{"id":"https://openalex.org/W2735475201","doi":"https://doi.org/10.1021/acs.jcim.7b00070","title":"Catalytic Cycle of Haloalkane Dehalogenases Toward Unnatural Substrates Explored by Computational Modeling","display_name":"Catalytic Cycle of Haloalkane Dehalogenases Toward Unnatural Substrates Explored by Computational Modeling","publication_year":2017,"publication_date":"2017-07-11","ids":{"openalex":"https://openalex.org/W2735475201","doi":"https://doi.org/10.1021/acs.jcim.7b00070","mag":"2735475201","pmid":"https://pubmed.ncbi.nlm.nih.gov/28696117"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.7b00070","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.7b00070","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025152279","display_name":"S\u00e9rgio M. Marques","orcid":"https://orcid.org/0000-0002-6281-7505"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210102302","display_name":"University Hospital Brno","ror":"https://ror.org/00qq1fp34","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210102302"]},{"id":"https://openalex.org/I4210113999","display_name":"RECETOX","ror":"https://ror.org/032hzqh22","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I21449261","https://openalex.org/I4210113999"]},{"id":"https://openalex.org/I4210136987","display_name":"St. Anne's University Hospital Brno","ror":"https://ror.org/049bjee35","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210136987"]}],"countries":["CZ"],"is_corresponding":true,"raw_author_name":"S\u00e9rgio M. Marques","raw_affiliation_strings":["International\rClinical Research Center, St. Anne\u2019s University Hospital Brno, Pekarska 53, 656 91 Brno, Czech Republic","Loschmidt\rLaboratories, Department of Experimental Biology and Research Centre\rfor Toxic Compounds in the Environment RECETOX, Faculty of Science, Masaryk University, Kamenice 5/A13, 625\r00 Brno, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International\rClinical Research Center, St. Anne\u2019s University Hospital Brno, Pekarska 53, 656 91 Brno, Czech Republic","institution_ids":["https://openalex.org/I4210102302","https://openalex.org/I4210136987"]},{"raw_affiliation_string":"Loschmidt\rLaboratories, Department of Experimental Biology and Research Centre\rfor Toxic Compounds in the Environment RECETOX, Faculty of Science, Masaryk University, Kamenice 5/A13, 625\r00 Brno, Czech Republic","institution_ids":["https://openalex.org/I4210113999","https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086316139","display_name":"Zuzana Dunajova","orcid":"https://orcid.org/0000-0003-4827-912X"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210113999","display_name":"RECETOX","ror":"https://ror.org/032hzqh22","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I21449261","https://openalex.org/I4210113999"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Zuzana Dunajova","raw_affiliation_strings":["Loschmidt\rLaboratories, Department of Experimental Biology and Research Centre\rfor Toxic Compounds in the Environment RECETOX, Faculty of Science, Masaryk University, Kamenice 5/A13, 625\r00 Brno, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Loschmidt\rLaboratories, Department of Experimental Biology and Research Centre\rfor Toxic Compounds in the Environment RECETOX, Faculty of Science, Masaryk University, Kamenice 5/A13, 625\r00 Brno, Czech Republic","institution_ids":["https://openalex.org/I4210113999","https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089102372","display_name":"Zbyn\u011bk Prokop","orcid":"https://orcid.org/0000-0001-9358-4081"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210102302","display_name":"University Hospital Brno","ror":"https://ror.org/00qq1fp34","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210102302"]},{"id":"https://openalex.org/I4210113999","display_name":"RECETOX","ror":"https://ror.org/032hzqh22","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I21449261","https://openalex.org/I4210113999"]},{"id":"https://openalex.org/I4210136987","display_name":"St. Anne's University Hospital Brno","ror":"https://ror.org/049bjee35","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210136987"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Zbynek Prokop","raw_affiliation_strings":["International\rClinical Research Center, St. Anne\u2019s University Hospital Brno, Pekarska 53, 656 91 Brno, Czech Republic","Loschmidt\rLaboratories, Department of Experimental Biology and Research Centre\rfor Toxic Compounds in the Environment RECETOX, Faculty of Science, Masaryk University, Kamenice 5/A13, 625\r00 Brno, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International\rClinical Research Center, St. Anne\u2019s University Hospital Brno, Pekarska 53, 656 91 Brno, Czech Republic","institution_ids":["https://openalex.org/I4210102302","https://openalex.org/I4210136987"]},{"raw_affiliation_string":"Loschmidt\rLaboratories, Department of Experimental Biology and Research Centre\rfor Toxic Compounds in the Environment RECETOX, Faculty of Science, Masaryk University, Kamenice 5/A13, 625\r00 Brno, Czech Republic","institution_ids":["https://openalex.org/I4210113999","https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091455324","display_name":"Radka Chaloupkov\u00e1","orcid":"https://orcid.org/0000-0002-3539-7445"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210102302","display_name":"University Hospital Brno","ror":"https://ror.org/00qq1fp34","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210102302"]},{"id":"https://openalex.org/I4210113999","display_name":"RECETOX","ror":"https://ror.org/032hzqh22","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I21449261","https://openalex.org/I4210113999"]},{"id":"https://openalex.org/I4210136987","display_name":"St. Anne's University Hospital Brno","ror":"https://ror.org/049bjee35","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210136987"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Radka Chaloupkova","raw_affiliation_strings":["International\rClinical Research Center, St. Anne\u2019s University Hospital Brno, Pekarska 53, 656 91 Brno, Czech Republic","Loschmidt\rLaboratories, Department of Experimental Biology and Research Centre\rfor Toxic Compounds in the Environment RECETOX, Faculty of Science, Masaryk University, Kamenice 5/A13, 625\r00 Brno, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International\rClinical Research Center, St. Anne\u2019s University Hospital Brno, Pekarska 53, 656 91 Brno, Czech Republic","institution_ids":["https://openalex.org/I4210102302","https://openalex.org/I4210136987"]},{"raw_affiliation_string":"Loschmidt\rLaboratories, Department of Experimental Biology and Research Centre\rfor Toxic Compounds in the Environment RECETOX, Faculty of Science, Masaryk University, Kamenice 5/A13, 625\r00 Brno, Czech Republic","institution_ids":["https://openalex.org/I4210113999","https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000513864","display_name":"Jan Brezovsk\u00fd","orcid":"https://orcid.org/0000-0001-9677-5078"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210102302","display_name":"University Hospital Brno","ror":"https://ror.org/00qq1fp34","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210102302"]},{"id":"https://openalex.org/I4210113999","display_name":"RECETOX","ror":"https://ror.org/032hzqh22","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I21449261","https://openalex.org/I4210113999"]},{"id":"https://openalex.org/I4210136987","display_name":"St. Anne's University Hospital Brno","ror":"https://ror.org/049bjee35","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210136987"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Jan Brezovsky","raw_affiliation_strings":["International\rClinical Research Center, St. Anne\u2019s University Hospital Brno, Pekarska 53, 656 91 Brno, Czech Republic","Loschmidt\rLaboratories, Department of Experimental Biology and Research Centre\rfor Toxic Compounds in the Environment RECETOX, Faculty of Science, Masaryk University, Kamenice 5/A13, 625\r00 Brno, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International\rClinical Research Center, St. Anne\u2019s University Hospital Brno, Pekarska 53, 656 91 Brno, Czech Republic","institution_ids":["https://openalex.org/I4210102302","https://openalex.org/I4210136987"]},{"raw_affiliation_string":"Loschmidt\rLaboratories, Department of Experimental Biology and Research Centre\rfor Toxic Compounds in the Environment RECETOX, Faculty of Science, Masaryk University, Kamenice 5/A13, 625\r00 Brno, Czech Republic","institution_ids":["https://openalex.org/I4210113999","https://openalex.org/I21449261"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040585952","display_name":"Ji\u0159\u0131\u0301 Damborsk\u00fd","orcid":"https://orcid.org/0000-0002-7848-8216"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210102302","display_name":"University Hospital Brno","ror":"https://ror.org/00qq1fp34","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210102302"]},{"id":"https://openalex.org/I4210113999","display_name":"RECETOX","ror":"https://ror.org/032hzqh22","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I21449261","https://openalex.org/I4210113999"]},{"id":"https://openalex.org/I4210136987","display_name":"St. Anne's University Hospital Brno","ror":"https://ror.org/049bjee35","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210136987"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Jiri Damborsky","raw_affiliation_strings":["International\rClinical Research Center, St. Anne\u2019s University Hospital Brno, Pekarska 53, 656 91 Brno, Czech Republic","Loschmidt\rLaboratories, Department of Experimental Biology and Research Centre\rfor Toxic Compounds in the Environment RECETOX, Faculty of Science, Masaryk University, Kamenice 5/A13, 625\r00 Brno, Czech Republic"],"raw_orcid":"https://orcid.org/0000-0002-7848-8216","affiliations":[{"raw_affiliation_string":"International\rClinical Research Center, St. Anne\u2019s University Hospital Brno, Pekarska 53, 656 91 Brno, Czech Republic","institution_ids":["https://openalex.org/I4210102302","https://openalex.org/I4210136987"]},{"raw_affiliation_string":"Loschmidt\rLaboratories, Department of Experimental Biology and Research Centre\rfor Toxic Compounds in the Environment RECETOX, Faculty of Science, Masaryk University, Kamenice 5/A13, 625\r00 Brno, Czech Republic","institution_ids":["https://openalex.org/I4210113999","https://openalex.org/I21449261"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5025152279"],"corresponding_institution_ids":["https://openalex.org/I21449261","https://openalex.org/I4210102302","https://openalex.org/I4210113999","https://openalex.org/I4210136987"],"apc_list":null,"apc_paid":null,"fwci":1.2354,"has_fulltext":false,"cited_by_count":29,"citation_normalized_percentile":{"value":0.78999151,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"57","issue":"8","first_page":"1970","last_page":"1989"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.7388525605201721},{"id":"https://openalex.org/keywords/active-site","display_name":"Active site","score":0.6504004597663879},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.5555896759033203},{"id":"https://openalex.org/keywords/biocatalysis","display_name":"Biocatalysis","score":0.5475755929946899},{"id":"https://openalex.org/keywords/stereochemistry","display_name":"Stereochemistry","score":0.5272946357727051},{"id":"https://openalex.org/keywords/catalytic-cycle","display_name":"Catalytic cycle","score":0.5210951566696167},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.4544040560722351},{"id":"https://openalex.org/keywords/directed-evolution","display_name":"Directed evolution","score":0.4359022378921509},{"id":"https://openalex.org/keywords/enzyme-kinetics","display_name":"Enzyme kinetics","score":0.4238021969795227},{"id":"https://openalex.org/keywords/mutant","display_name":"Mutant","score":0.2835937738418579},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2703765630722046},{"id":"https://openalex.org/keywords/catalysis","display_name":"Catalysis","score":0.2620934247970581},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.2185450792312622},{"id":"https://openalex.org/keywords/reaction-mechanism","display_name":"Reaction mechanism","score":0.21368321776390076},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09471496939659119}],"concepts":[{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.7388525605201721},{"id":"https://openalex.org/C41183919","wikidata":"https://www.wikidata.org/wiki/Q423026","display_name":"Active site","level":3,"score":0.6504004597663879},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.5555896759033203},{"id":"https://openalex.org/C191503008","wikidata":"https://www.wikidata.org/wiki/Q16007026","display_name":"Biocatalysis","level":4,"score":0.5475755929946899},{"id":"https://openalex.org/C71240020","wikidata":"https://www.wikidata.org/wiki/Q186011","display_name":"Stereochemistry","level":1,"score":0.5272946357727051},{"id":"https://openalex.org/C63338738","wikidata":"https://www.wikidata.org/wiki/Q287862","display_name":"Catalytic cycle","level":3,"score":0.5210951566696167},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.4544040560722351},{"id":"https://openalex.org/C9418097","wikidata":"https://www.wikidata.org/wiki/Q440681","display_name":"Directed evolution","level":4,"score":0.4359022378921509},{"id":"https://openalex.org/C56856141","wikidata":"https://www.wikidata.org/wiki/Q883112","display_name":"Enzyme kinetics","level":4,"score":0.4238021969795227},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.2835937738418579},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2703765630722046},{"id":"https://openalex.org/C161790260","wikidata":"https://www.wikidata.org/wiki/Q82264","display_name":"Catalysis","level":2,"score":0.2620934247970581},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.2185450792312622},{"id":"https://openalex.org/C65024703","wikidata":"https://www.wikidata.org/wiki/Q373406","display_name":"Reaction mechanism","level":3,"score":0.21368321776390076},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09471496939659119}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006867","descriptor_name":"Hydrolases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006867","descriptor_name":"Hydrolases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006867","descriptor_name":"Hydrolases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006867","descriptor_name":"Hydrolases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006867","descriptor_name":"Hydrolases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006867","descriptor_name":"Hydrolases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006867","descriptor_name":"Hydrolases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006867","descriptor_name":"Hydrolases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006867","descriptor_name":"Hydrolases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012240","descriptor_name":"Rhodococcus","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D012240","descriptor_name":"Rhodococcus","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D012240","descriptor_name":"Rhodococcus","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020134","descriptor_name":"Catalytic Domain","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020134","descriptor_name":"Catalytic Domain","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020134","descriptor_name":"Catalytic Domain","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055162","descriptor_name":"Biocatalysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055162","descriptor_name":"Biocatalysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055162","descriptor_name":"Biocatalysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.7b00070","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.7b00070","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:28696117","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28696117","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Affordable and clean energy","score":0.6899999976158142,"id":"https://metadata.un.org/sdg/7"}],"awards":[{"id":"https://openalex.org/G2853685878","display_name":null,"funder_award_id":"LO1214","funder_id":"https://openalex.org/F4320321005","funder_display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy"},{"id":"https://openalex.org/G3680297793","display_name":null,"funder_award_id":"LQ1605","funder_id":"https://openalex.org/F4320321005","funder_display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy"},{"id":"https://openalex.org/G535278291","display_name":null,"funder_award_id":"4SGA8519","funder_id":"https://openalex.org/F4320333065","funder_display_name":"Seventh Framework Programme"},{"id":"https://openalex.org/G6806915749","display_name":null,"funder_award_id":"P503/12/0572","funder_id":"https://openalex.org/F4320321006","funder_display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky"},{"id":"https://openalex.org/G6978896345","display_name":null,"funder_award_id":"291782","funder_id":"https://openalex.org/F4320333065","funder_display_name":"Seventh Framework Programme"},{"id":"https://openalex.org/G8893427484","display_name":null,"funder_award_id":"LH14027","funder_id":"https://openalex.org/F4320321005","funder_display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy"}],"funders":[{"id":"https://openalex.org/F4320321005","display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy","ror":"https://ror.org/037n8p820"},{"id":"https://openalex.org/F4320321006","display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky","ror":"https://ror.org/01pv73b02"},{"id":"https://openalex.org/F4320333065","display_name":"Seventh Framework Programme","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":83,"referenced_works":["https://openalex.org/W1540384848","https://openalex.org/W1760074260","https://openalex.org/W1963691142","https://openalex.org/W1968984443","https://openalex.org/W1970264454","https://openalex.org/W1971858964","https://openalex.org/W1975734016","https://openalex.org/W1976499671","https://openalex.org/W1981225934","https://openalex.org/W1987706462","https://openalex.org/W1988636074","https://openalex.org/W1989096170","https://openalex.org/W1992899488","https://openalex.org/W1997082598","https://openalex.org/W2004822259","https://openalex.org/W2005126631","https://openalex.org/W2017493899","https://openalex.org/W2018931974","https://openalex.org/W2027790571","https://openalex.org/W2027916840","https://openalex.org/W2028046413","https://openalex.org/W2029667189","https://openalex.org/W2030623529","https://openalex.org/W2030971064","https://openalex.org/W2031130609","https://openalex.org/W2042924462","https://openalex.org/W2044066756","https://openalex.org/W2056211855","https://openalex.org/W2056972503","https://openalex.org/W2058493522","https://openalex.org/W2065371116","https://openalex.org/W2066690664","https://openalex.org/W2066883573","https://openalex.org/W2067174909","https://openalex.org/W2069197202","https://openalex.org/W2069363866","https://openalex.org/W2076189525","https://openalex.org/W2078304042","https://openalex.org/W2083717642","https://openalex.org/W2086007235","https://openalex.org/W2093407764","https://openalex.org/W2095677518","https://openalex.org/W2095719702","https://openalex.org/W2105103540","https://openalex.org/W2105668062","https://openalex.org/W2106140689","https://openalex.org/W2108772880","https://openalex.org/W2114239896","https://openalex.org/W2116228466","https://openalex.org/W2117458899","https://openalex.org/W2118527243","https://openalex.org/W2118714546","https://openalex.org/W2121864025","https://openalex.org/W2123906667","https://openalex.org/W2131223032","https://openalex.org/W2131701775","https://openalex.org/W2134441699","https://openalex.org/W2135101451","https://openalex.org/W2137825366","https://openalex.org/W2138992251","https://openalex.org/W2139542388","https://openalex.org/W2144288821","https://openalex.org/W2148541186","https://openalex.org/W2153775647","https://openalex.org/W2155758860","https://openalex.org/W2159616630","https://openalex.org/W2161104561","https://openalex.org/W2161172802","https://openalex.org/W2163961191","https://openalex.org/W2167029191","https://openalex.org/W2168708922","https://openalex.org/W2317270205","https://openalex.org/W2327566542","https://openalex.org/W2332712348","https://openalex.org/W2470084196","https://openalex.org/W2500338387","https://openalex.org/W2507066966","https://openalex.org/W2510867035","https://openalex.org/W2522579131","https://openalex.org/W2600773364","https://openalex.org/W2601699215","https://openalex.org/W3105643282","https://openalex.org/W3178334431"],"related_works":["https://openalex.org/W2966878560","https://openalex.org/W2078293238","https://openalex.org/W2995100676","https://openalex.org/W4248044179","https://openalex.org/W2139205357","https://openalex.org/W2584678630","https://openalex.org/W2974891919","https://openalex.org/W2013753619","https://openalex.org/W4249312590","https://openalex.org/W2024191736"],"abstract_inverted_index":{"2":[0],"reaction.":[1],"C176Y":[2,36],"and":[3,42,92],"V245F":[4],"were":[5],"identified":[6],"as":[7],"the":[8,20,27,35,46,50,63,82,99],"key":[9],"mutations":[10],"responsible":[11],"for":[12],"most":[13],"of":[14,19,40,45,62,72,85,89,101],"those":[15],"improvements.":[16],"The":[17],"release":[18],"alcohol":[21],"product":[22],"was":[23],"found":[24],"to":[25,34,80,95],"be":[26],"rate-limiting":[28],"step":[29],"in":[30,98],"DhaA31":[31,41],"primarily":[32],"due":[33],"mutation.":[37],"Mutational":[38],"dissection":[39],"kinetic":[43],"analysis":[44],"intermediate":[47],"mutants":[48],"confirmed":[49],"theoretical":[51],"observations.":[52],"Overall,":[53],"our":[54],"comprehensive":[55],"computational":[56],"approach":[57,77],"has":[58],"unveiled":[59],"mechanistic":[60],"details":[61],"catalytic":[64],"cycle":[65],"which":[66],"will":[67],"enable":[68],"a":[69,86],"balanced":[70],"design":[71],"more":[73],"efficient":[74],"enzymes.":[75],"This":[76],"is":[78],"applicable":[79],"deepen":[81],"biochemical":[83],"knowledge":[84],"large":[87],"number":[88],"other":[90],"systems":[91],"may":[93],"contribute":[94],"robust":[96],"strategies":[97],"development":[100],"new":[102],"biocatalysts.":[103]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":2}],"updated_date":"2026-04-28T14:05:53.105641","created_date":"2025-10-10T00:00:00"}
