{"id":"https://openalex.org/W7154732257","doi":"https://doi.org/10.1021/acs.jcim.6c00070","title":"CapsBAM-ac4C: An Attention Mechanism-Enhanced Capsule Networks for RNA N4-Acetylcytidine Site Prediction","display_name":"CapsBAM-ac4C: An Attention Mechanism-Enhanced Capsule Networks for RNA N4-Acetylcytidine Site Prediction","publication_year":2026,"publication_date":"2026-04-17","ids":{"openalex":"https://openalex.org/W7154732257","doi":"https://doi.org/10.1021/acs.jcim.6c00070","pmid":"https://pubmed.ncbi.nlm.nih.gov/41994989"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.6c00070","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.6c00070","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5133832352","display_name":"Shengwei Shi","orcid":null},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shengwei Shi","raw_affiliation_strings":["Anhui Agricultural University","School of Information and Artificial Intelligence"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anhui Agricultural University","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Information and Artificial Intelligence","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038823196","display_name":"Yuhan Zhu","orcid":"https://orcid.org/0000-0002-7840-9696"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuhan Zhu","raw_affiliation_strings":["Anhui Agricultural University","School of Information and Artificial Intelligence"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anhui Agricultural University","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Information and Artificial Intelligence","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100377411","display_name":"Hailong Zhang","orcid":"https://orcid.org/0000-0002-8951-7094"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haoxuan Zhang","raw_affiliation_strings":["Anhui Agricultural University","School of Information and Artificial Intelligence"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anhui Agricultural University","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Information and Artificial Intelligence","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5133843441","display_name":"Menghan Hu","orcid":null},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Menghan Hu","raw_affiliation_strings":["Anhui Agricultural University","School of Information and Artificial Intelligence"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anhui Agricultural University","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Information and Artificial Intelligence","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5133864588","display_name":"Wencan Ren","orcid":null},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wencan Ren","raw_affiliation_strings":["Anhui Agricultural University","School of Information and Artificial Intelligence"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anhui Agricultural University","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Information and Artificial Intelligence","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5132660216","display_name":"Weixue Lu","orcid":null},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weixue Lu","raw_affiliation_strings":["Anhui Agricultural University","School of Information and Artificial Intelligence"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anhui Agricultural University","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Information and Artificial Intelligence","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084858860","display_name":"Xiaolei Zhu","orcid":"https://orcid.org/0000-0002-1967-2806"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaolei Zhu","raw_affiliation_strings":["Anhui Agricultural University","School of Information and Artificial Intelligence"],"raw_orcid":"https://orcid.org/0000-0002-1967-2806","affiliations":[{"raw_affiliation_string":"Anhui Agricultural University","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Information and Artificial Intelligence","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I140221134"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.41102605,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"66","issue":"9","first_page":"5393","last_page":"5407"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.5612000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.5612000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.3165000081062317,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.019899999722838402,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.5745000243186951},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5555999875068665},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5151000022888184},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4797999858856201},{"id":"https://openalex.org/keywords/dimension","display_name":"Dimension (graph theory)","score":0.45969998836517334},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.4424999952316284},{"id":"https://openalex.org/keywords/position","display_name":"Position (finance)","score":0.42719998955726624},{"id":"https://openalex.org/keywords/encoding","display_name":"Encoding (memory)","score":0.4092999994754791},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.40220001339912415}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.661899983882904},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.5745000243186951},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5555999875068665},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5489000082015991},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5151000022888184},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4797999858856201},{"id":"https://openalex.org/C33676613","wikidata":"https://www.wikidata.org/wiki/Q13415176","display_name":"Dimension (graph theory)","level":2,"score":0.45969998836517334},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4519999921321869},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.4424999952316284},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.43880000710487366},{"id":"https://openalex.org/C198082294","wikidata":"https://www.wikidata.org/wiki/Q3399648","display_name":"Position (finance)","level":2,"score":0.42719998955726624},{"id":"https://openalex.org/C125411270","wikidata":"https://www.wikidata.org/wiki/Q18653","display_name":"Encoding (memory)","level":2,"score":0.4092999994754791},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.40220001339912415},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.38359999656677246},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.3767000138759613},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.37400001287460327},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.37299999594688416},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.3727000057697296},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3700000047683716},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.3677999973297119},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.3540000021457672},{"id":"https://openalex.org/C2164484","wikidata":"https://www.wikidata.org/wiki/Q5170150","display_name":"Core (optical fiber)","level":2,"score":0.33070001006126404},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.2833999991416931},{"id":"https://openalex.org/C2779227376","wikidata":"https://www.wikidata.org/wiki/Q6505497","display_name":"Layer (electronics)","level":2,"score":0.2782999873161316},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.2777999937534332},{"id":"https://openalex.org/C93959086","wikidata":"https://www.wikidata.org/wiki/Q6888345","display_name":"Model selection","level":2,"score":0.259799987077713},{"id":"https://openalex.org/C70518039","wikidata":"https://www.wikidata.org/wiki/Q16000077","display_name":"Dimensionality reduction","level":2,"score":0.2597000002861023},{"id":"https://openalex.org/C185581394","wikidata":"https://www.wikidata.org/wiki/Q145911","display_name":"Base pair","level":3,"score":0.25459998846054077}],"mesh":[{"descriptor_ui":"D003562","descriptor_name":"Cytidine","qualifier_ui":"Q000031","qualifier_name":"analogs & derivatives","is_major_topic":true},{"descriptor_ui":"D003562","descriptor_name":"Cytidine","qualifier_ui":"Q000031","qualifier_name":"analogs & derivatives","is_major_topic":true},{"descriptor_ui":"D003562","descriptor_name":"Cytidine","qualifier_ui":"Q000031","qualifier_name":"analogs & derivatives","is_major_topic":true},{"descriptor_ui":"D003562","descriptor_name":"Cytidine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D003562","descriptor_name":"Cytidine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D003562","descriptor_name":"Cytidine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D003562","descriptor_name":"Cytidine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D003562","descriptor_name":"Cytidine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D003562","descriptor_name":"Cytidine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.6c00070","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.6c00070","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:41994989","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41994989","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5739163160324097,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G7590728514","display_name":null,"funder_award_id":"2023AH050998","funder_id":"https://openalex.org/F4320335406","funder_display_name":"University Natural Science Research Project of Anhui Province"}],"funders":[{"id":"https://openalex.org/F4320335406","display_name":"University Natural Science Research Project of Anhui Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":48,"referenced_works":["https://openalex.org/W2080674964","https://openalex.org/W2156125289","https://openalex.org/W2889131840","https://openalex.org/W2893677905","https://openalex.org/W2901932654","https://openalex.org/W2915489297","https://openalex.org/W2965635599","https://openalex.org/W3012521674","https://openalex.org/W3035833199","https://openalex.org/W3108267036","https://openalex.org/W3137227889","https://openalex.org/W3158703856","https://openalex.org/W3164115955","https://openalex.org/W3195747191","https://openalex.org/W3198168376","https://openalex.org/W3213133098","https://openalex.org/W4282922219","https://openalex.org/W4283754853","https://openalex.org/W4285041302","https://openalex.org/W4293569783","https://openalex.org/W4303699808","https://openalex.org/W4310295249","https://openalex.org/W4310675782","https://openalex.org/W4381429239","https://openalex.org/W4382631374","https://openalex.org/W4385997203","https://openalex.org/W4386747390","https://openalex.org/W4389001063","https://openalex.org/W4389378102","https://openalex.org/W4389410663","https://openalex.org/W4390731249","https://openalex.org/W4390908043","https://openalex.org/W4392162444","https://openalex.org/W4395110469","https://openalex.org/W4399704221","https://openalex.org/W4400212876","https://openalex.org/W4400590296","https://openalex.org/W4402659569","https://openalex.org/W4403480073","https://openalex.org/W4404112609","https://openalex.org/W4406902413","https://openalex.org/W4407064199","https://openalex.org/W4408016656","https://openalex.org/W4409396983","https://openalex.org/W4411059437","https://openalex.org/W4411886875","https://openalex.org/W4414156182","https://openalex.org/W4415733045"],"related_works":[],"abstract_inverted_index":{"N4-acetylcytidine":[0],"(ac4C)":[1],"modification":[2],"is":[3],"crucial":[4],"for":[5,197,233],"gene":[6],"expression":[7],"regulation.":[8],"However,":[9],"existing":[10],"prediction":[11],"methods":[12,176],"are":[13],"limited":[14],"by":[15],"one-dimensional":[16],"sequence":[17,40,99,154],"encodings,":[18],"which":[19,87,229],"inadequately":[20],"capture":[21],"the":[22,54,108,112,124,139,204,215],"higher-order":[23],"spatial":[24,143],"and":[25,59,80,121,134,142,159,166,184,194,210],"global":[26,90],"statistical":[27],"features":[28,133,209],"of":[29,56,107,114,156,207,217],"RNA.":[30],"Moreover,":[31],"while":[32,92],"capsule":[33,44,125,211],"networks":[34],"have":[35],"shown":[36],"promise":[37],"in":[38,98,111,214],"biological":[39],"analysis,":[41],"their":[42],"primary":[43],"layer":[45],"lacks":[46],"an":[47],"adaptive":[48],"feature":[49,140],"selection":[50],"capability,":[51],"leading":[52],"to":[53,78],"introduction":[55],"redundant":[57],"information":[58],"thus":[60],"compromising":[61],"model":[62,71,109],"performance.":[63],"To":[64],"this":[65],"end,":[66],"we":[67,223],"propose":[68],"CapsBAM-ac4C.":[69],"The":[70,104],"first":[72],"utilizes":[73],"Chaos":[74],"Game":[75],"Representation":[76],"(CGR)":[77],"encode":[79],"normalize":[81],"RNA":[82,218],"sequences":[83],"into":[84,123],"two-dimensional":[85],"images,":[86],"effectively":[88],"represent":[89],"structures":[91],"eliminating":[93],"scale":[94],"shifts":[95],"from":[96,137],"variations":[97],"length":[100],"or":[101],"base":[102],"composition.":[103],"core":[105],"innovation":[106],"lies":[110],"integration":[113],"a":[115,191,225],"dual":[116],"capsule-level":[117],"attention":[118,212],"mechanism":[119,129],"(CapsChannel":[120],"CapsSpatial)":[122],"network":[126],"architecture.":[127],"This":[128,186],"adaptively":[130],"enhances":[131],"key":[132,179],"suppresses":[135],"noise":[136],"both":[138],"dimension":[141],"position":[144],"perspectives.":[145],"Systematic":[146],"evaluations":[147],"on":[148],"three":[149],"independent":[150],"test":[151],"sets,":[152],"covering":[153],"lengths":[155],"201":[157],"nt":[158,161],"415":[160],"as":[162,164],"well":[163],"balanced":[165],"imbalanced":[167],"sample":[168],"distributions,":[169],"demonstrate":[170],"that":[171],"CapsBAM-ac4C":[172],"significantly":[173],"outperforms":[174],"state-of-the-art":[175],"across":[177],"multiple":[178],"metrics,":[180],"including":[181],"ACC,":[182],"MCC,":[183],"AUROC.":[185],"study":[187],"not":[188],"only":[189],"provides":[190],"highly":[192],"accurate":[193],"robust":[195],"tool":[196],"ac4C":[198],"site":[199],"identification":[200],"but":[201],"also":[202],"highlights":[203],"immense":[205],"potential":[206],"graph-based":[208],"mechanisms":[213],"analysis":[216],"modifications.":[219],"For":[220],"user":[221],"convenience,":[222],"developed":[224],"user-friendly":[226],"web":[227],"server,":[228],"can":[230],"be":[231],"accessed":[232],"free":[234],"at":[235],"http://zhulab.org.cn/CapsBAM-ac4C/.":[236]},"counts_by_year":[],"updated_date":"2026-07-16T13:24:37.021932","created_date":"2026-04-18T00:00:00"}
