{"id":"https://openalex.org/W2898507712","doi":"https://doi.org/10.1021/acs.jcim.8b00528","title":"Sparse Generative Topographic Mapping for Both Data Visualization and Clustering","display_name":"Sparse Generative Topographic Mapping for Both Data Visualization and Clustering","publication_year":2018,"publication_date":"2018-10-23","ids":{"openalex":"https://openalex.org/W2898507712","doi":"https://doi.org/10.1021/acs.jcim.8b00528","mag":"2898507712","pmid":"https://pubmed.ncbi.nlm.nih.gov/30352147"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.8b00528","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.8b00528","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082283686","display_name":"Hiromasa Kaneko","orcid":"https://orcid.org/0000-0001-8367-6476"},"institutions":[{"id":"https://openalex.org/I16656306","display_name":"Meiji University","ror":"https://ror.org/02rqvrp93","country_code":"JP","type":"education","lineage":["https://openalex.org/I16656306"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Hiromasa Kaneko","raw_affiliation_strings":["Department of Applied Chemistry, School of Science and Technology, Meiji University, 1-1-1 Higashi-Mita, Tama-ku, Kawasaki, Kanagawa 214-8571, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Applied Chemistry, School of Science and Technology, Meiji University, 1-1-1 Higashi-Mita, Tama-ku, Kawasaki, Kanagawa 214-8571, Japan","institution_ids":["https://openalex.org/I16656306"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5082283686"],"corresponding_institution_ids":["https://openalex.org/I16656306"],"apc_list":null,"apc_paid":null,"fwci":0.6515,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.77248405,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"58","issue":"12","first_page":"2528","last_page":"2535"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10637","display_name":"Advanced Clustering Algorithms Research","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10637","display_name":"Advanced Clustering Algorithms Research","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10824","display_name":"Image Retrieval and Classification Techniques","score":0.9891999959945679,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9707000255584717,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7426286339759827},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7290701270103455},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7018577456474304},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.6571506857872009},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.6014822125434875},{"id":"https://openalex.org/keywords/matlab","display_name":"MATLAB","score":0.47635889053344727},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.4569862186908722},{"id":"https://openalex.org/keywords/property","display_name":"Property (philosophy)","score":0.4552016854286194},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.437372624874115},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.421004056930542},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3615608811378479},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32456251978874207},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.20996659994125366}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7426286339759827},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7290701270103455},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7018577456474304},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.6571506857872009},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.6014822125434875},{"id":"https://openalex.org/C2780365114","wikidata":"https://www.wikidata.org/wiki/Q169478","display_name":"MATLAB","level":2,"score":0.47635889053344727},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.4569862186908722},{"id":"https://openalex.org/C189950617","wikidata":"https://www.wikidata.org/wiki/Q937228","display_name":"Property (philosophy)","level":2,"score":0.4552016854286194},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.437372624874115},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.421004056930542},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3615608811378479},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32456251978874207},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.20996659994125366},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004785","descriptor_name":"Environmental Pollutants","qualifier_ui":"Q000633","qualifier_name":"toxicity","is_major_topic":false},{"descriptor_ui":"D004785","descriptor_name":"Environmental Pollutants","qualifier_ui":"Q000633","qualifier_name":"toxicity","is_major_topic":false},{"descriptor_ui":"D004785","descriptor_name":"Environmental Pollutants","qualifier_ui":"Q000633","qualifier_name":"toxicity","is_major_topic":false},{"descriptor_ui":"D004785","descriptor_name":"Environmental Pollutants","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004785","descriptor_name":"Environmental Pollutants","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004785","descriptor_name":"Environmental Pollutants","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012995","descriptor_name":"Solubility","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012995","descriptor_name":"Solubility","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012995","descriptor_name":"Solubility","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021281","descriptor_name":"Quantitative Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021281","descriptor_name":"Quantitative Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021281","descriptor_name":"Quantitative Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.8b00528","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.8b00528","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:30352147","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30352147","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W1601795611","https://openalex.org/W1964747032","https://openalex.org/W1982264103","https://openalex.org/W1983393839","https://openalex.org/W1990517717","https://openalex.org/W2009000921","https://openalex.org/W2047555270","https://openalex.org/W2053186076","https://openalex.org/W2055246239","https://openalex.org/W2065775128","https://openalex.org/W2089468765","https://openalex.org/W2093402979","https://openalex.org/W2097980122","https://openalex.org/W2105687791","https://openalex.org/W2107636931","https://openalex.org/W2108995755","https://openalex.org/W2120035315","https://openalex.org/W2138538314","https://openalex.org/W2146199513","https://openalex.org/W2187089797","https://openalex.org/W2217436801","https://openalex.org/W2259914299","https://openalex.org/W2557126994","https://openalex.org/W2793997868","https://openalex.org/W2893120173","https://openalex.org/W4237377395","https://openalex.org/W4256512587"],"related_works":["https://openalex.org/W4226047925","https://openalex.org/W2013728941","https://openalex.org/W4225274103","https://openalex.org/W2579659702","https://openalex.org/W2154046714","https://openalex.org/W1965329638","https://openalex.org/W1574055964","https://openalex.org/W2923661510","https://openalex.org/W2189613078","https://openalex.org/W2586219255"],"abstract_inverted_index":{"To":[0],"achieve":[1],"simultaneous":[2],"data":[3,45,72,83,103],"visualization":[4,95],"and":[5,79,101,107],"clustering,":[6],"the":[7,19,24,33,41,64,87,91,98,111],"method":[8],"of":[9,26,56,69,94],"sparse":[10],"generative":[11],"topographic":[12],"mapping":[13],"(SGTM)":[14],"is":[15,30,58],"developed":[16],"by":[17,60],"modifying":[18],"conventional":[20],"GTM":[21,100],"algorithm.":[22],"While":[23],"weight":[25],"each":[27],"grid":[28],"point":[29],"constant":[31],"in":[32,40],"original":[34,99],"GTM,":[35],"it":[36],"becomes":[37],"a":[38],"variable":[39],"proposed":[42,88,112],"SGTM,":[43],"enabling":[44],"points":[46,104],"to":[47],"be":[48],"clustered":[49],"on":[50,63],"two-dimensional":[51],"maps.":[52],"The":[53],"appropriate":[54],"number":[55],"clusters":[57,102],"determined":[59],"optimization":[61],"based":[62],"Bayesian":[65],"information":[66],"criterion.":[67],"Analysis":[68],"numerical":[70],"simulation":[71],"sets":[73,84],"along":[74],"with":[75],"quantitative":[76,80],"structure-property":[77],"relationship":[78,82],"structure-activity":[81],"confirmed":[85],"that":[86],"SGTM":[89],"provides":[90],"same":[92],"degree":[93],"performance":[96],"as":[97],"appropriately.":[105],"Python":[106],"MATLAB":[108],"codes":[109],"for":[110],"algorithm":[113],"are":[114],"available":[115],"at":[116],"https://github.com/hkaneko1985/gtm-generativetopographicmapping":[117],".":[118]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
