{"id":"https://openalex.org/W7134803521","doi":"https://doi.org/10.1021/acs.jcim.5c02840","title":"Controlling Spatial Organization of HIV Coreceptor CCR5","display_name":"Controlling Spatial Organization of HIV Coreceptor CCR5","publication_year":2026,"publication_date":"2026-03-09","ids":{"openalex":"https://openalex.org/W7134803521","doi":"https://doi.org/10.1021/acs.jcim.5c02840","pmid":"https://pubmed.ncbi.nlm.nih.gov/41802286"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.5c02840","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c02840","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101556817","display_name":"Shivam Gupta","orcid":"https://orcid.org/0009-0003-7256-434X"},"institutions":[{"id":"https://openalex.org/I94234084","display_name":"Indian Institute of Technology Kanpur","ror":"https://ror.org/05pjsgx75","country_code":"IN","type":"education","lineage":["https://openalex.org/I94234084"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Shivam Gupta","raw_affiliation_strings":["Department of Physics","Indian Institute of Technology Kanpur"],"raw_orcid":"https://orcid.org/0009-0003-7256-434X","affiliations":[{"raw_affiliation_string":"Department of Physics","institution_ids":[]},{"raw_affiliation_string":"Indian Institute of Technology Kanpur","institution_ids":["https://openalex.org/I94234084"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083231687","display_name":"Taraknath Mandal","orcid":"https://orcid.org/0000-0002-9902-2415"},"institutions":[{"id":"https://openalex.org/I94234084","display_name":"Indian Institute of Technology Kanpur","ror":"https://ror.org/05pjsgx75","country_code":"IN","type":"education","lineage":["https://openalex.org/I94234084"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Taraknath Mandal","raw_affiliation_strings":["Department of Physics","Indian Institute of Technology Kanpur"],"raw_orcid":"https://orcid.org/0000-0002-9902-2415","affiliations":[{"raw_affiliation_string":"Department of Physics","institution_ids":[]},{"raw_affiliation_string":"Indian Institute of Technology Kanpur","institution_ids":["https://openalex.org/I94234084"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5083231687"],"corresponding_institution_ids":["https://openalex.org/I94234084"],"apc_list":null,"apc_paid":null,"fwci":14.8544,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.98659693,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"66","issue":"6","first_page":"3249","last_page":"3258"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9090999960899353,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9090999960899353,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11532","display_name":"Chemokine receptors and signaling","score":0.051100000739097595,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10407","display_name":"Lipid Membrane Structure and Behavior","score":0.008100000210106373,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gp41","display_name":"Gp41","score":0.6227999925613403},{"id":"https://openalex.org/keywords/lipid-bilayer-fusion","display_name":"Lipid bilayer fusion","score":0.5515000224113464},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5016999840736389},{"id":"https://openalex.org/keywords/fusion","display_name":"Fusion","score":0.4043000042438507},{"id":"https://openalex.org/keywords/viral-entry","display_name":"Viral entry","score":0.3926999866962433},{"id":"https://openalex.org/keywords/chemokine-receptor","display_name":"Chemokine receptor","score":0.38749998807907104},{"id":"https://openalex.org/keywords/cell-fusion","display_name":"Cell fusion","score":0.3781000077724457},{"id":"https://openalex.org/keywords/human-immunodeficiency-virus","display_name":"Human immunodeficiency virus (HIV)","score":0.3287000060081482}],"concepts":[{"id":"https://openalex.org/C2776258796","wikidata":"https://www.wikidata.org/wiki/Q5590520","display_name":"Gp41","level":4,"score":0.6227999925613403},{"id":"https://openalex.org/C103038307","wikidata":"https://www.wikidata.org/wiki/Q6556360","display_name":"Lipid bilayer fusion","level":3,"score":0.5515000224113464},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5016999840736389},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.49900001287460327},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.4927999973297119},{"id":"https://openalex.org/C158525013","wikidata":"https://www.wikidata.org/wiki/Q2593739","display_name":"Fusion","level":2,"score":0.4043000042438507},{"id":"https://openalex.org/C58475186","wikidata":"https://www.wikidata.org/wiki/Q4118894","display_name":"Viral entry","level":4,"score":0.3926999866962433},{"id":"https://openalex.org/C12823836","wikidata":"https://www.wikidata.org/wiki/Q24720618","display_name":"Chemokine receptor","level":4,"score":0.38749998807907104},{"id":"https://openalex.org/C92488253","wikidata":"https://www.wikidata.org/wiki/Q56592403","display_name":"Cell fusion","level":3,"score":0.3781000077724457},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.35600000619888306},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34299999475479126},{"id":"https://openalex.org/C3013748606","wikidata":"https://www.wikidata.org/wiki/Q15787","display_name":"Human immunodeficiency virus (HIV)","level":2,"score":0.3287000060081482},{"id":"https://openalex.org/C2778106830","wikidata":"https://www.wikidata.org/wiki/Q29548","display_name":"Cell membrane","level":3,"score":0.32820001244544983},{"id":"https://openalex.org/C39944091","wikidata":"https://www.wikidata.org/wiki/Q423279","display_name":"Lipid bilayer","level":3,"score":0.3271999955177307},{"id":"https://openalex.org/C125590012","wikidata":"https://www.wikidata.org/wiki/Q2086231","display_name":"Co-receptor","level":3,"score":0.3107999861240387},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.29350000619888306},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.29010000824928284},{"id":"https://openalex.org/C144292202","wikidata":"https://www.wikidata.org/wiki/Q898273","display_name":"Protein domain","level":3,"score":0.27649998664855957},{"id":"https://openalex.org/C192157962","wikidata":"https://www.wikidata.org/wiki/Q4087243","display_name":"Bilayer","level":3,"score":0.26980000734329224},{"id":"https://openalex.org/C41625074","wikidata":"https://www.wikidata.org/wiki/Q176088","display_name":"Membrane","level":2,"score":0.26840001344680786},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.26460000872612},{"id":"https://openalex.org/C45635710","wikidata":"https://www.wikidata.org/wiki/Q418404","display_name":"Chemokine receptor CCR5","level":5,"score":0.2587999999523163},{"id":"https://openalex.org/C175779824","wikidata":"https://www.wikidata.org/wiki/Q7574078","display_name":"Spatial organization","level":2,"score":0.25060001015663147}],"mesh":[{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006678","descriptor_name":"HIV","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008051","descriptor_name":"Lipid Bilayers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008051","descriptor_name":"Lipid Bilayers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008051","descriptor_name":"Lipid Bilayers","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008051","descriptor_name":"Lipid Bilayers","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008244","descriptor_name":"Lysophosphatidylcholines","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008244","descriptor_name":"Lysophosphatidylcholines","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008244","descriptor_name":"Lysophosphatidylcholines","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008244","descriptor_name":"Lysophosphatidylcholines","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015700","descriptor_name":"HIV Envelope Protein gp41","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015700","descriptor_name":"HIV Envelope Protein gp41","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015700","descriptor_name":"HIV Envelope Protein gp41","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015700","descriptor_name":"HIV Envelope Protein gp41","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019713","descriptor_name":"Receptors, CCR5","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D019713","descriptor_name":"Receptors, CCR5","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D019713","descriptor_name":"Receptors, CCR5","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D019713","descriptor_name":"Receptors, CCR5","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019713","descriptor_name":"Receptors, CCR5","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019713","descriptor_name":"Receptors, CCR5","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.5c02840","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c02840","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:41802286","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41802286","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.7614613175392151,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G1259261673","display_name":null,"funder_award_id":"SRG/2022/000548","funder_id":"https://openalex.org/F4320334771","funder_display_name":"Science and Engineering Research Board"}],"funders":[{"id":"https://openalex.org/F4320320712","display_name":"Indian Institute of Technology Kanpur","ror":"https://ror.org/05pjsgx75"},{"id":"https://openalex.org/F4320334771","display_name":"Science and Engineering Research Board","ror":"https://ror.org/03ffdsr55"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":78,"referenced_works":["https://openalex.org/W1031578623","https://openalex.org/W1513059802","https://openalex.org/W1564861448","https://openalex.org/W1841539097","https://openalex.org/W1964713456","https://openalex.org/W1970860713","https://openalex.org/W1989675515","https://openalex.org/W1991655565","https://openalex.org/W1993117571","https://openalex.org/W1999236343","https://openalex.org/W2023811614","https://openalex.org/W2027504135","https://openalex.org/W2028457751","https://openalex.org/W2029226831","https://openalex.org/W2040937367","https://openalex.org/W2047829931","https://openalex.org/W2057477511","https://openalex.org/W2060809301","https://openalex.org/W2069856609","https://openalex.org/W2076918344","https://openalex.org/W2081571345","https://openalex.org/W2081693079","https://openalex.org/W2090563013","https://openalex.org/W2091044472","https://openalex.org/W2098781795","https://openalex.org/W2099508165","https://openalex.org/W2108001717","https://openalex.org/W2109014958","https://openalex.org/W2109459193","https://openalex.org/W2112154906","https://openalex.org/W2118978641","https://openalex.org/W2119267663","https://openalex.org/W2121936687","https://openalex.org/W2121947019","https://openalex.org/W2130479394","https://openalex.org/W2134723427","https://openalex.org/W2136558879","https://openalex.org/W2139050239","https://openalex.org/W2139171197","https://openalex.org/W2142532813","https://openalex.org/W2146439388","https://openalex.org/W2146933058","https://openalex.org/W2148260939","https://openalex.org/W2153052569","https://openalex.org/W2157075780","https://openalex.org/W2202334926","https://openalex.org/W2329493760","https://openalex.org/W2342950527","https://openalex.org/W2537341571","https://openalex.org/W2584213636","https://openalex.org/W2593960228","https://openalex.org/W2605578568","https://openalex.org/W2731233839","https://openalex.org/W2751124369","https://openalex.org/W2766014895","https://openalex.org/W2792843178","https://openalex.org/W2801994775","https://openalex.org/W2926355223","https://openalex.org/W2945836084","https://openalex.org/W2955636540","https://openalex.org/W2985981345","https://openalex.org/W3009314037","https://openalex.org/W3092835062","https://openalex.org/W3105261809","https://openalex.org/W3157219655","https://openalex.org/W3186962061","https://openalex.org/W4285507444","https://openalex.org/W4288052610","https://openalex.org/W4290973232","https://openalex.org/W4291511565","https://openalex.org/W4301430933","https://openalex.org/W4378213118","https://openalex.org/W4403982579","https://openalex.org/W4406984794","https://openalex.org/W4410287206","https://openalex.org/W4410955407","https://openalex.org/W4411556630","https://openalex.org/W4416530174"],"related_works":[],"abstract_inverted_index":{"CC":[0],"chemokine":[1],"receptor":[2],"type":[3],"5":[4],"(CCR5)":[5],"functions":[6],"as":[7,100],"a":[8,79,119],"key":[9],"coreceptor":[10],"facilitating":[11],"HIV":[12,44],"entry":[13],"into":[14],"host":[15,31],"cells.":[16],"Recent":[17],"experimental":[18],"findings":[19,137],"suggest":[20,138],"that":[21,95,139],"CCR5":[22,70,84],"preferentially":[23,85],"localizes":[24],"at":[25,89,103],"lipid":[26],"domain":[27,72,90,104,113],"boundaries":[28,132],"within":[29,71],"the":[30,43,50,66,125,146],"cell":[32],"membrane,":[33],"where":[34],"its":[35],"positioning":[36],"enhances":[37],"viral":[38],"fusion":[39,45,158],"efficiency":[40],"by":[41,82],"allowing":[42],"peptide":[46],"gp41":[47,128],"to":[48,64,118,129,144,155],"exploit":[49],"mechanically":[51],"weaker":[52],"interface":[53],"regions.":[54],"In":[55],"this":[56],"study,":[57],"we":[58,93],"employ":[59],"coarse-grained":[60],"molecular":[61,80],"dynamics":[62],"simulations":[63],"investigate":[65],"spatial":[67,147],"organization":[68,148],"of":[69,121,127,149],"forming":[73],"model":[74],"membranes.":[75],"Our":[76],"results":[77],"reveal":[78],"mechanism":[81],"which":[83],"migrates":[86],"and":[87,109,159],"stabilizes":[88],"boundaries.":[91],"Additionally,":[92],"show":[94],"lysophosphatidylcholine":[96],"(lysoPC)":[97],"lipids,":[98],"acting":[99],"linactants,":[101],"accumulate":[102],"interfaces,":[105],"reduce":[106],"line":[107],"tension,":[108],"ultimately":[110],"disrupt":[111,145],"membrane":[112,131,157],"organization.":[114],"This":[115],"disruption":[116],"leads":[117],"delocalization":[120],"CCR5,":[122,150],"potentially":[123,151],"impairing":[124],"ability":[126,154],"target":[130],"for":[133],"fusion.":[134],"Together,":[135],"our":[136],"linactants":[140],"may":[141],"be":[142],"employed":[143],"hindering":[152],"HIV's":[153],"initiate":[156],"entry.":[160]},"counts_by_year":[{"year":2026,"cited_by_count":2}],"updated_date":"2026-07-27T08:26:11.824852","created_date":"2026-03-11T00:00:00"}
