{"id":"https://openalex.org/W7136401522","doi":"https://doi.org/10.1021/acs.jcim.5c02961","title":"Graph Neural Networks Model Based on Atomic Hybridization for Predicting Drug Targets","display_name":"Graph Neural Networks Model Based on Atomic Hybridization for Predicting Drug Targets","publication_year":2026,"publication_date":"2026-03-16","ids":{"openalex":"https://openalex.org/W7136401522","doi":"https://doi.org/10.1021/acs.jcim.5c02961","pmid":"https://pubmed.ncbi.nlm.nih.gov/41838774"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.5c02961","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c02961","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1021/acs.jcim.5c02961","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Ashraf Mohamed","orcid":"https://orcid.org/0000-0002-6753-7254"},"institutions":[{"id":"https://openalex.org/I2799847335","display_name":"Art Institute of Portland","ror":"https://ror.org/01cb0jg64","country_code":"US","type":"education","lineage":["https://openalex.org/I2799847335","https://openalex.org/I2799969541"]},{"id":"https://openalex.org/I4210138871","display_name":"Steris (United States)","ror":"https://ror.org/03qmsrr79","country_code":"US","type":"company","lineage":["https://openalex.org/I4210138871"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ashraf Mohamed","raw_affiliation_strings":["AI Department","Areeb Innovative Technologies"],"raw_orcid":"https://orcid.org/0000-0002-6753-7254","affiliations":[{"raw_affiliation_string":"AI Department","institution_ids":["https://openalex.org/I2799847335"]},{"raw_affiliation_string":"Areeb Innovative Technologies","institution_ids":["https://openalex.org/I4210138871"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115778752","display_name":"Noha Galal","orcid":null},"institutions":[{"id":"https://openalex.org/I118692353","display_name":"University of Science and Technology","ror":"https://ror.org/05bj7sh33","country_code":"YE","type":"education","lineage":["https://openalex.org/I118692353"]},{"id":"https://openalex.org/I4210150948","display_name":"Zewail City of Science and Technology","ror":"https://ror.org/04w5f4y88","country_code":"EG","type":"education","lineage":["https://openalex.org/I4210150948"]},{"id":"https://openalex.org/I4210160384","display_name":"Institute of Biomedical Science","ror":"https://ror.org/05t77d857","country_code":"GB","type":"other","lineage":["https://openalex.org/I4210160384"]}],"countries":["EG","GB","YE"],"is_corresponding":false,"raw_author_name":"Noha Galal","raw_affiliation_strings":["Biomedical Sciences Program","University of Science and Technology, Zewail City of Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Sciences Program","institution_ids":["https://openalex.org/I4210160384"]},{"raw_affiliation_string":"University of Science and Technology, Zewail City of Science and Technology","institution_ids":["https://openalex.org/I4210150948","https://openalex.org/I118692353"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079782789","display_name":"Bernard R. Brooks","orcid":"https://orcid.org/0000-0002-3586-2730"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210106489","display_name":"National Heart Lung and Blood Institute","ror":"https://ror.org/012pb6c26","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210106489"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bernard R. Brooks","raw_affiliation_strings":["Laboratory of Computational Biology","National Heart, Lung and Blood Institute, National Institutes of Health"],"raw_orcid":"https://orcid.org/0000-0002-3586-2730","affiliations":[{"raw_affiliation_string":"Laboratory of Computational Biology","institution_ids":[]},{"raw_affiliation_string":"National Heart, Lung and Blood Institute, National Institutes of Health","institution_ids":["https://openalex.org/I4210106489","https://openalex.org/I1299303238"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018180963","display_name":"Muhamed Amin","orcid":"https://orcid.org/0000-0002-3146-150X"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210106489","display_name":"National Heart Lung and Blood Institute","ror":"https://ror.org/012pb6c26","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210106489"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Muhamed Amin","raw_affiliation_strings":["Laboratory of Computational Biology","National Heart, Lung and Blood Institute, National Institutes of Health"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Computational Biology","institution_ids":[]},{"raw_affiliation_string":"National Heart, Lung and Blood Institute, National Institutes of Health","institution_ids":["https://openalex.org/I4210106489","https://openalex.org/I1299303238"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5018180963"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I2799847335","https://openalex.org/I4210106489","https://openalex.org/I4210138871"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.53648074,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"66","issue":"7","first_page":"3590","last_page":"3600"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.326200008392334,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.326200008392334,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.1826999932527542,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11476","display_name":"Graph theory and applications","score":0.039400000125169754,"subfield":{"id":"https://openalex.org/subfields/2608","display_name":"Geometry and Topology"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.552299976348877},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5221999883651733},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4146000146865845},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.3659000098705292},{"id":"https://openalex.org/keywords/deep-neural-networks","display_name":"Deep neural networks","score":0.313400000333786},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.28200000524520874}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.621999979019165},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5649999976158142},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.552299976348877},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5221999883651733},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4146000146865845},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.3659000098705292},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.36309999227523804},{"id":"https://openalex.org/C2984842247","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep neural networks","level":3,"score":0.313400000333786},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.30410000681877136},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3009999990463257},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.28200000524520874},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.2799000144004822},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.2676999866962433},{"id":"https://openalex.org/C2989108626","wikidata":"https://www.wikidata.org/wiki/Q904407","display_name":"Drug target","level":2,"score":0.26089999079704285}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021281","descriptor_name":"Quantitative Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021281","descriptor_name":"Quantitative Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.5c02961","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c02961","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:41838774","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41838774","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":{"id":"doi:10.1021/acs.jcim.5c02961","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c02961","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W1981737096","https://openalex.org/W1988037271","https://openalex.org/W2033757486","https://openalex.org/W2087325248","https://openalex.org/W2128245586","https://openalex.org/W2155478691","https://openalex.org/W2160592148","https://openalex.org/W2164122188","https://openalex.org/W2164460325","https://openalex.org/W2185181061","https://openalex.org/W2189911347","https://openalex.org/W2208585803","https://openalex.org/W2410227830","https://openalex.org/W2481496926","https://openalex.org/W2582187633","https://openalex.org/W2593816418","https://openalex.org/W2883583109","https://openalex.org/W2891152864","https://openalex.org/W2903262661","https://openalex.org/W2907492528","https://openalex.org/W2950128007","https://openalex.org/W2966357564","https://openalex.org/W2968734407","https://openalex.org/W2969996838","https://openalex.org/W3007309629","https://openalex.org/W3023042104","https://openalex.org/W3089428833","https://openalex.org/W3110933132","https://openalex.org/W3120428435","https://openalex.org/W3130218089","https://openalex.org/W3137188301","https://openalex.org/W3216638646","https://openalex.org/W4220694238","https://openalex.org/W4220791315","https://openalex.org/W4288419263","https://openalex.org/W4297733535","https://openalex.org/W4362685277","https://openalex.org/W4386096666","https://openalex.org/W4387142705","https://openalex.org/W4387773379","https://openalex.org/W4388455891","https://openalex.org/W4394998532","https://openalex.org/W4404374484","https://openalex.org/W4406017182","https://openalex.org/W4408665066","https://openalex.org/W4409986380","https://openalex.org/W4413994148","https://openalex.org/W4414290389","https://openalex.org/W4414877928","https://openalex.org/W4414895770"],"related_works":[],"abstract_inverted_index":{"of":[0],"0.87,":[1],"consistently":[2],"outperforming":[3],"previously":[4],"reported":[5],"methods":[6],"by":[7],"6-42%":[8],"across":[9],"evaluated":[10],"targets.":[11],"The":[12],"model":[13],"demonstrated":[14],"robust":[15],"generalization":[16],"with":[17,39],"near-identical":[18],"training":[19],"and":[20,31,48,58],"test":[21],"performance,":[22],"while":[23],"maintaining":[24],"partial":[25],"interpretability":[26,49],"through":[27],"transparent":[28],"descriptor":[29],"contributions":[30],"attention":[32],"mechanisms.":[33],"By":[34],"synergistically":[35],"combining":[36],"data-driven":[37],"learning":[38],"domain":[40],"knowledge,":[41],"this":[42],"hybrid":[43],"framework":[44],"offers":[45],"improved":[46],"accuracy":[47],"for":[50],"structure-activity":[51],"modeling,":[52],"facilitating":[53],"more":[54],"efficient":[55],"compound":[56],"prioritization":[57],"optimization":[59],"in":[60],"early":[61],"stage":[62],"drug":[63],"discovery":[64],"programs.":[65]},"counts_by_year":[],"updated_date":"2026-04-28T14:05:53.105641","created_date":"2026-03-17T00:00:00"}
