{"id":"https://openalex.org/W2965877034","doi":"https://doi.org/10.1021/acs.jcim.9b00376","title":"FAME 3: Predicting the Sites of Metabolism in Synthetic Compounds and Natural Products for Phase 1 and Phase 2 Metabolic Enzymes","display_name":"FAME 3: Predicting the Sites of Metabolism in Synthetic Compounds and Natural Products for Phase 1 and Phase 2 Metabolic Enzymes","publication_year":2019,"publication_date":"2019-07-30","ids":{"openalex":"https://openalex.org/W2965877034","doi":"https://doi.org/10.1021/acs.jcim.9b00376","mag":"2965877034","pmid":"https://pubmed.ncbi.nlm.nih.gov/31361490"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.9b00376","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.9b00376","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://hdl.handle.net/11250/2738719","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063973687","display_name":"Martin \u0160\u00edcho","orcid":"https://orcid.org/0000-0002-8771-1731"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]},{"id":"https://openalex.org/I9073902","display_name":"University of Chemistry and Technology, Prague","ror":"https://ror.org/05ggn0a85","country_code":"CZ","type":"education","lineage":["https://openalex.org/I9073902"]}],"countries":["CZ","DE"],"is_corresponding":false,"raw_author_name":"Martin \u0160\u00edcho","raw_affiliation_strings":["Faculty of Chemical Technology, Department of Informatics and Chemistry, CZ-OPENSCREEN: National Infrastructure for Chemical Biology, University of Chemistry and Technology Prague, 166 28 Prague 6, Czech Republic","Faculty of Mathematics, Informatics and Natural Sciences, Department of Informatics, Center for Bioinformatics, Universit\u00e4t Hamburg, 20146 Hamburg, Germany"],"raw_orcid":"https://orcid.org/0000-0002-8771-1731","affiliations":[{"raw_affiliation_string":"Faculty of Chemical Technology, Department of Informatics and Chemistry, CZ-OPENSCREEN: National Infrastructure for Chemical Biology, University of Chemistry and Technology Prague, 166 28 Prague 6, Czech Republic","institution_ids":["https://openalex.org/I9073902"]},{"raw_affiliation_string":"Faculty of Mathematics, Informatics and Natural Sciences, Department of Informatics, Center for Bioinformatics, Universit\u00e4t Hamburg, 20146 Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043723616","display_name":"Conrad Stork","orcid":"https://orcid.org/0000-0002-5499-742X"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Conrad Stork","raw_affiliation_strings":["Faculty of Mathematics, Informatics and Natural Sciences, Department of Informatics, Center for Bioinformatics, Universit\u00e4t Hamburg, 20146 Hamburg, Germany"],"raw_orcid":"https://orcid.org/0000-0002-5499-742X","affiliations":[{"raw_affiliation_string":"Faculty of Mathematics, Informatics and Natural Sciences, Department of Informatics, Center for Bioinformatics, Universit\u00e4t Hamburg, 20146 Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019195809","display_name":"Angelica Mazzolari","orcid":"https://orcid.org/0000-0003-1352-1094"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Angelica Mazzolari","raw_affiliation_strings":["Facolt\u00e0 di Scienze del Farmaco, Dipartimento di Scienze Farmaceutiche \u201cPietro Pratesi\u201d, Universit\u00e0 degli Studi di Milano, I-20133 Milan, Italy"],"raw_orcid":"https://orcid.org/0000-0003-1352-1094","affiliations":[{"raw_affiliation_string":"Facolt\u00e0 di Scienze del Farmaco, Dipartimento di Scienze Farmaceutiche \u201cPietro Pratesi\u201d, Universit\u00e0 degli Studi di Milano, I-20133 Milan, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034475539","display_name":"Christina de Bruyn Kops","orcid":"https://orcid.org/0000-0001-8890-2137"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christina de Bruyn Kops","raw_affiliation_strings":["Faculty of Mathematics, Informatics and Natural Sciences, Department of Informatics, Center for Bioinformatics, Universit\u00e4t Hamburg, 20146 Hamburg, Germany"],"raw_orcid":"https://orcid.org/0000-0001-8890-2137","affiliations":[{"raw_affiliation_string":"Faculty of Mathematics, Informatics and Natural Sciences, Department of Informatics, Center for Bioinformatics, Universit\u00e4t Hamburg, 20146 Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004734394","display_name":"Alessandro Pedretti","orcid":"https://orcid.org/0000-0001-5916-2029"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alessandro Pedretti","raw_affiliation_strings":["Facolt\u00e0 di Scienze del Farmaco, Dipartimento di Scienze Farmaceutiche \u201cPietro Pratesi\u201d, Universit\u00e0 degli Studi di Milano, I-20133 Milan, Italy"],"raw_orcid":"https://orcid.org/0000-0001-5916-2029","affiliations":[{"raw_affiliation_string":"Facolt\u00e0 di Scienze del Farmaco, Dipartimento di Scienze Farmaceutiche \u201cPietro Pratesi\u201d, Universit\u00e0 degli Studi di Milano, I-20133 Milan, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080796605","display_name":"Bernard Testa","orcid":"https://orcid.org/0000-0002-3218-4612"},"institutions":[{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Bernard Testa","raw_affiliation_strings":["University of Lausanne, 1015 Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Lausanne, 1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I97565354"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028843194","display_name":"Giulio Vistoli","orcid":"https://orcid.org/0000-0002-3939-5172"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giulio Vistoli","raw_affiliation_strings":["Facolt\u00e0 di Scienze del Farmaco, Dipartimento di Scienze Farmaceutiche \u201cPietro Pratesi\u201d, Universit\u00e0 degli Studi di Milano, I-20133 Milan, Italy"],"raw_orcid":"https://orcid.org/0000-0002-3939-5172","affiliations":[{"raw_affiliation_string":"Facolt\u00e0 di Scienze del Farmaco, Dipartimento di Scienze Farmaceutiche \u201cPietro Pratesi\u201d, Universit\u00e0 degli Studi di Milano, I-20133 Milan, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082393460","display_name":"Daniel Svozil","orcid":"https://orcid.org/0000-0003-2577-5163"},"institutions":[{"id":"https://openalex.org/I9073902","display_name":"University of Chemistry and Technology, Prague","ror":"https://ror.org/05ggn0a85","country_code":"CZ","type":"education","lineage":["https://openalex.org/I9073902"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Daniel Svozil","raw_affiliation_strings":["Faculty of Chemical Technology, Department of Informatics and Chemistry, CZ-OPENSCREEN: National Infrastructure for Chemical Biology, University of Chemistry and Technology Prague, 166 28 Prague 6, Czech Republic"],"raw_orcid":"https://orcid.org/0000-0003-2577-5163","affiliations":[{"raw_affiliation_string":"Faculty of Chemical Technology, Department of Informatics and Chemistry, CZ-OPENSCREEN: National Infrastructure for Chemical Biology, University of Chemistry and Technology Prague, 166 28 Prague 6, Czech Republic","institution_ids":["https://openalex.org/I9073902"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065353728","display_name":"Johannes Kirchmair","orcid":"https://orcid.org/0000-0003-2667-5877"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Johannes Kirchmair","raw_affiliation_strings":["Faculty of Mathematics, Informatics and Natural Sciences, Department of Informatics, Center for Bioinformatics, Universit\u00e4t Hamburg, 20146 Hamburg, Germany"],"raw_orcid":"https://orcid.org/0000-0003-2667-5877","affiliations":[{"raw_affiliation_string":"Faculty of Mathematics, Informatics and Natural Sciences, Department of Informatics, Center for Bioinformatics, Universit\u00e4t Hamburg, 20146 Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5065353728"],"corresponding_institution_ids":["https://openalex.org/I159176309"],"apc_list":null,"apc_paid":null,"fwci":12.3399,"has_fulltext":false,"cited_by_count":126,"citation_normalized_percentile":{"value":0.98982903,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"59","issue":"8","first_page":"3400","last_page":"3412"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cytochrome-p450","display_name":"Cytochrome P450","score":0.4905504584312439},{"id":"https://openalex.org/keywords/metabolism","display_name":"Metabolism","score":0.48417407274246216},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.46449947357177734},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4404015839099884},{"id":"https://openalex.org/keywords/chemical-space","display_name":"Chemical space","score":0.4213860332965851},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.36419546604156494},{"id":"https://openalex.org/keywords/combinatorial-chemistry","display_name":"Combinatorial chemistry","score":0.3227469325065613},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2518962025642395}],"concepts":[{"id":"https://openalex.org/C526171541","wikidata":"https://www.wikidata.org/wiki/Q407693","display_name":"Cytochrome P450","level":3,"score":0.4905504584312439},{"id":"https://openalex.org/C62231903","wikidata":"https://www.wikidata.org/wiki/Q1057","display_name":"Metabolism","level":2,"score":0.48417407274246216},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.46449947357177734},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4404015839099884},{"id":"https://openalex.org/C99726746","wikidata":"https://www.wikidata.org/wiki/Q906396","display_name":"Chemical space","level":3,"score":0.4213860332965851},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.36419546604156494},{"id":"https://openalex.org/C21951064","wikidata":"https://www.wikidata.org/wiki/Q899212","display_name":"Combinatorial chemistry","level":1,"score":0.3227469325065613},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2518962025642395}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062313","descriptor_name":"Databases, Pharmaceutical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062313","descriptor_name":"Databases, Pharmaceutical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062313","descriptor_name":"Databases, Pharmaceutical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1021/acs.jcim.9b00376","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.9b00376","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:31361490","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31361490","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:bora.uib.no:11250/2738719","is_oa":true,"landing_page_url":"https://hdl.handle.net/11250/2738719","pdf_url":null,"source":{"id":"https://openalex.org/S4306401716","display_name":"Duo Research Archive (University of Oslo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184942183","host_organization_name":"University of Oslo","host_organization_lineage":["https://openalex.org/I184942183"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:iris.unil.ch:iris/242979","is_oa":false,"landing_page_url":"https://iris.unil.ch/handle/iris/242979","pdf_url":null,"source":{"id":"https://openalex.org/S7407055444","display_name":"IRIS","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:serval.unil.ch:BIB_E369C8DCD8D0","is_oa":false,"landing_page_url":"https://serval.unil.ch/notice/serval:BIB_E369C8DCD8D0","pdf_url":null,"source":{"id":"https://openalex.org/S4306401797","display_name":"SERVAL (Universit\u00e9 de Lausanne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210093590","host_organization_name":"Swiss School of Archaeology in Greece","host_organization_lineage":["https://openalex.org/I4210093590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of chemical information and modeling, vol. 59, no. 8, pp. 3400-3412","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:bora.uib.no:11250/2738719","is_oa":true,"landing_page_url":"https://hdl.handle.net/11250/2738719","pdf_url":null,"source":{"id":"https://openalex.org/S4306401716","display_name":"Duo Research Archive (University of Oslo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184942183","host_organization_name":"University of Oslo","host_organization_lineage":["https://openalex.org/I184942183"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1278649354","display_name":null,"funder_award_id":"21-SVV/2018","funder_id":"https://openalex.org/F4320321005","funder_display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy"},{"id":"https://openalex.org/G129484595","display_name":"National Infrastructure for Chemical Biology","funder_award_id":"LM2015063","funder_id":"https://openalex.org/F4320321005","funder_display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy"},{"id":"https://openalex.org/G4521197033","display_name":null,"funder_award_id":"BFS2017TMT01","funder_id":"https://openalex.org/F4320323898","funder_display_name":"Bergens Forskningsstiftelse"},{"id":"https://openalex.org/G4988322259","display_name":null,"funder_award_id":"RVO 68378050-KAV-NPUI","funder_id":"https://openalex.org/F4320321005","funder_display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy"},{"id":"https://openalex.org/G5996761255","display_name":null,"funder_award_id":"KI 2085/1-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321005","display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy","ror":"https://ror.org/037n8p820"},{"id":"https://openalex.org/F4320323898","display_name":"Bergens Forskningsstiftelse","ror":"https://ror.org/04efaep75"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W1913686449","https://openalex.org/W1974254541","https://openalex.org/W1974707882","https://openalex.org/W2027059486","https://openalex.org/W2032271067","https://openalex.org/W2068540035","https://openalex.org/W2069457036","https://openalex.org/W2073619468","https://openalex.org/W2075550795","https://openalex.org/W2088226047","https://openalex.org/W2090505208","https://openalex.org/W2117750093","https://openalex.org/W2148797284","https://openalex.org/W2166363384","https://openalex.org/W2256742438","https://openalex.org/W2276476475","https://openalex.org/W2345198528","https://openalex.org/W2366335021","https://openalex.org/W2402997569","https://openalex.org/W2473257559","https://openalex.org/W2614198047","https://openalex.org/W2620775625","https://openalex.org/W2742528013","https://openalex.org/W2772275705","https://openalex.org/W2891085910","https://openalex.org/W2900981302","https://openalex.org/W2909463267","https://openalex.org/W2911366920","https://openalex.org/W2950863675","https://openalex.org/W4255392081"],"related_works":["https://openalex.org/W2973074952","https://openalex.org/W4283395020","https://openalex.org/W4320732452","https://openalex.org/W135095951","https://openalex.org/W4286980196","https://openalex.org/W4385588199","https://openalex.org/W3199987505","https://openalex.org/W4385760073","https://openalex.org/W2600435468","https://openalex.org/W2324927567"],"abstract_inverted_index":{"In":[0,91],"this":[1],"work":[2],"we":[3],"present":[4,176],"the":[5,20,45,158,178,185,205],"third":[6],"generation":[7],"of":[8,15,22,24,141,184,207],"FAst":[9],"MEtabolizer":[10],"(FAME":[11],"3),":[12],"a":[13,57,111,124,191,201,215,223],"collection":[14],"extra":[16],"trees":[17],"classifiers":[18],"for":[19,110,123,127,167,229],"prediction":[21],"sites":[23],"metabolism":[25,64,137],"(SoMs)":[26],"in":[27,177,204],"small":[28],"molecules":[29,168],"such":[30],"as":[31,222],"drugs,":[32],"druglike":[33],"compounds,":[34,150],"natural":[35,151,154],"products,":[36,152],"agrochemicals,":[37],"and":[38,84,88,117,153,163,221,231],"cosmetics.":[39],"FAME":[40,96,210],"3":[41,97,211],"was":[42],"derived":[43],"from":[44,108,144,174],"MetaQSAR":[46],"database":[47],"(Pedretti":[48],"et":[49],"al.":[50],"J.":[51],"Med.":[52],"Chem.":[53],"2018,":[54],"61,":[55],"1019),":[56],"recently":[58],"published":[59],"data":[60,165],"resource":[61],"on":[62,134,200],"xenobiotic":[63],"that":[65,197],"contains":[66],"more":[67,73],"than":[68,74],"2100":[69],"substrates":[70],"annotated":[71],"with":[72,93,102,147,169],"6300":[75],"experimentally":[76],"confirmed":[77],"SoMs":[78],"related":[79],"to":[80,121],"redox":[81],"reactions,":[82,87],"hydrolysis":[83],"other":[85],"nonredox":[86],"conjugation":[89],"reactions.":[90],"tests":[92],"holdout":[94],"data,":[95],"models":[98,187],"reached":[99],"competitive":[100],"performance,":[101],"Matthews":[103],"correlation":[104],"coefficients":[105],"(MCCs)":[106],"ranging":[107],"0.50":[109],"global":[112],"model":[113,126,132,161],"covering":[114],"phase":[115,118,128],"1":[116],"2":[119,129],"metabolism,":[120],"0.75":[122],"focused":[125,133],"metabolism.":[130],"A":[131],"cytochrome":[135],"P450":[136],"yielded":[138],"an":[139],"MCC":[140],"0.57.":[142],"Results":[143],"case":[145],"studies":[146],"several":[148],"synthetic":[149],"product":[155],"derivatives":[156],"demonstrate":[157],"agreement":[159],"between":[160],"predictions":[162],"literature":[164],"even":[166],"structural":[170],"patterns":[171],"clearly":[172],"distinct":[173],"those":[175],"training":[179],"data.":[180],"The":[181],"applicability":[182],"domains":[183],"individual":[186],"were":[188],"estimated":[189],"by":[190],"new,":[192],"atom-based":[193],"distance":[194],"measure":[195],"(FAMEscore)":[196],"is":[198,212],"based":[199],"nearest-neighbor":[202],"search":[203],"space":[206],"atom":[208],"environments.":[209],"available":[213],"via":[214],"public":[216],"web":[217],"service":[218],"at":[219],"https://nerdd.zbh.uni-hamburg.de/":[220],"self-contained":[224],"Java":[225],"software":[226],"package,":[227],"free":[228],"academic":[230],"noncommercial":[232],"research.":[233]},"counts_by_year":[{"year":2026,"cited_by_count":11},{"year":2025,"cited_by_count":20},{"year":2024,"cited_by_count":14},{"year":2023,"cited_by_count":16},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":40},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":2}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
