{"id":"https://openalex.org/W2807496814","doi":"https://doi.org/10.1021/acs.jcim.8b00375","title":"Exhaustive Exploration of the Conformational Landscape of Small Cyclic Peptides Using a Robotics Approach","display_name":"Exhaustive Exploration of the Conformational Landscape of Small Cyclic Peptides Using a Robotics Approach","publication_year":2018,"publication_date":"2018-10-09","ids":{"openalex":"https://openalex.org/W2807496814","doi":"https://doi.org/10.1021/acs.jcim.8b00375","mag":"2807496814","pmid":"https://pubmed.ncbi.nlm.nih.gov/30299093"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.8b00375","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.8b00375","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://laas.hal.science/hal-01893751","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018285696","display_name":"Maud Jusot","orcid":"https://orcid.org/0000-0002-6092-4286"},"institutions":[{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I190497903","display_name":"Laboratoire d'Analyse et d'Architecture des Syst\u00e8mes","ror":"https://ror.org/03vcm6439","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I134560555","https://openalex.org/I190497903","https://openalex.org/I196454796","https://openalex.org/I205747304","https://openalex.org/I205747304","https://openalex.org/I4210095849","https://openalex.org/I4210159245","https://openalex.org/I4387153255","https://openalex.org/I4405258862","https://openalex.org/I4405258862","https://openalex.org/I4405258862","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I4210145605","display_name":"Institut de min\u00e9ralogie, de physique des mat\u00e9riaux et de cosmochimie","ror":"https://ror.org/05abgg682","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I2802818602","https://openalex.org/I39804081","https://openalex.org/I4210090127","https://openalex.org/I4210098836","https://openalex.org/I4210123595","https://openalex.org/I4210131494","https://openalex.org/I4210145605","https://openalex.org/I4210166444"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Maud Jusot","raw_affiliation_strings":["LAAS-CNRS, Universit\u00e9 de Toulouse, CNRS, 31400 Toulouse, France","Sorbonne Universit\u00e9, MNHN, CNRS, IRD, Institut de Min\u00e9ralogie, de Physique des Mat\u00e9riaux et de Cosmochimie, IMPMC, 75005 Paris, France"],"affiliations":[{"raw_affiliation_string":"LAAS-CNRS, Universit\u00e9 de Toulouse, CNRS, 31400 Toulouse, France","institution_ids":["https://openalex.org/I17866349","https://openalex.org/I1294671590","https://openalex.org/I190497903"]},{"raw_affiliation_string":"Sorbonne Universit\u00e9, MNHN, CNRS, IRD, Institut de Min\u00e9ralogie, de Physique des Mat\u00e9riaux et de Cosmochimie, IMPMC, 75005 Paris, France","institution_ids":["https://openalex.org/I4210145605","https://openalex.org/I39804081","https://openalex.org/I4210166444","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008261497","display_name":"Dirk Stratmann","orcid":null},"institutions":[{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210145605","display_name":"Institut de min\u00e9ralogie, de physique des mat\u00e9riaux et de cosmochimie","ror":"https://ror.org/05abgg682","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I2802818602","https://openalex.org/I39804081","https://openalex.org/I4210090127","https://openalex.org/I4210098836","https://openalex.org/I4210123595","https://openalex.org/I4210131494","https://openalex.org/I4210145605","https://openalex.org/I4210166444"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Dirk Stratmann","raw_affiliation_strings":["Sorbonne Universit\u00e9, MNHN, CNRS, IRD, Institut de Min\u00e9ralogie, de Physique des Mat\u00e9riaux et de Cosmochimie, IMPMC, 75005 Paris, France"],"affiliations":[{"raw_affiliation_string":"Sorbonne Universit\u00e9, MNHN, CNRS, IRD, Institut de Min\u00e9ralogie, de Physique des Mat\u00e9riaux et de Cosmochimie, IMPMC, 75005 Paris, France","institution_ids":["https://openalex.org/I4210145605","https://openalex.org/I39804081","https://openalex.org/I4210166444","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030852563","display_name":"Marc Vaisset","orcid":null},"institutions":[{"id":"https://openalex.org/I190497903","display_name":"Laboratoire d'Analyse et d'Architecture des Syst\u00e8mes","ror":"https://ror.org/03vcm6439","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I134560555","https://openalex.org/I190497903","https://openalex.org/I196454796","https://openalex.org/I205747304","https://openalex.org/I205747304","https://openalex.org/I4210095849","https://openalex.org/I4210159245","https://openalex.org/I4387153255","https://openalex.org/I4405258862","https://openalex.org/I4405258862","https://openalex.org/I4405258862","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marc Vaisset","raw_affiliation_strings":["LAAS-CNRS, Universit\u00e9 de Toulouse, CNRS, 31400 Toulouse, France"],"affiliations":[{"raw_affiliation_string":"LAAS-CNRS, Universit\u00e9 de Toulouse, CNRS, 31400 Toulouse, France","institution_ids":["https://openalex.org/I17866349","https://openalex.org/I1294671590","https://openalex.org/I190497903"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033642937","display_name":"Jacques Chomilier","orcid":"https://orcid.org/0000-0002-4250-0762"},"institutions":[{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]},{"id":"https://openalex.org/I4210145605","display_name":"Institut de min\u00e9ralogie, de physique des mat\u00e9riaux et de cosmochimie","ror":"https://ror.org/05abgg682","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I2802818602","https://openalex.org/I39804081","https://openalex.org/I4210090127","https://openalex.org/I4210098836","https://openalex.org/I4210123595","https://openalex.org/I4210131494","https://openalex.org/I4210145605","https://openalex.org/I4210166444"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Jacques Chomilier","raw_affiliation_strings":["Sorbonne Universit\u00e9, MNHN, CNRS, IRD, Institut de Min\u00e9ralogie, de Physique des Mat\u00e9riaux et de Cosmochimie, IMPMC, 75005 Paris, France"],"affiliations":[{"raw_affiliation_string":"Sorbonne Universit\u00e9, MNHN, CNRS, IRD, Institut de Min\u00e9ralogie, de Physique des Mat\u00e9riaux et de Cosmochimie, IMPMC, 75005 Paris, France","institution_ids":["https://openalex.org/I4210145605","https://openalex.org/I39804081","https://openalex.org/I4210166444","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073142247","display_name":"Juan Cort\u00e9s","orcid":"https://orcid.org/0000-0002-4660-0306"},"institutions":[{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I190497903","display_name":"Laboratoire d'Analyse et d'Architecture des Syst\u00e8mes","ror":"https://ror.org/03vcm6439","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I134560555","https://openalex.org/I190497903","https://openalex.org/I196454796","https://openalex.org/I205747304","https://openalex.org/I205747304","https://openalex.org/I4210095849","https://openalex.org/I4210159245","https://openalex.org/I4387153255","https://openalex.org/I4405258862","https://openalex.org/I4405258862","https://openalex.org/I4405258862","https://openalex.org/I4405258862"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Juan Cort\u00e9s","raw_affiliation_strings":["LAAS-CNRS, Universit\u00e9 de Toulouse, CNRS, 31400 Toulouse, France"],"affiliations":[{"raw_affiliation_string":"LAAS-CNRS, Universit\u00e9 de Toulouse, CNRS, 31400 Toulouse, France","institution_ids":["https://openalex.org/I17866349","https://openalex.org/I1294671590","https://openalex.org/I190497903"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5033642937","https://openalex.org/A5073142247"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I17866349","https://openalex.org/I190497903","https://openalex.org/I39804081","https://openalex.org/I4210145605","https://openalex.org/I4210166444"],"apc_list":null,"apc_paid":null,"fwci":0.8273,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.71877155,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"58","issue":"11","first_page":"2355","last_page":"2368"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cyclic-peptide","display_name":"Cyclic peptide","score":0.6645551919937134},{"id":"https://openalex.org/keywords/chemical-space","display_name":"Chemical space","score":0.5486980676651001},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5419422388076782},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.5224401354789734},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.44840574264526367},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.42750945687294006},{"id":"https://openalex.org/keywords/constraint","display_name":"Constraint (computer-aided design)","score":0.42087990045547485},{"id":"https://openalex.org/keywords/energy-landscape","display_name":"Energy landscape","score":0.4200911819934845},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3455032706260681},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.33765536546707153},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.31757545471191406},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.298977255821228},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.2742355763912201},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2173842191696167},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09748366475105286}],"concepts":[{"id":"https://openalex.org/C60984968","wikidata":"https://www.wikidata.org/wiki/Q389172","display_name":"Cyclic peptide","level":3,"score":0.6645551919937134},{"id":"https://openalex.org/C99726746","wikidata":"https://www.wikidata.org/wiki/Q906396","display_name":"Chemical space","level":3,"score":0.5486980676651001},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5419422388076782},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.5224401354789734},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.44840574264526367},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.42750945687294006},{"id":"https://openalex.org/C2776036281","wikidata":"https://www.wikidata.org/wiki/Q48769818","display_name":"Constraint (computer-aided design)","level":2,"score":0.42087990045547485},{"id":"https://openalex.org/C119621388","wikidata":"https://www.wikidata.org/wiki/Q5377166","display_name":"Energy landscape","level":2,"score":0.4200911819934845},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3455032706260681},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.33765536546707153},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.31757545471191406},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.298977255821228},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.2742355763912201},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2173842191696167},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09748366475105286},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001696","descriptor_name":"Biomechanical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001696","descriptor_name":"Biomechanical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001696","descriptor_name":"Biomechanical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010456","descriptor_name":"Peptides, Cyclic","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010456","descriptor_name":"Peptides, Cyclic","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010456","descriptor_name":"Peptides, Cyclic","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012910","descriptor_name":"Snake Venoms","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012910","descriptor_name":"Snake Venoms","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012910","descriptor_name":"Snake Venoms","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1021/acs.jcim.8b00375","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.8b00375","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:30299093","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30299093","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:HAL:hal-01893751v1","is_oa":true,"landing_page_url":"https://laas.hal.science/hal-01893751","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Chemical Information and Modeling, 2018, 58 (11), pp.2355-2368. &#x27E8;10.1021/acs.jcim.8b00375&#x27E9;","raw_type":"Journal articles"}],"best_oa_location":{"id":"pmh:oai:HAL:hal-01893751v1","is_oa":true,"landing_page_url":"https://laas.hal.science/hal-01893751","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Chemical Information and Modeling, 2018, 58 (11), pp.2355-2368. &#x27E8;10.1021/acs.jcim.8b00375&#x27E9;","raw_type":"Journal articles"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":77,"referenced_works":["https://openalex.org/W103549531","https://openalex.org/W585670370","https://openalex.org/W614018474","https://openalex.org/W1031578623","https://openalex.org/W1482971402","https://openalex.org/W1546896179","https://openalex.org/W1560270123","https://openalex.org/W1566694705","https://openalex.org/W1860382351","https://openalex.org/W1864112463","https://openalex.org/W1967025687","https://openalex.org/W1967671116","https://openalex.org/W1969609139","https://openalex.org/W1972327767","https://openalex.org/W1977468964","https://openalex.org/W1986602910","https://openalex.org/W1988504916","https://openalex.org/W1994672067","https://openalex.org/W1998470735","https://openalex.org/W2000305302","https://openalex.org/W2000643286","https://openalex.org/W2003915899","https://openalex.org/W2005165136","https://openalex.org/W2006520052","https://openalex.org/W2011301426","https://openalex.org/W2013525448","https://openalex.org/W2013785414","https://openalex.org/W2019476648","https://openalex.org/W2022592354","https://openalex.org/W2023018411","https://openalex.org/W2025880126","https://openalex.org/W2027720677","https://openalex.org/W2030841140","https://openalex.org/W2045683699","https://openalex.org/W2047915087","https://openalex.org/W2050000500","https://openalex.org/W2056169996","https://openalex.org/W2057775160","https://openalex.org/W2061543974","https://openalex.org/W2065097700","https://openalex.org/W2067484689","https://openalex.org/W2075066347","https://openalex.org/W2093221728","https://openalex.org/W2103277002","https://openalex.org/W2106648157","https://openalex.org/W2106741447","https://openalex.org/W2119052082","https://openalex.org/W2122719382","https://openalex.org/W2132629607","https://openalex.org/W2136471260","https://openalex.org/W2137604324","https://openalex.org/W2149186423","https://openalex.org/W2153594105","https://openalex.org/W2155201844","https://openalex.org/W2165779834","https://openalex.org/W2167029191","https://openalex.org/W2213165966","https://openalex.org/W2213640235","https://openalex.org/W2231799974","https://openalex.org/W2290065380","https://openalex.org/W2317417725","https://openalex.org/W2323889349","https://openalex.org/W2327370752","https://openalex.org/W2342488026","https://openalex.org/W2431475031","https://openalex.org/W2509534561","https://openalex.org/W2520613901","https://openalex.org/W2559246072","https://openalex.org/W2583977714","https://openalex.org/W2756870825","https://openalex.org/W2773080986","https://openalex.org/W2790073262","https://openalex.org/W2792512347","https://openalex.org/W2797220725","https://openalex.org/W2949836140","https://openalex.org/W3104897282","https://openalex.org/W3105621768"],"related_works":["https://openalex.org/W2902857455","https://openalex.org/W2161782568","https://openalex.org/W4212982662","https://openalex.org/W4226062292","https://openalex.org/W4281772408","https://openalex.org/W2078293348","https://openalex.org/W4254684673","https://openalex.org/W2023175890","https://openalex.org/W3191713309","https://openalex.org/W2787593686"],"abstract_inverted_index":{"Small":[0],"cyclic":[1,57,133,175],"peptides":[2],"represent":[3],"a":[4,29,42,66,75,127,165],"promising":[5],"class":[6],"of":[7,18,50,54,69,78,84,98,129,132,169,173],"therapeutic":[8],"molecules":[9],"with":[10,89,146],"unique":[11],"chemical":[12],"properties.":[13],"However,":[14],"the":[15,47,51,70,79,82,90,99,112,137,161,170],"poor":[16],"knowledge":[17],"their":[19,23,37],"structural":[20],"characteristics":[21],"makes":[22],"computational":[24],"design":[25],"and":[26,81,93,107,117],"structure":[27],"prediction":[28],"real":[30],"challenge.":[31],"In":[32],"order":[33],"to":[34,87,126,148],"better":[35],"describe":[36],"conformational":[38,71,171],"space,":[39],"we":[40,123],"developed":[41],"method,":[43],"named":[44],"EGSCyP,":[45],"for":[46,111],"exhaustive":[48],"exploration":[49,68],"energy":[52],"landscape":[53],"small":[55,174],"head-to-tail":[56],"peptides.":[58],"The":[59],"method":[60,163],"can":[61,103],"be":[62],"summarized":[63],"by":[64],"(i)":[65],"global":[67],"space":[72,172],"based":[73],"on":[74],"mechanistic":[76],"representation":[77],"peptide":[80],"use":[83],"robotics-based":[85],"algorithms":[86],"deal":[88],"closure":[91],"constraint":[92],"(ii)":[94],"an":[95],"all-atom":[96],"refinement":[97],"obtained":[100],"conformations.":[101],"EGSCyP":[102,162],"handle":[104],"D-form":[105],"residues":[106],"N-methylations.":[108],"Two":[109],"strategies":[110],"side-chains":[113],"placement":[114],"were":[115],"implemented":[116],"compared.":[118],"To":[119],"validate":[120],"our":[121],"approach,":[122],"applied":[124],"it":[125],"set":[128],"three":[130],"variants":[131],"RGDFV":[134],"pentapeptides,":[135],"including":[136],"drug":[138],"candidate":[139],"Cilengitide.":[140],"A":[141],"comparative":[142],"analysis":[143],"was":[144],"made":[145],"respect":[147],"replica":[149],"exchange":[150],"molecular":[151],"dynamics":[152],"simulations":[153],"in":[154],"implicit":[155],"solvent.":[156],"Its":[157],"results":[158],"show":[159],"that":[160],"provides":[164],"very":[166],"complete":[167],"characterization":[168],"pentapeptides.":[176]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
