{"id":"https://openalex.org/W2404049899","doi":"https://doi.org/10.1021/acs.jcim.6b00162","title":"AlaScan: A Graphical User Interface for Alanine Scanning Free-Energy Calculations","display_name":"AlaScan: A Graphical User Interface for Alanine Scanning Free-Energy Calculations","publication_year":2016,"publication_date":"2016-05-23","ids":{"openalex":"https://openalex.org/W2404049899","doi":"https://doi.org/10.1021/acs.jcim.6b00162","mag":"2404049899","pmid":"https://pubmed.ncbi.nlm.nih.gov/27214306"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.6b00162","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.6b00162","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103349808","display_name":"Ramadoss Vijayaraj","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]},{"id":"https://openalex.org/I90183372","display_name":"Universit\u00e9 de Lorraine","ror":"https://ror.org/04vfs2w97","country_code":"FR","type":"education","lineage":["https://openalex.org/I90183372"]}],"countries":["FR","US"],"is_corresponding":false,"raw_author_name":"Vijayaraj Ramadoss","raw_affiliation_strings":["Laboratoire\rInternational Associ\u00e9 Centre National de la Recherche Scientifique\ret University of Illinois at Urbana\u2212Champaign, Unit\u00e9\rMixte de Recherche n\u00b07565, Universit\u00e9 de Lorraine, B.P. 70239, 54506 Vand\u0153uvre-l\u00e8s-Nancy cedex, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire\rInternational Associ\u00e9 Centre National de la Recherche Scientifique\ret University of Illinois at Urbana\u2212Champaign, Unit\u00e9\rMixte de Recherche n\u00b07565, Universit\u00e9 de Lorraine, B.P. 70239, 54506 Vand\u0153uvre-l\u00e8s-Nancy cedex, France","institution_ids":["https://openalex.org/I90183372","https://openalex.org/I157725225","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114377472","display_name":"Fran\u00e7ois Dehez","orcid":"https://orcid.org/0000-0001-8076-6222"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]},{"id":"https://openalex.org/I90183372","display_name":"Universit\u00e9 de Lorraine","ror":"https://ror.org/04vfs2w97","country_code":"FR","type":"education","lineage":["https://openalex.org/I90183372"]}],"countries":["FR","US"],"is_corresponding":false,"raw_author_name":"Fran\u00e7ois Dehez","raw_affiliation_strings":["Laboratoire\rInternational Associ\u00e9 Centre National de la Recherche Scientifique\ret University of Illinois at Urbana\u2212Champaign, Unit\u00e9\rMixte de Recherche n\u00b07565, Universit\u00e9 de Lorraine, B.P. 70239, 54506 Vand\u0153uvre-l\u00e8s-Nancy cedex, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire\rInternational Associ\u00e9 Centre National de la Recherche Scientifique\ret University of Illinois at Urbana\u2212Champaign, Unit\u00e9\rMixte de Recherche n\u00b07565, Universit\u00e9 de Lorraine, B.P. 70239, 54506 Vand\u0153uvre-l\u00e8s-Nancy cedex, France","institution_ids":["https://openalex.org/I90183372","https://openalex.org/I157725225","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076283101","display_name":"Christophe Chipot","orcid":"https://orcid.org/0000-0002-9122-1698"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]},{"id":"https://openalex.org/I90183372","display_name":"Universit\u00e9 de Lorraine","ror":"https://ror.org/04vfs2w97","country_code":"FR","type":"education","lineage":["https://openalex.org/I90183372"]}],"countries":["FR","US"],"is_corresponding":true,"raw_author_name":"Christophe Chipot","raw_affiliation_strings":["Department\rof Physics, University of Illinois at Urbana\u2212Champaign, 1110 West Green Street, Urbana, Illinois 61801, United States","Laboratoire\rInternational Associ\u00e9 Centre National de la Recherche Scientifique\ret University of Illinois at Urbana\u2212Champaign, Unit\u00e9\rMixte de Recherche n\u00b07565, Universit\u00e9 de Lorraine, B.P. 70239, 54506 Vand\u0153uvre-l\u00e8s-Nancy cedex, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department\rof Physics, University of Illinois at Urbana\u2212Champaign, 1110 West Green Street, Urbana, Illinois 61801, United States","institution_ids":["https://openalex.org/I157725225"]},{"raw_affiliation_string":"Laboratoire\rInternational Associ\u00e9 Centre National de la Recherche Scientifique\ret University of Illinois at Urbana\u2212Champaign, Unit\u00e9\rMixte de Recherche n\u00b07565, Universit\u00e9 de Lorraine, B.P. 70239, 54506 Vand\u0153uvre-l\u00e8s-Nancy cedex, France","institution_ids":["https://openalex.org/I90183372","https://openalex.org/I157725225","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5076283101"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I157725225","https://openalex.org/I90183372"],"apc_list":null,"apc_paid":null,"fwci":1.5671,"has_fulltext":false,"cited_by_count":34,"citation_normalized_percentile":{"value":0.83384183,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"56","issue":"6","first_page":"1122","last_page":"1126"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/alanine-scanning","display_name":"Alanine scanning","score":0.8688504695892334},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.7473100423812866},{"id":"https://openalex.org/keywords/free-energy-perturbation","display_name":"Free energy perturbation","score":0.6709075570106506},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6570675373077393},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5500912070274353},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.5237310528755188},{"id":"https://openalex.org/keywords/alanine","display_name":"Alanine","score":0.472494512796402},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4659470319747925},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.4346267580986023},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.43201637268066406},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.3190041184425354},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.25889867544174194},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.2112257480621338},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.19487470388412476},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.19400504231452942},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.18615025281906128},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.10740330815315247}],"concepts":[{"id":"https://openalex.org/C2780227090","wikidata":"https://www.wikidata.org/wiki/Q2636892","display_name":"Alanine scanning","level":5,"score":0.8688504695892334},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.7473100423812866},{"id":"https://openalex.org/C162641036","wikidata":"https://www.wikidata.org/wiki/Q5500215","display_name":"Free energy perturbation","level":3,"score":0.6709075570106506},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6570675373077393},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5500912070274353},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.5237310528755188},{"id":"https://openalex.org/C2779856020","wikidata":"https://www.wikidata.org/wiki/Q218642","display_name":"Alanine","level":3,"score":0.472494512796402},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4659470319747925},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.4346267580986023},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.43201637268066406},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.3190041184425354},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.25889867544174194},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2112257480621338},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.19487470388412476},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.19400504231452942},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.18615025281906128},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.10740330815315247},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C16318435","wikidata":"https://www.wikidata.org/wiki/Q149299","display_name":"Mutagenesis","level":4,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000409","descriptor_name":"Alanine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000409","descriptor_name":"Alanine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000409","descriptor_name":"Alanine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.6b00162","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.6b00162","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:27214306","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27214306","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.7099999785423279,"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W185137928","https://openalex.org/W1556106311","https://openalex.org/W1573009101","https://openalex.org/W1625910593","https://openalex.org/W1963697504","https://openalex.org/W1970327318","https://openalex.org/W1970973025","https://openalex.org/W1971940467","https://openalex.org/W1974988138","https://openalex.org/W1975932489","https://openalex.org/W1980535904","https://openalex.org/W1985820931","https://openalex.org/W1989195611","https://openalex.org/W1998645872","https://openalex.org/W2006480004","https://openalex.org/W2013475903","https://openalex.org/W2017007439","https://openalex.org/W2027408247","https://openalex.org/W2029667189","https://openalex.org/W2036941089","https://openalex.org/W2085093645","https://openalex.org/W2087006221","https://openalex.org/W2095719702","https://openalex.org/W2098888753","https://openalex.org/W2103860090","https://openalex.org/W2127604922","https://openalex.org/W2127654342","https://openalex.org/W2133179696","https://openalex.org/W2139678741","https://openalex.org/W2140151763","https://openalex.org/W2150981663","https://openalex.org/W2321640944","https://openalex.org/W2397547384","https://openalex.org/W4241783800"],"related_works":["https://openalex.org/W4236187932","https://openalex.org/W1989527063","https://openalex.org/W3201765258","https://openalex.org/W2058959137","https://openalex.org/W2042655455","https://openalex.org/W2083415230","https://openalex.org/W3094674094","https://openalex.org/W2082874149","https://openalex.org/W2606362592","https://openalex.org/W2047858844"],"abstract_inverted_index":{"Computation":[0],"of":[1,26,35,43,49,55,68,80,95,98,180,215],"the":[2,33,41,53,66,78,92,129,136,148,178,187,209,213,216],"free-energy":[3,99,143,188],"changes":[4],"that":[5,90],"underlie":[6],"molecular":[7,151],"recognition":[8],"and":[9,73,184],"association":[10],"has":[11],"gained":[12],"significant":[13,88],"importance":[14],"due":[15],"to":[16,62,124,134,162,176,185,199],"its":[17],"considerable":[18],"potential":[19],"in":[20,29,64,71,116,139,147,190,211],"drug":[21],"discovery.":[22],"The":[23,47,155,205],"massive":[24],"increase":[25],"computational":[27,59],"power":[28],"recent":[30],"years":[31],"substantiates":[32],"application":[34,54],"more":[36],"accurate":[37],"theoretical":[38],"methods":[39],"for":[40,108,166],"calculation":[42,217],"binding":[44],"free":[45],"energies.":[46],"impact":[48],"such":[50,110],"advances":[51],"is":[52],"parent":[56],"approaches,":[57],"like":[58],"alanine":[60,168],"scanning,":[61],"investigate":[63],"silico":[65],"effect":[67],"amino-acid":[69],"replacement":[70],"protein-ligand":[72],"protein-protein":[74],"complexes,":[75],"or":[76],"probe":[77],"thermostability":[79],"individual":[81],"proteins.":[82],"Because":[83],"human":[84],"effort":[85],"represents":[86],"a":[87,105,120,191,203],"cost":[89],"precludes":[91],"routine":[93],"use":[94],"this":[96,114],"form":[97],"calculations,":[100,141],"minimizing":[101],"manual":[102],"intervention":[103],"constitutes":[104],"stringent":[106],"prerequisite":[107],"any":[109],"systematic":[111],"computation.":[112],"With":[113],"objective":[115],"mind,":[117],"we":[118],"propose":[119],"new":[121],"plug-in,":[122],"referred":[123],"as":[125,145],"AlaScan,":[126],"developed":[127],"within":[128],"popular":[130],"visualization":[131],"program":[132],"VMD":[133],"automate":[135],"major":[137],"steps":[138],"alanine-scanning":[140,182],"employing":[142],"perturbation":[144],"implemented":[146],"widely":[149],"used":[150],"dynamics":[152],"code":[153],"NAMD.":[154],"AlaScan":[156],"plug-in":[157,206],"can":[158,171],"be":[159,173,200],"utilized":[160,174],"upstream,":[161],"prepare":[163],"input":[164],"files":[165],"selected":[167],"mutations.":[169],"It":[170],"also":[172,207],"downstream":[175],"perform":[177],"analysis":[179],"different":[181],"calculations":[183],"report":[186],"estimates":[189],"user-friendly":[192],"graphical":[193],"user":[194],"interface,":[195],"allowing":[196],"favorable":[197],"mutations":[198],"identified":[201],"at":[202],"glance.":[204],"assists":[208],"end-user":[210],"assessing":[212],"reliability":[214],"through":[218],"rapid":[219],"visual":[220],"inspection.":[221]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
