{"id":"https://openalex.org/W2931997110","doi":"https://doi.org/10.1021/acs.jcim.8b00960","title":"<i>CovaDOTS: In Silico</i> Chemistry-Driven Tool to Design Covalent Inhibitors Using a Linking Strategy","display_name":"<i>CovaDOTS: In Silico</i> Chemistry-Driven Tool to Design Covalent Inhibitors Using a Linking Strategy","publication_year":2019,"publication_date":"2019-03-25","ids":{"openalex":"https://openalex.org/W2931997110","doi":"https://doi.org/10.1021/acs.jcim.8b00960","mag":"2931997110","pmid":"https://pubmed.ncbi.nlm.nih.gov/30908019"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.8b00960","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.8b00960","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://hal.archives-ouvertes.fr/hal-02145511","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5105510950","display_name":"Laurent Hoffer","orcid":"https://orcid.org/0000-0003-1906-7128"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210144608","display_name":"Centre de Recherche en Canc\u00e9rologie de Marseille","ror":"https://ror.org/0494jpz02","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210144608","https://openalex.org/I4210150365"]},{"id":"https://openalex.org/I4210150365","display_name":"Institut Paoli-Calmettes","ror":"https://ror.org/04s3t1g37","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I4210150365"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Laurent Hoffer","raw_affiliation_strings":["Aix Marseille Univ, CNRS, Inserm, Institut Paoli Calmettes, CRCM, Marseille CEDEX 09 13273, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Aix Marseille Univ, CNRS, Inserm, Institut Paoli Calmettes, CRCM, Marseille CEDEX 09 13273, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I4210144608","https://openalex.org/I4210150365"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008034085","display_name":"Magal\u00ed S\u00e1ez\u2010Ayala","orcid":"https://orcid.org/0000-0002-8726-0053"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210144608","display_name":"Centre de Recherche en Canc\u00e9rologie de Marseille","ror":"https://ror.org/0494jpz02","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210144608","https://openalex.org/I4210150365"]},{"id":"https://openalex.org/I4210150365","display_name":"Institut Paoli-Calmettes","ror":"https://ror.org/04s3t1g37","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I4210150365"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Magali Saez-Ayala","raw_affiliation_strings":["Aix Marseille Univ, CNRS, Inserm, Institut Paoli Calmettes, CRCM, Marseille CEDEX 09 13273, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Aix Marseille Univ, CNRS, Inserm, Institut Paoli Calmettes, CRCM, Marseille CEDEX 09 13273, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I4210144608","https://openalex.org/I4210150365"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031667486","display_name":"Dragos Horvath","orcid":"https://orcid.org/0000-0003-0173-5714"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4387153550","display_name":"Chimie de la Mati\u00e8re Complexe","ror":"https://ror.org/01cgac405","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4387153550","https://openalex.org/I68947357"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Dragos Horvath","raw_affiliation_strings":["Laboratoire de Chemoinformatique, CNRS UMR7140, 1 rue Blaise Pascal, 67000 Strasbourg, France"],"raw_orcid":"https://orcid.org/0000-0003-0173-5714","affiliations":[{"raw_affiliation_string":"Laboratoire de Chemoinformatique, CNRS UMR7140, 1 rue Blaise Pascal, 67000 Strasbourg, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4387153550"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070041767","display_name":"Alexandre Varnek","orcid":"https://orcid.org/0000-0003-1886-925X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210096046","display_name":"Institut de Chimie de Strasbourg","ror":"https://ror.org/00se7bf12","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210096046","https://openalex.org/I4210128300","https://openalex.org/I68947357"]},{"id":"https://openalex.org/I4387153550","display_name":"Chimie de la Mati\u00e8re Complexe","ror":"https://ror.org/01cgac405","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4387153550","https://openalex.org/I68947357"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Alexandre Varnek","raw_affiliation_strings":["Laboratoire de Chemoinformatique, CNRS UMR7140, 1 rue Blaise Pascal, 67000 Strasbourg, France","Institut de Chimie de Strasbourg (1 rue Blaise Pascal BP 296R8 67008 STRASBOURG CEDEX - France)"],"raw_orcid":"https://orcid.org/0000-0003-1886-925X","affiliations":[{"raw_affiliation_string":"Laboratoire de Chemoinformatique, CNRS UMR7140, 1 rue Blaise Pascal, 67000 Strasbourg, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4387153550"]},{"raw_affiliation_string":"Institut de Chimie de Strasbourg (1 rue Blaise Pascal BP 296R8 67008 STRASBOURG CEDEX - France)","institution_ids":["https://openalex.org/I4210096046"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019837871","display_name":"Xavier Morelli","orcid":"https://orcid.org/0000-0001-8101-7901"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210144608","display_name":"Centre de Recherche en Canc\u00e9rologie de Marseille","ror":"https://ror.org/0494jpz02","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210144608","https://openalex.org/I4210150365"]},{"id":"https://openalex.org/I4210150365","display_name":"Institut Paoli-Calmettes","ror":"https://ror.org/04s3t1g37","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I4210150365"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Xavier Morelli","raw_affiliation_strings":["Aix Marseille Univ, CNRS, Inserm, Institut Paoli Calmettes, CRCM, Marseille CEDEX 09 13273, France"],"raw_orcid":"https://orcid.org/0000-0001-8101-7901","affiliations":[{"raw_affiliation_string":"Aix Marseille Univ, CNRS, Inserm, Institut Paoli Calmettes, CRCM, Marseille CEDEX 09 13273, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I4210144608","https://openalex.org/I4210150365"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089306310","display_name":"Philippe Roche","orcid":"https://orcid.org/0000-0002-5580-0588"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210144608","display_name":"Centre de Recherche en Canc\u00e9rologie de Marseille","ror":"https://ror.org/0494jpz02","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210144608","https://openalex.org/I4210150365"]},{"id":"https://openalex.org/I4210150365","display_name":"Institut Paoli-Calmettes","ror":"https://ror.org/04s3t1g37","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I4210150365"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Philippe Roche","raw_affiliation_strings":["Aix Marseille Univ, CNRS, Inserm, Institut Paoli Calmettes, CRCM, Marseille CEDEX 09 13273, France"],"raw_orcid":"https://orcid.org/0000-0002-5580-0588","affiliations":[{"raw_affiliation_string":"Aix Marseille Univ, CNRS, Inserm, Institut Paoli Calmettes, CRCM, Marseille CEDEX 09 13273, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I4210144608","https://openalex.org/I4210150365"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5019837871","https://openalex.org/A5089306310"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I4210144608","https://openalex.org/I4210150365"],"apc_list":null,"apc_paid":null,"fwci":1.1054,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.72551072,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"59","issue":"4","first_page":"1472","last_page":"1485"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11440","display_name":"Click Chemistry and Applications","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11440","display_name":"Click Chemistry and Applications","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/covalent-bond","display_name":"Covalent bond","score":0.7766374349594116},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.6384384632110596},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.5955336689949036},{"id":"https://openalex.org/keywords/combinatorial-chemistry","display_name":"Combinatorial chemistry","score":0.5790408253669739},{"id":"https://openalex.org/keywords/non-covalent-interactions","display_name":"Non-covalent interactions","score":0.5364784598350525},{"id":"https://openalex.org/keywords/adduct","display_name":"Adduct","score":0.42219239473342896},{"id":"https://openalex.org/keywords/small-molecule","display_name":"Small molecule","score":0.4105326533317566},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3957187533378601},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.377867728471756},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.3218822479248047},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.1989521086215973},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1934851109981537},{"id":"https://openalex.org/keywords/organic-chemistry","display_name":"Organic chemistry","score":0.16490313410758972},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.1316530704498291},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09334835410118103}],"concepts":[{"id":"https://openalex.org/C180577832","wikidata":"https://www.wikidata.org/wiki/Q127920","display_name":"Covalent bond","level":2,"score":0.7766374349594116},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.6384384632110596},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.5955336689949036},{"id":"https://openalex.org/C21951064","wikidata":"https://www.wikidata.org/wiki/Q899212","display_name":"Combinatorial chemistry","level":1,"score":0.5790408253669739},{"id":"https://openalex.org/C137277065","wikidata":"https://www.wikidata.org/wiki/Q2915446","display_name":"Non-covalent interactions","level":4,"score":0.5364784598350525},{"id":"https://openalex.org/C108204754","wikidata":"https://www.wikidata.org/wiki/Q353392","display_name":"Adduct","level":2,"score":0.42219239473342896},{"id":"https://openalex.org/C161624437","wikidata":"https://www.wikidata.org/wiki/Q1988322","display_name":"Small molecule","level":2,"score":0.4105326533317566},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3957187533378601},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.377867728471756},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.3218822479248047},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.1989521086215973},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1934851109981537},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.16490313410758972},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.1316530704498291},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09334835410118103},{"id":"https://openalex.org/C112887158","wikidata":"https://www.wikidata.org/wiki/Q169324","display_name":"Hydrogen bond","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1021/acs.jcim.8b00960","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.8b00960","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:30908019","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30908019","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:HAL:hal-02108686v1","is_oa":false,"landing_page_url":"https://hal.archives-ouvertes.fr/hal-02108686","pdf_url":null,"source":{"id":"https://openalex.org/S4406922276","display_name":"INRIA a CCSD electronic archive server","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1549-9596","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:HAL:hal-02145507v1","is_oa":false,"landing_page_url":"https://hal.science/hal-02145507","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Chemical Information and Modeling, 2019, 59 (4), pp.1472-1485. &#x27E8;10.1021/acs.jcim.8b00960&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:HAL:hal-02145511v1","is_oa":true,"landing_page_url":"https://hal.archives-ouvertes.fr/hal-02145511","pdf_url":null,"source":null,"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1549-9596","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:HAL:hal-02950508v1","is_oa":false,"landing_page_url":"https://hal.archives-ouvertes.fr/hal-02950508","pdf_url":null,"source":{"id":"https://openalex.org/S4406922276","display_name":"INRIA a CCSD electronic archive server","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1549-9596","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:HAL:hal-02145511v1","is_oa":true,"landing_page_url":"https://hal.archives-ouvertes.fr/hal-02145511","pdf_url":null,"source":null,"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1549-9596","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3095745432","display_name":"Innovating Strategy to modulate Protein-Protein Interaction","funder_award_id":"ANR-15-CE18-0023","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G3425982724","display_name":null,"funder_award_id":"PJA20171206125","funder_id":"https://openalex.org/F4320322361","funder_display_name":"Fondation ARC pour la Recherche sur le Cancer"},{"id":"https://openalex.org/G8227213121","display_name":"Methodological development to accelerate identification & optimization of covalent hits","funder_award_id":"ANR-20-CE18-0025","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320322361","display_name":"Fondation ARC pour la Recherche sur le Cancer","ror":"https://ror.org/0489qz649"},{"id":"https://openalex.org/F4320323775","display_name":"Cancerop\u00f4le PACA","ror":"https://ror.org/01mwvah42"},{"id":"https://openalex.org/F4320323807","display_name":"Institut National Du Cancer","ror":"https://ror.org/03m8vkq32"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":55,"referenced_works":["https://openalex.org/W1484101819","https://openalex.org/W1490536666","https://openalex.org/W1499781316","https://openalex.org/W1931365650","https://openalex.org/W1963758313","https://openalex.org/W1964172938","https://openalex.org/W1966130105","https://openalex.org/W1974645020","https://openalex.org/W2002368219","https://openalex.org/W2003757380","https://openalex.org/W2010993054","https://openalex.org/W2019216438","https://openalex.org/W2022321294","https://openalex.org/W2027974277","https://openalex.org/W2029087609","https://openalex.org/W2036005030","https://openalex.org/W2036160927","https://openalex.org/W2036785342","https://openalex.org/W2037825667","https://openalex.org/W2041098455","https://openalex.org/W2050456292","https://openalex.org/W2051163038","https://openalex.org/W2051164408","https://openalex.org/W2088145034","https://openalex.org/W2100124736","https://openalex.org/W2110425683","https://openalex.org/W2110841878","https://openalex.org/W2114195503","https://openalex.org/W2140384824","https://openalex.org/W2154969724","https://openalex.org/W2208203352","https://openalex.org/W2235472800","https://openalex.org/W2254024823","https://openalex.org/W2286158735","https://openalex.org/W2322586343","https://openalex.org/W2469411250","https://openalex.org/W2508430021","https://openalex.org/W2753898964","https://openalex.org/W2769901316","https://openalex.org/W2783215515","https://openalex.org/W2792455800","https://openalex.org/W2796108867","https://openalex.org/W2797137144","https://openalex.org/W2800029633","https://openalex.org/W2801405255","https://openalex.org/W2803123594","https://openalex.org/W2805483395","https://openalex.org/W2807112095","https://openalex.org/W2808301808","https://openalex.org/W2808655460","https://openalex.org/W2809408016","https://openalex.org/W2883560796","https://openalex.org/W2889044551","https://openalex.org/W2895733290","https://openalex.org/W2904506792"],"related_works":["https://openalex.org/W2912862995","https://openalex.org/W3129816939","https://openalex.org/W2985427592","https://openalex.org/W4249940513","https://openalex.org/W2009680696","https://openalex.org/W2272768164","https://openalex.org/W2586734331","https://openalex.org/W2341090385","https://openalex.org/W2007530715","https://openalex.org/W3198761186"],"abstract_inverted_index":{"We":[0],"recently":[1],"reported":[2],"an":[3,136],"integrated":[4],"fragment-based":[5],"optimization":[6],"strategy":[7,51],"called":[8],"DOTS":[9,50],"(Diversity":[10],"Oriented":[11],"Target-focused":[12],"Synthesis)":[13],"that":[14],"combines":[15],"automated":[16],"virtual":[17],"screening":[18],"(VS)":[19],"with":[20,62,95],"semirobotized":[21],"organic":[22,93],"synthesis":[23],"coupled":[24],"to":[25,89,120,127,164],"in":[26,112],"vitro":[27],"evaluation.":[28],"The":[29,101],"molecular":[30],"modeling":[31],"part":[32],"consists":[33],"of":[34,48,73,82,103,161],"hit-to-lead":[35],"chemistry,":[36],"based":[37],"on":[38,66],"the":[39,46,49,70,147,159,162],"growing":[40],"paradigm.":[41],"Here,":[42],"we":[43],"have":[44,117],"extended":[45],"applicability":[47],"by":[52],"adding":[53],"new":[54],"functionalities,":[55],"allowing":[56],"a":[57,63,79,91,96],"generic":[58],"chemistry-driven":[59],"linking":[60],"approach":[61,163],"particular":[64],"emphasis":[65],"covalent":[67,71,121,131,166],"drugs.":[68],"Indeed,":[69],"mode":[72],"action":[74],"can":[75],"be":[76],"described":[77],"as":[78],"specific":[80],"case":[81],"linking,":[83],"where":[84],"suitable":[85],"linkers":[86],"are":[87,150],"sought":[88],"fuse":[90],"bound":[92],"compound":[94],"nucleophilic":[97],"protein":[98],"side":[99],"chain.":[100],"proof":[102],"concept":[104],"is":[105,125],"established":[106],"using":[107],"three":[108],"retrospective":[109],"study":[110],"cases":[111],"which":[113],"known":[114],"noncovalent":[115],"inhibitors":[116,132],"been":[118],"converted":[119],"inhibitors.":[122,167],"Our":[123],"method":[124],"able":[126],"automatically":[128],"design":[129,165],"reference":[130,148],"(and/or":[133],"analogs)":[134],"from":[135],"initial":[137],"activated":[138],"substructure":[139],"and":[140],"predict":[141],"their":[142],"binding":[143],"mode.":[144],"More":[145],"importantly,":[146],"compounds":[149],"ranked":[151],"high":[152],"among":[153],"several":[154],"hundred":[155],"putative":[156],"adducts,":[157],"demonstrating":[158],"utility":[160]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":3}],"updated_date":"2026-07-27T21:06:14.890428","created_date":"2019-04-11T00:00:00"}
