{"id":"https://openalex.org/W7134832042","doi":"https://doi.org/10.1021/acs.jcim.5c03137","title":"The Open Molecular Software Foundation (OMSF) and the Growing Role of Open Source Software in Molecular Modeling","display_name":"The Open Molecular Software Foundation (OMSF) and the Growing Role of Open Source Software in Molecular Modeling","publication_year":2026,"publication_date":"2026-03-10","ids":{"openalex":"https://openalex.org/W7134832042","doi":"https://doi.org/10.1021/acs.jcim.5c03137","pmid":"https://pubmed.ncbi.nlm.nih.gov/41805121"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.5c03137","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c03137","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5128642811","display_name":"Karmen \u010condi\u0107-Jurki\u0107","orcid":null},"institutions":[{"id":"https://openalex.org/I4400573198","display_name":"Open Molecular Software Foundation","ror":"https://ror.org/02en65a92","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I4400573198"]}],"countries":[],"is_corresponding":false,"raw_author_name":"Karmen \u010condi\u0107-Jurki\u0107","raw_affiliation_strings":["Open Molecular Software Foundation"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Open Molecular Software Foundation","institution_ids":["https://openalex.org/I4400573198"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019650412","display_name":"Irfan Alibay","orcid":"https://orcid.org/0000-0001-5787-9130"},"institutions":[{"id":"https://openalex.org/I4400573198","display_name":"Open Molecular Software Foundation","ror":"https://ror.org/02en65a92","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I4400573198"]}],"countries":[],"is_corresponding":false,"raw_author_name":"Irfan Alibay","raw_affiliation_strings":["Open Molecular Software Foundation"],"raw_orcid":"https://orcid.org/0000-0001-5787-9130","affiliations":[{"raw_affiliation_string":"Open Molecular Software Foundation","institution_ids":["https://openalex.org/I4400573198"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087455853","display_name":"Woody Sherman","orcid":"https://orcid.org/0000-0001-9079-1376"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Woody Sherman","raw_affiliation_strings":["Psithera, 66 Galen Street, Watertown, Massachusetts 02472, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Psithera, 66 Galen Street, Watertown, Massachusetts 02472, United States","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078021341","display_name":"Mallory R. Tollefson","orcid":"https://orcid.org/0000-0002-4750-5554"},"institutions":[{"id":"https://openalex.org/I4400573198","display_name":"Open Molecular Software Foundation","ror":"https://ror.org/02en65a92","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I4400573198"]}],"countries":[],"is_corresponding":false,"raw_author_name":"Mallory R. Tollefson","raw_affiliation_strings":["Open Molecular Software Foundation"],"raw_orcid":"https://orcid.org/0000-0002-4750-5554","affiliations":[{"raw_affiliation_string":"Open Molecular Software Foundation","institution_ids":["https://openalex.org/I4400573198"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5128893241","display_name":"W. Patrick Walters","orcid":null},"institutions":[{"id":"https://openalex.org/I4400573198","display_name":"Open Molecular Software Foundation","ror":"https://ror.org/02en65a92","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I4400573198"]}],"countries":[],"is_corresponding":false,"raw_author_name":"W. Patrick Walters","raw_affiliation_strings":["Open Molecular Software Foundation"],"raw_orcid":"https://orcid.org/0000-0003-2860-7958","affiliations":[{"raw_affiliation_string":"Open Molecular Software Foundation","institution_ids":["https://openalex.org/I4400573198"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103100924","display_name":"Zachary Baker","orcid":"https://orcid.org/0000-0001-8401-6672"},"institutions":[{"id":"https://openalex.org/I4400573198","display_name":"Open Molecular Software Foundation","ror":"https://ror.org/02en65a92","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I4400573198"]}],"countries":[],"is_corresponding":false,"raw_author_name":"Zachary Baker","raw_affiliation_strings":["Open Molecular Software Foundation"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Open Molecular Software Foundation","institution_ids":["https://openalex.org/I4400573198"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029475330","display_name":"Lillian T. Chong","orcid":"https://orcid.org/0000-0002-0590-483X"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lillian T. Chong","raw_affiliation_strings":["Department of Chemistry","University of Pittsburgh"],"raw_orcid":"https://orcid.org/0000-0002-0590-483X","affiliations":[{"raw_affiliation_string":"Department of Chemistry","institution_ids":[]},{"raw_affiliation_string":"University of Pittsburgh","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003247762","display_name":"Jennifer N. Wei","orcid":"https://orcid.org/0000-0003-3567-9511"},"institutions":[{"id":"https://openalex.org/I4400573198","display_name":"Open Molecular Software Foundation","ror":"https://ror.org/02en65a92","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I4400573198"]}],"countries":[],"is_corresponding":false,"raw_author_name":"Jennifer N. Wei","raw_affiliation_strings":["Open Molecular Software Foundation"],"raw_orcid":"https://orcid.org/0000-0003-3567-9511","affiliations":[{"raw_affiliation_string":"Open Molecular Software Foundation","institution_ids":["https://openalex.org/I4400573198"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009383312","display_name":"Jeffrey J. Gray","orcid":"https://orcid.org/0000-0001-6380-2324"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeffrey Gray","raw_affiliation_strings":["Department of Chemical and Biomolecular Engineering","Johns Hopkins University"],"raw_orcid":"https://orcid.org/0000-0001-6380-2324","affiliations":[{"raw_affiliation_string":"Department of Chemical and Biomolecular Engineering","institution_ids":[]},{"raw_affiliation_string":"Johns Hopkins University","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068514328","display_name":"Brian D. Weitzner","orcid":"https://orcid.org/0000-0002-1909-0961"},"institutions":[{"id":"https://openalex.org/I1296810283","display_name":"Medpace (United States)","ror":"https://ror.org/05mgcmd27","country_code":"US","type":"company","lineage":["https://openalex.org/I1296810283"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian D. Weitzner","raw_affiliation_strings":["Outpace Bio"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Outpace Bio","institution_ids":["https://openalex.org/I1296810283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010752534","display_name":"Daniel G. A. Smith","orcid":"https://orcid.org/0000-0001-8626-0900"},"institutions":[{"id":"https://openalex.org/I4210137671","display_name":"Sustainable Sciences Institute","ror":"https://ror.org/02y8mb071","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210137671"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel G. A. Smith","raw_affiliation_strings":["Achira, 548 Market Street, PMB 308207, San Francisco, California 94114, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Achira, 548 Market Street, PMB 308207, San Francisco, California 94114, United States","institution_ids":["https://openalex.org/I4210137671"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006314973","display_name":"Julia Koehler Leman","orcid":"https://orcid.org/0000-0002-5693-3593"},"institutions":[{"id":"https://openalex.org/I4400573198","display_name":"Open Molecular Software Foundation","ror":"https://ror.org/02en65a92","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I4400573198"]}],"countries":[],"is_corresponding":false,"raw_author_name":"Julia Koehler Leman","raw_affiliation_strings":["Open Molecular Software Foundation"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Open Molecular Software Foundation","institution_ids":["https://openalex.org/I4400573198"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031856981","display_name":"Chris Bahl","orcid":null},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210166317","display_name":"Dana-Farber/Boston Children's Cancer and Blood Disorders Center","ror":"https://ror.org/05k11pb55","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1288882113","https://openalex.org/I4210117453","https://openalex.org/I4210166317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chris Bahl","raw_affiliation_strings":["AI Proteins","Dana-Farber/Boston Children\u2019s Cancer and Blood Disorders Center","Harvard Medical School"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AI Proteins","institution_ids":[]},{"raw_affiliation_string":"Dana-Farber/Boston Children\u2019s Cancer and Blood Disorders Center","institution_ids":["https://openalex.org/I4210166317"]},{"raw_affiliation_string":"Harvard Medical School","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5128885236","display_name":"David L. Mobley","orcid":null},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]},{"id":"https://openalex.org/I4400573198","display_name":"Open Molecular Software Foundation","ror":"https://ror.org/02en65a92","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I4400573198"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"David L. Mobley","raw_affiliation_strings":["Department of Chemistry, University of California, Irvine, 1120 Natural Sciences II, Irvine, California 92697, United States","Department of Pharmaceutical Sciences, University of California, Irvine, 856 Health Sciences Road, Irvine, California 92697, United States","Open Molecular Software Foundation"],"raw_orcid":"https://orcid.org/0000-0002-1083-5533","affiliations":[{"raw_affiliation_string":"Department of Chemistry, University of California, Irvine, 1120 Natural Sciences II, Irvine, California 92697, United States","institution_ids":["https://openalex.org/I204250578"]},{"raw_affiliation_string":"Department of Pharmaceutical Sciences, University of California, Irvine, 856 Health Sciences Road, Irvine, California 92697, United States","institution_ids":["https://openalex.org/I204250578"]},{"raw_affiliation_string":"Open Molecular Software Foundation","institution_ids":["https://openalex.org/I4400573198"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":14,"corresponding_author_ids":["https://openalex.org/A5128885236"],"corresponding_institution_ids":["https://openalex.org/I204250578","https://openalex.org/I4400573198"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.50666012,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"66","issue":"6","first_page":"2967","last_page":"2984"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.4325999915599823,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.4325999915599823,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.1753000020980835,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.028999999165534973,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.6460999846458435},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5340999960899353},{"id":"https://openalex.org/keywords/incentive","display_name":"Incentive","score":0.49230000376701355},{"id":"https://openalex.org/keywords/social-software-engineering","display_name":"Social software engineering","score":0.42289999127388},{"id":"https://openalex.org/keywords/open-research","display_name":"Open research","score":0.3896999955177307},{"id":"https://openalex.org/keywords/foundation","display_name":"Foundation (evidence)","score":0.32919999957084656},{"id":"https://openalex.org/keywords/software-development","display_name":"Software development","score":0.32499998807907104},{"id":"https://openalex.org/keywords/bridging","display_name":"Bridging (networking)","score":0.32350000739097595}],"concepts":[{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.6460999846458435},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5709999799728394},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.5575000047683716},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5340999960899353},{"id":"https://openalex.org/C29122968","wikidata":"https://www.wikidata.org/wiki/Q1414816","display_name":"Incentive","level":2,"score":0.49230000376701355},{"id":"https://openalex.org/C182500959","wikidata":"https://www.wikidata.org/wiki/Q7551380","display_name":"Social software engineering","level":5,"score":0.42289999127388},{"id":"https://openalex.org/C2778464652","wikidata":"https://www.wikidata.org/wiki/Q309849","display_name":"Open research","level":2,"score":0.3896999955177307},{"id":"https://openalex.org/C2780966255","wikidata":"https://www.wikidata.org/wiki/Q5474306","display_name":"Foundation (evidence)","level":2,"score":0.32919999957084656},{"id":"https://openalex.org/C529173508","wikidata":"https://www.wikidata.org/wiki/Q638608","display_name":"Software development","level":3,"score":0.32499998807907104},{"id":"https://openalex.org/C174348530","wikidata":"https://www.wikidata.org/wiki/Q188635","display_name":"Bridging (networking)","level":2,"score":0.32350000739097595},{"id":"https://openalex.org/C110354214","wikidata":"https://www.wikidata.org/wiki/Q6314146","display_name":"Engineering management","level":1,"score":0.3149999976158142},{"id":"https://openalex.org/C186846655","wikidata":"https://www.wikidata.org/wiki/Q3398377","display_name":"Software construction","level":4,"score":0.31369999051094055},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.2994999885559082},{"id":"https://openalex.org/C76518257","wikidata":"https://www.wikidata.org/wiki/Q271680","display_name":"Software framework","level":5,"score":0.2955000102519989},{"id":"https://openalex.org/C174683762","wikidata":"https://www.wikidata.org/wiki/Q609588","display_name":"Component-based software engineering","level":4,"score":0.29280000925064087},{"id":"https://openalex.org/C35869016","wikidata":"https://www.wikidata.org/wiki/Q846636","display_name":"Software architecture","level":3,"score":0.2888000011444092},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.28769999742507935},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.2842000126838684},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.2782999873161316},{"id":"https://openalex.org/C149091818","wikidata":"https://www.wikidata.org/wiki/Q2429814","display_name":"Software system","level":3,"score":0.2761000096797943},{"id":"https://openalex.org/C44416564","wikidata":"https://www.wikidata.org/wiki/Q7554199","display_name":"Software Engineering Process Group","level":5,"score":0.2694999873638153},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.26750001311302185},{"id":"https://openalex.org/C171981572","wikidata":"https://www.wikidata.org/wiki/Q7554239","display_name":"Software analytics","level":5,"score":0.2639999985694885},{"id":"https://openalex.org/C2988343187","wikidata":"https://www.wikidata.org/wiki/Q1130645","display_name":"Open source software","level":3,"score":0.2556000053882599},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.2547000050544739},{"id":"https://openalex.org/C202105479","wikidata":"https://www.wikidata.org/wiki/Q265013","display_name":"Software evolution","level":5,"score":0.25290000438690186}],"mesh":[{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.5c03137","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c03137","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:41805121","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41805121","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.6770195364952087,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G1311028294","display_name":null,"funder_award_id":"TI-2303740","funder_id":"https://openalex.org/F4320332167","funder_display_name":"Directorate for Biological Sciences"},{"id":"https://openalex.org/G1794966156","display_name":null,"funder_award_id":"R01GM132386","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G26676669","display_name":null,"funder_award_id":"R35GM148236","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G2770884900","display_name":null,"funder_award_id":"EOSS5 2022-252547","funder_id":"https://openalex.org/F4320315474","funder_display_name":"Chan Zuckerberg Initiative"},{"id":"https://openalex.org/G316163107","display_name":null,"funder_award_id":"TI 2346068","funder_id":"https://openalex.org/F4320332167","funder_display_name":"Directorate for Biological Sciences"}],"funders":[{"id":"https://openalex.org/F4320315474","display_name":"Chan Zuckerberg Initiative","ror":"https://ror.org/02qenvm24"},{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":113,"referenced_works":["https://openalex.org/W1031578623","https://openalex.org/W1587176568","https://openalex.org/W1788075660","https://openalex.org/W1977902160","https://openalex.org/W1981021420","https://openalex.org/W1989474096","https://openalex.org/W2001398410","https://openalex.org/W2004384558","https://openalex.org/W2017419154","https://openalex.org/W2017829285","https://openalex.org/W2032592607","https://openalex.org/W2039588355","https://openalex.org/W2072604508","https://openalex.org/W2080521412","https://openalex.org/W2083518522","https://openalex.org/W2091334137","https://openalex.org/W2093755925","https://openalex.org/W2110507597","https://openalex.org/W2110688728","https://openalex.org/W2128494768","https://openalex.org/W2135625048","https://openalex.org/W2140841928","https://openalex.org/W2154670681","https://openalex.org/W2170711116","https://openalex.org/W2205290669","https://openalex.org/W2334531949","https://openalex.org/W2385735394","https://openalex.org/W2510475640","https://openalex.org/W2527541313","https://openalex.org/W2541404351","https://openalex.org/W2556565974","https://openalex.org/W2606439133","https://openalex.org/W2772606519","https://openalex.org/W2774738748","https://openalex.org/W2791574358","https://openalex.org/W2910318997","https://openalex.org/W2935766410","https://openalex.org/W2941138866","https://openalex.org/W2944245644","https://openalex.org/W2963024052","https://openalex.org/W2990010612","https://openalex.org/W2999044305","https://openalex.org/W3002363522","https://openalex.org/W3003257820","https://openalex.org/W3022734214","https://openalex.org/W3022874274","https://openalex.org/W3034390843","https://openalex.org/W3035965352","https://openalex.org/W3046751266","https://openalex.org/W3047663514","https://openalex.org/W3054319032","https://openalex.org/W3102888561","https://openalex.org/W3109230444","https://openalex.org/W3123336377","https://openalex.org/W3155545561","https://openalex.org/W3155944610","https://openalex.org/W3186179742","https://openalex.org/W3195039506","https://openalex.org/W3215353166","https://openalex.org/W3215748819","https://openalex.org/W4212835619","https://openalex.org/W4226013321","https://openalex.org/W4226016556","https://openalex.org/W4296032638","https://openalex.org/W4297914802","https://openalex.org/W4308653706","https://openalex.org/W4310009794","https://openalex.org/W4320149430","https://openalex.org/W4328102269","https://openalex.org/W4376226284","https://openalex.org/W4377292669","https://openalex.org/W4383825311","https://openalex.org/W4383957026","https://openalex.org/W4384304620","https://openalex.org/W4385196378","https://openalex.org/W4388870365","https://openalex.org/W4390920886","https://openalex.org/W4391024294","https://openalex.org/W4391308485","https://openalex.org/W4391429053","https://openalex.org/W4391637501","https://openalex.org/W4392544734","https://openalex.org/W4396511041","https://openalex.org/W4396895148","https://openalex.org/W4399808054","https://openalex.org/W4400555124","https://openalex.org/W4402827655","https://openalex.org/W4403506182","https://openalex.org/W4404115367","https://openalex.org/W4405024324","https://openalex.org/W4408403695","https://openalex.org/W4408934460","https://openalex.org/W4410993625","https://openalex.org/W4411568109","https://openalex.org/W4413340128","https://openalex.org/W4413759428","https://openalex.org/W4414127859","https://openalex.org/W4415627182","https://openalex.org/W4415659058","https://openalex.org/W4416501507","https://openalex.org/W4416718667","https://openalex.org/W6894218614","https://openalex.org/W6911912578","https://openalex.org/W6912149391","https://openalex.org/W6950516877","https://openalex.org/W6967460314","https://openalex.org/W6968831190","https://openalex.org/W7076594065","https://openalex.org/W7091632090","https://openalex.org/W7103984969","https://openalex.org/W7114999808","https://openalex.org/W7115913794","https://openalex.org/W7131784838"],"related_works":[],"abstract_inverted_index":{"The":[0,30,143,156],"increasing":[1],"importance":[2],"and":[3,13,41,49,92,101,108,126,136,171,179,189,206],"predictive":[4],"power":[5],"of":[6,27,99,105,145],"modern":[7],"molecular":[8,219],"modeling,":[9],"driven":[10],"by":[11,95],"physics-":[12],"machine-learning-based":[14],"methods,":[15],"necessitates":[16],"a":[17,90,162,167,195],"new":[18,112],"collaborative":[19],"architecture":[20],"to":[21,35,76,130,201],"replace":[22],"the":[23,77,97,217],"isolated,":[24],"traditional":[25,31],"model":[26],"software":[28,88,182,209],"development.":[29],"approach":[32],"often":[33],"led":[34],"redundant":[36],"engineering":[37],"effort,":[38],"high":[39],"costs,":[40],"opaque":[42],"systems":[43],"that":[44,152,215],"limit":[45],"reproducibility,":[46],"independent":[47],"scrutiny,":[48],"scientific":[50,91,103],"independence.":[51],"Additionally,":[52],"it":[53,65,73],"results":[54],"in":[55,61],"taxpayer-funded":[56],"research":[57,181],"being":[58],"left":[59],"siloed":[60],"commercial":[62],"tools":[63,107],"where":[64,198],"cannot":[66],"have":[67,128],"as":[68,71,89,118,166],"much":[69],"impact":[70],"if":[72],"were":[74],"returned":[75],"general":[78],"public.":[79],"This":[80,192],"Perspective":[81],"advocates":[82],"for":[83],"permissively":[84],"licensed":[85],"open":[86],"source":[87],"economic":[93],"multiplier":[94],"reducing":[96],"duplication":[98],"effort":[100],"enabling":[102],"validation":[104],"modeling":[106,220],"frictionless":[109],"experimentation":[110],"with":[111],"ideas.":[113],"Coordinated":[114],"multiproject":[115],"consortia,":[116],"such":[117],"Open":[119,122,157],"Force":[120],"Field,":[121],"Free":[123],"Energy,":[124],"OpenFold,":[125],"OpenADMET,":[127],"formed":[129],"collaboratively":[131],"build":[132],"shared":[133],"computational":[134],"infrastructure":[135],"release":[137],"all":[138],"methods":[139],"under":[140],"permissive":[141],"licenses.":[142],"success":[144],"these":[146],"large-scale":[147],"efforts":[148],"requires":[149],"organizational":[150],"structures":[151],"extend":[153],"beyond":[154],"code.":[155],"Molecular":[158],"Software":[159],"Foundation":[160],"(OMSF),":[161],"U.S.":[163],"nonprofit,":[164],"serves":[165],"domain-specific":[168],"institutional":[169],"home":[170],"fiscal":[172],"sponsor.":[173],"By":[174],"providing":[175],"governance,":[176],"administrative":[177],"infrastructure,":[178],"dedicated":[180],"engineers,":[183],"OMSF":[184],"aligns":[185],"incentives":[186],"across":[187],"academic":[188],"industrial":[190],"stakeholders.":[191],"framework":[193],"enables":[194],"synergistic":[196],"ecosystem":[197],"projects":[199],"interoperate":[200],"accelerate":[202],"innovation,":[203],"eliminate":[204],"duplication,":[205],"ensure":[207],"long-term":[208],"sustainability,":[210],"thereby":[211],"creating":[212],"durable":[213],"foundations":[214],"elevate":[216],"entire":[218],"community.":[221]},"counts_by_year":[],"updated_date":"2026-05-04T08:30:34.212998","created_date":"2026-03-11T00:00:00"}
