method":[105],"accurate":[107],"and":[108],"achieves":[109],"best":[111],"results":[112],"some":[114],"open":[115],"benchmark":[116],"datasets.":[117]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":25},{"year":2022,"cited_by_count":24},{"year":2021,"cited_by_count":29},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":2}],"updated_date":"2026-06-18T10:00:31.954636","created_date":"2025-10-10T00:00:00"}
