{"id":"https://openalex.org/W2558889343","doi":"https://doi.org/10.1021/acs.jcim.6b00407","title":"MIB: Metal Ion-Binding Site Prediction and Docking Server","display_name":"MIB: Metal Ion-Binding Site Prediction and Docking Server","publication_year":2016,"publication_date":"2016-11-29","ids":{"openalex":"https://openalex.org/W2558889343","doi":"https://doi.org/10.1021/acs.jcim.6b00407","mag":"2558889343","pmid":"https://pubmed.ncbi.nlm.nih.gov/27976886"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.6b00407","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.6b00407","pdf_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.6b00407?ref=article_openPDF","source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.6b00407?ref=article_openPDF","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079418316","display_name":"Yu\u2010Feng Lin","orcid":"https://orcid.org/0000-0002-4350-7755"},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yu-Feng Lin","raw_affiliation_strings":["Institute of Bioinformatics\rand Systems Biology, National Chiao Tung University, Hsinchu, 30050 Taiwan","Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu, 30050, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics\rand Systems Biology, National Chiao Tung University, Hsinchu, 30050 Taiwan","institution_ids":["https://openalex.org/I148366613"]},{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu, 30050, Taiwan","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113791802","display_name":"Chih-Wen Cheng","orcid":null},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chih-Wen Cheng","raw_affiliation_strings":["Institute of Bioinformatics\rand Systems Biology, National Chiao Tung University, Hsinchu, 30050 Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics\rand Systems Biology, National Chiao Tung University, Hsinchu, 30050 Taiwan","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013600594","display_name":"Shih Chung-Shiuan","orcid":null},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chung-Shiuan Shih","raw_affiliation_strings":["Institute of Bioinformatics\rand Systems Biology, National Chiao Tung University, Hsinchu, 30050 Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics\rand Systems Biology, National Chiao Tung University, Hsinchu, 30050 Taiwan","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102145100","display_name":"Jenn\u2010Kang Hwang","orcid":null},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Jenn-Kang Hwang","raw_affiliation_strings":["Institute of Bioinformatics\rand Systems Biology, National Chiao Tung University, Hsinchu, 30050 Taiwan","Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu, 30050, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics\rand Systems Biology, National Chiao Tung University, Hsinchu, 30050 Taiwan","institution_ids":["https://openalex.org/I148366613"]},{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu, 30050, Taiwan","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112234225","display_name":"Chin-Sheng Yu","orcid":null},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]},{"id":"https://openalex.org/I184693016","display_name":"China Medical University","ror":"https://ror.org/00v408z34","country_code":"TW","type":"education","lineage":["https://openalex.org/I184693016"]},{"id":"https://openalex.org/I4880106","display_name":"Feng Chia University","ror":"https://ror.org/05vhczg54","country_code":"TW","type":"education","lineage":["https://openalex.org/I4880106"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chin-Sheng Yu","raw_affiliation_strings":["Graduate Institute of Basic Medical Science, China Medical University, Taichung 40402, Taiwan","Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu, 30050 Taiwan","\u2021 Department of Information Engineering and Computer Science and \u00a7 Master\u2019s Program in Biomedical Informatics and Biomedical Engineering, Feng Chia University, Taichung 40724, Taiwan","National Yang Ming Chiao Tung University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate Institute of Basic Medical Science, China Medical University, Taichung 40402, Taiwan","institution_ids":["https://openalex.org/I184693016"]},{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu, 30050 Taiwan","institution_ids":["https://openalex.org/I148366613"]},{"raw_affiliation_string":"\u2021 Department of Information Engineering and Computer Science and \u00a7 Master\u2019s Program in Biomedical Informatics and Biomedical Engineering, Feng Chia University, Taichung 40724, Taiwan","institution_ids":["https://openalex.org/I4880106"]},{"raw_affiliation_string":"National Yang Ming Chiao Tung University","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065352854","display_name":"Chih\u2010Hao Lu","orcid":"https://orcid.org/0000-0002-8363-6244"},"institutions":[{"id":"https://openalex.org/I184693016","display_name":"China Medical University","ror":"https://ror.org/00v408z34","country_code":"TW","type":"education","lineage":["https://openalex.org/I184693016"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Chih-Hao Lu","raw_affiliation_strings":["Graduate\rInstitute of Basic Medical Science, China Medical University, Taichung 40402, Taiwan","Graduate Institute of Basic Medical Science, China Medical University, Taichung 40402, Taiwan"],"raw_orcid":"https://orcid.org/0000-0002-8363-6244","affiliations":[{"raw_affiliation_string":"Graduate\rInstitute of Basic Medical Science, China Medical University, Taichung 40402, Taiwan","institution_ids":["https://openalex.org/I184693016"]},{"raw_affiliation_string":"Graduate Institute of Basic Medical Science, China Medical University, Taichung 40402, Taiwan","institution_ids":["https://openalex.org/I184693016"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5065352854"],"corresponding_institution_ids":["https://openalex.org/I184693016"],"apc_list":null,"apc_paid":null,"fwci":6.3213,"has_fulltext":true,"cited_by_count":300,"citation_normalized_percentile":{"value":0.96688883,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"56","issue":"12","first_page":"2287","last_page":"2291"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/template","display_name":"Template","score":0.8732364177703857},{"id":"https://openalex.org/keywords/metal","display_name":"Metal","score":0.6216286420822144},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.6099144816398621},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.5639207363128662},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.5205293893814087},{"id":"https://openalex.org/keywords/metal-ions-in-aqueous-solution","display_name":"Metal ions in aqueous solution","score":0.46399232745170593},{"id":"https://openalex.org/keywords/crystallography","display_name":"Crystallography","score":0.4601076543331146},{"id":"https://openalex.org/keywords/structural-bioinformatics","display_name":"Structural bioinformatics","score":0.45655813813209534},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4492930769920349},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.4441138505935669},{"id":"https://openalex.org/keywords/ion","display_name":"Ion","score":0.44080492854118347},{"id":"https://openalex.org/keywords/structural-similarity","display_name":"Structural similarity","score":0.43118488788604736},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.2548755407333374},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.2475910186767578},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.15221157670021057}],"concepts":[{"id":"https://openalex.org/C82714645","wikidata":"https://www.wikidata.org/wiki/Q438331","display_name":"Template","level":2,"score":0.8732364177703857},{"id":"https://openalex.org/C544153396","wikidata":"https://www.wikidata.org/wiki/Q11426","display_name":"Metal","level":2,"score":0.6216286420822144},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.6099144816398621},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.5639207363128662},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.5205293893814087},{"id":"https://openalex.org/C199164860","wikidata":"https://www.wikidata.org/wiki/Q6822745","display_name":"Metal ions in aqueous solution","level":3,"score":0.46399232745170593},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.4601076543331146},{"id":"https://openalex.org/C69131567","wikidata":"https://www.wikidata.org/wiki/Q2068215","display_name":"Structural bioinformatics","level":3,"score":0.45655813813209534},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4492930769920349},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.4441138505935669},{"id":"https://openalex.org/C145148216","wikidata":"https://www.wikidata.org/wiki/Q36496","display_name":"Ion","level":2,"score":0.44080492854118347},{"id":"https://openalex.org/C139489369","wikidata":"https://www.wikidata.org/wiki/Q770846","display_name":"Structural similarity","level":2,"score":0.43118488788604736},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.2548755407333374},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.2475910186767578},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.15221157670021057},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002412","descriptor_name":"Cations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002412","descriptor_name":"Cations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002412","descriptor_name":"Cations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008670","descriptor_name":"Metals","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008670","descriptor_name":"Metals","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008670","descriptor_name":"Metals","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.6b00407","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.6b00407","pdf_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.6b00407?ref=article_openPDF","source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:27976886","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27976886","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":{"id":"doi:10.1021/acs.jcim.6b00407","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.6b00407","pdf_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.6b00407?ref=article_openPDF","source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1048899084","display_name":null,"funder_award_id":"105-2113-M-009-017-","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"},{"id":"https://openalex.org/G6044247453","display_name":null,"funder_award_id":"99-2113-M-039-002-MY2","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"}],"funders":[{"id":"https://openalex.org/F4320322795","display_name":"Ministry of Science and Technology, Taiwan","ror":"https://ror.org/02kv4zf79"},{"id":"https://openalex.org/F4320323443","display_name":"National Chiao Tung University","ror":"https://ror.org/00se2k293"},{"id":"https://openalex.org/F4320324301","display_name":"China Medical University","ror":"https://ror.org/032d4f246"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2558889343.pdf","grobid_xml":"https://content.openalex.org/works/W2558889343.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1508885706","https://openalex.org/W1983259744","https://openalex.org/W1992176190","https://openalex.org/W2005132438","https://openalex.org/W2011920501","https://openalex.org/W2022871655","https://openalex.org/W2026205530","https://openalex.org/W2026993557","https://openalex.org/W2027448987","https://openalex.org/W2029263948","https://openalex.org/W2059656024","https://openalex.org/W2093352801","https://openalex.org/W2130479394","https://openalex.org/W2139373949","https://openalex.org/W2140538197","https://openalex.org/W2143210482","https://openalex.org/W2165677969","https://openalex.org/W2171559274","https://openalex.org/W2409688657"],"related_works":["https://openalex.org/W2163614321","https://openalex.org/W2607853144","https://openalex.org/W2014499409","https://openalex.org/W2084743099","https://openalex.org/W2039737743","https://openalex.org/W4304140872","https://openalex.org/W2039679484","https://openalex.org/W2181530468","https://openalex.org/W1988384104","https://openalex.org/W2124268279"],"abstract_inverted_index":{"High":[0],"Resolution":[1],"Image":[2],"Download":[3],"MS":[4],"PowerPoint":[5],"Slide":[6],"The":[7,44,86,129,221],"structure":[8,172],"of":[9,58,118,136,162,171,178],"a":[10,74],"protein":[11,54],"determines":[12],"its":[13,17],"biological":[14],"function(s)":[15,76],"and":[16,31,33,64,77,84,98,140,153,173,203],"interactions":[18],"with":[19],"other":[20],"factors;":[21],"the":[22,34,101,137,141,160,169,215],"binding":[23,127,174,207],"regions":[24,113],"tend":[25],"to":[26,93,99,125],"be":[27],"conserved":[28],"in":[29,40],"sequence":[30],"structure,":[32],"interacting":[35],"residues":[36,97,121,132,208],"involved":[37],"are":[38,82,166,210],"usually":[39],"close":[41],"3D":[42,105],"space.":[43],"Protein":[45],"Data":[46],"Bank":[47],"currently":[48],"contains":[49],"more":[50],"than":[51],"110":[52],"000":[53],"structures,":[55],"approximately":[56],"one-third":[57],"which":[59,165],"contain":[60],"metal":[61,66,95,103,119,138,179,216],"ions.":[62],"Identifying":[63],"characterizing":[65],"ion-binding":[67,96,120],"sites":[68],"is":[69,224],"thus":[70],"essential":[71],"for":[72,112,147],"investigating":[73],"protein\u2019s":[75],"interactions.":[78],"However,":[79],"experimental":[80],"approaches":[81],"time-consuming":[83],"costly.":[85],"web":[87],"server":[88,223],"reported":[89],"here":[90],"was":[91,145],"built":[92],"predict":[94],"generate":[100],"predicted":[102],"ion-bound":[104],"structure.":[106],"Binding":[107],"templates":[108,130,154],"have":[109,122],"been":[110,123],"constructed":[111],"that":[114],"bind":[115],"12":[116],"types":[117],"used":[124,146],"construct":[126],"templates.":[128],"include":[131],"within":[133],"3.5":[134],"\u00c5":[135],"ion,":[139],"fragment":[142],"transformation":[143],"method":[144],"structural":[148],"comparison":[149],"between":[150],"query":[151],"proteins":[152],"without":[155],"any":[156],"data":[157],"training.":[158],"Through":[159],"adjustment":[161],"scoring":[163],"functions,":[164],"based":[167],"on":[168],"similarity":[170],"residues.":[175],"Twelve":[176],"kinds":[177],"ions":[180,217],"(Ca":[181],"2+,":[182,184,188,190,192,194,196,198,200,202],"Cu":[183,204],"Fe":[185,195],"3+,":[186],"Mg":[187],"Mn":[189],"Zn":[191],"Cd":[193],"Ni":[197],"Hg":[199],"Co":[201],"+":[205],")":[206],"prediction":[209],"supported.":[211],"MIB":[212,222],"also":[213],"provides":[214],"docking":[218],"after":[219],"prediction.":[220],"available":[225],"at":[226],"http://bioinfo.cmu.edu.tw/MIB/":[227],".":[228]},"counts_by_year":[{"year":2026,"cited_by_count":18},{"year":2025,"cited_by_count":37},{"year":2024,"cited_by_count":60},{"year":2023,"cited_by_count":41},{"year":2022,"cited_by_count":59},{"year":2021,"cited_by_count":31},{"year":2020,"cited_by_count":36},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":2}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
