{"id":"https://openalex.org/W2777877920","doi":"https://doi.org/10.1021/acs.jcim.7b00160","title":"toxFlow: A Web-Based Application for Read-Across Toxicity Prediction Using Omics and Physicochemical Data","display_name":"toxFlow: A Web-Based Application for Read-Across Toxicity Prediction Using Omics and Physicochemical Data","publication_year":2017,"publication_date":"2017-12-27","ids":{"openalex":"https://openalex.org/W2777877920","doi":"https://doi.org/10.1021/acs.jcim.7b00160","mag":"2777877920","pmid":"https://pubmed.ncbi.nlm.nih.gov/29281278"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.7b00160","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.7b00160","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060407366","display_name":"Dimitra\u2010Danai Varsou","orcid":"https://orcid.org/0000-0002-7474-7014"},"institutions":[{"id":"https://openalex.org/I174458059","display_name":"National Technical University of Athens","ror":"https://ror.org/03cx6bg69","country_code":"GR","type":"education","lineage":["https://openalex.org/I174458059"]}],"countries":["GR"],"is_corresponding":true,"raw_author_name":"Dimitra-Danai Varsou","raw_affiliation_strings":["School of Chemical Engineering, National Technical University of Athens, 157 80 Athens, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Chemical Engineering, National Technical University of Athens, 157 80 Athens, Greece","institution_ids":["https://openalex.org/I174458059"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082102542","display_name":"Georgia Tsiliki","orcid":"https://orcid.org/0000-0001-7209-3670"},"institutions":[{"id":"https://openalex.org/I174458059","display_name":"National Technical University of Athens","ror":"https://ror.org/03cx6bg69","country_code":"GR","type":"education","lineage":["https://openalex.org/I174458059"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Georgia Tsiliki","raw_affiliation_strings":["School of Chemical Engineering, National Technical University of Athens, 157 80 Athens, Greece"],"raw_orcid":"https://orcid.org/0000-0001-7209-3670","affiliations":[{"raw_affiliation_string":"School of Chemical Engineering, National Technical University of Athens, 157 80 Athens, Greece","institution_ids":["https://openalex.org/I174458059"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018763133","display_name":"Penny Nymark","orcid":"https://orcid.org/0000-0002-3435-7775"},"institutions":[{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Penny Nymark","raw_affiliation_strings":["Institute of Environmental Medicine, Karolinska Institutet, SE-171 77 Stockholm, Sweden","Misvik Biology Oy, 20520 Turku, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Environmental Medicine, Karolinska Institutet, SE-171 77 Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"Misvik Biology Oy, 20520 Turku, Finland","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055943187","display_name":"Pekka Kohonen","orcid":"https://orcid.org/0000-0002-7845-3611"},"institutions":[{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Pekka Kohonen","raw_affiliation_strings":["Institute of Environmental Medicine, Karolinska Institutet, SE-171 77 Stockholm, Sweden","Misvik Biology Oy, 20520 Turku, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Environmental Medicine, Karolinska Institutet, SE-171 77 Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"Misvik Biology Oy, 20520 Turku, Finland","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047081771","display_name":"Roland Grafstr\u00f6m","orcid":"https://orcid.org/0000-0002-7483-1347"},"institutions":[{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Roland Grafstr\u00f6m","raw_affiliation_strings":["Institute of Environmental Medicine, Karolinska Institutet, SE-171 77 Stockholm, Sweden","Misvik Biology Oy, 20520 Turku, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Environmental Medicine, Karolinska Institutet, SE-171 77 Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"Misvik Biology Oy, 20520 Turku, Finland","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017246181","display_name":"Haralambos Sarimveis","orcid":"https://orcid.org/0000-0002-8607-9965"},"institutions":[{"id":"https://openalex.org/I174458059","display_name":"National Technical University of Athens","ror":"https://ror.org/03cx6bg69","country_code":"GR","type":"education","lineage":["https://openalex.org/I174458059"]}],"countries":["GR"],"is_corresponding":true,"raw_author_name":"Haralambos Sarimveis","raw_affiliation_strings":["School of Chemical Engineering, National Technical University of Athens, 157 80 Athens, Greece"],"raw_orcid":"https://orcid.org/0000-0002-8607-9965","affiliations":[{"raw_affiliation_string":"School of Chemical Engineering, National Technical University of Athens, 157 80 Athens, Greece","institution_ids":["https://openalex.org/I174458059"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5017246181","https://openalex.org/A5060407366"],"corresponding_institution_ids":["https://openalex.org/I174458059"],"apc_list":null,"apc_paid":null,"fwci":2.133,"has_fulltext":false,"cited_by_count":27,"citation_normalized_percentile":{"value":0.8915987,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"58","issue":"3","first_page":"543","last_page":"549"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7822504639625549},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6481552124023438},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6205353736877441},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.43018850684165955},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41889888048171997},{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.41751569509506226},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.352194607257843},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3368244767189026},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.25287777185440063},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21172860264778137},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14642077684402466},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.12863048911094666},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.0883471667766571}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7822504639625549},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6481552124023438},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6205353736877441},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.43018850684165955},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41889888048171997},{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.41751569509506226},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.352194607257843},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3368244767189026},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.25287777185440063},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21172860264778137},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14642077684402466},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.12863048911094666},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0883471667766571}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015386","descriptor_name":"Hazardous Substances","qualifier_ui":"Q000633","qualifier_name":"toxicity","is_major_topic":false},{"descriptor_ui":"D015386","descriptor_name":"Hazardous Substances","qualifier_ui":"Q000633","qualifier_name":"toxicity","is_major_topic":false},{"descriptor_ui":"D015386","descriptor_name":"Hazardous Substances","qualifier_ui":"Q000633","qualifier_name":"toxicity","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018570","descriptor_name":"Risk Assessment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018570","descriptor_name":"Risk Assessment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018570","descriptor_name":"Risk Assessment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053758","descriptor_name":"Nanoparticles","qualifier_ui":"Q000633","qualifier_name":"toxicity","is_major_topic":false},{"descriptor_ui":"D053758","descriptor_name":"Nanoparticles","qualifier_ui":"Q000633","qualifier_name":"toxicity","is_major_topic":false},{"descriptor_ui":"D053758","descriptor_name":"Nanoparticles","qualifier_ui":"Q000633","qualifier_name":"toxicity","is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.7b00160","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.7b00160","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:29281278","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29281278","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G889588881","display_name":null,"funder_award_id":"604134","funder_id":"https://openalex.org/F4320338367","funder_display_name":"FP7 Nanosciences, Nanotechnologies, Materials and new Production Technologies"}],"funders":[{"id":"https://openalex.org/F4320338367","display_name":"FP7 Nanosciences, Nanotechnologies, Materials and new Production Technologies","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1570448133","https://openalex.org/W1879099706","https://openalex.org/W1957147548","https://openalex.org/W2010457001","https://openalex.org/W2010883638","https://openalex.org/W2017827403","https://openalex.org/W2027235754","https://openalex.org/W2030880941","https://openalex.org/W2050482965","https://openalex.org/W2068633547","https://openalex.org/W2072041551","https://openalex.org/W2090507586","https://openalex.org/W2094791588","https://openalex.org/W2116924516","https://openalex.org/W2124001239","https://openalex.org/W2130410032","https://openalex.org/W2142480093","https://openalex.org/W2150342701","https://openalex.org/W2159707944","https://openalex.org/W2173047616","https://openalex.org/W2286211183","https://openalex.org/W2323147899","https://openalex.org/W2463318071","https://openalex.org/W2557567761","https://openalex.org/W2626089494"],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W2397952901","https://openalex.org/W2029380707","https://openalex.org/W4255934811","https://openalex.org/W2465382974","https://openalex.org/W2068608913","https://openalex.org/W2010229520"],"abstract_inverted_index":{"We":[0],"present":[1],"toxFlow,":[2],"a":[3,38,47],"web":[4],"application":[5],"developed":[6],"for":[7,42,63,72,120],"enrichment":[8,31,64],"analysis":[9,20],"of":[10,46,75,87],"omics":[11,28],"data":[12,29],"coupled":[13],"with":[14],"read-across":[15,40],"toxicity":[16,45,73],"prediction.":[17],"A":[18],"sequential":[19],"workflow":[21],"is":[22,124],"suggested":[23,67],"where":[24],"users":[25],"can":[26,60,69,117],"filter":[27],"using":[30],"scores":[32],"and":[33,89,97],"incorporate":[34],"their":[35,91],"findings":[36],"into":[37],"correlation-based":[39],"technique":[41],"predicting":[43],"the":[44,84,113],"substance":[48],"based":[49,93],"on":[50,83,94],"its":[51],"analogs.":[52],"Either":[53],"embedded":[54],"or":[55],"in-house":[56],"gene":[57],"signature":[58],"libraries":[59],"be":[61,70,118],"used":[62,71],"analysis.":[65,122],"The":[66],"approach":[68],"prediction":[74],"diverse":[76],"chemical":[77],"entities;":[78],"however,":[79],"this":[80],"article":[81],"focuses":[82],"multiperspective":[85],"characterization":[86],"nanoparticles":[88],"selects":[90],"neighbors":[92],"both":[95],"physicochemical":[96],"biological":[98],"similarity":[99],"criteria.":[100],"In":[101],"addition,":[102],"visualization":[103],"options":[104],"are":[105],"offered":[106],"to":[107],"interactively":[108],"explore":[109],"correlation":[110],"patterns":[111],"in":[112],"data,":[114],"whereas":[115],"results":[116],"exported":[119],"further":[121],"toxFlow":[123],"accessible":[125],"at":[126],"http://147.102.86.129:3838/toxflow":[127],".":[128]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
