{"id":"https://openalex.org/W7127038523","doi":"https://doi.org/10.1021/acs.jcim.5c02513","title":"ME-PFP: An Ensemble Learning Approach Fusing Multi-Source Features for Protein Function Prediction","display_name":"ME-PFP: An Ensemble Learning Approach Fusing Multi-Source Features for Protein Function Prediction","publication_year":2026,"publication_date":"2026-02-01","ids":{"openalex":"https://openalex.org/W7127038523","doi":"https://doi.org/10.1021/acs.jcim.5c02513","pmid":"https://pubmed.ncbi.nlm.nih.gov/41621032"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.5c02513","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c02513","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5124730387","display_name":"Haoxing Luo","orcid":null},"institutions":[{"id":"https://openalex.org/I4210099083","display_name":"Intelligent Software Solutions (United States)","ror":"https://ror.org/00zs99993","country_code":"US","type":"company","lineage":["https://openalex.org/I4210099083"]},{"id":"https://openalex.org/I4210128818","display_name":"Institute of Software","ror":"https://ror.org/033dfsn42","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210128818"]},{"id":"https://openalex.org/I4391768271","display_name":"State Key Laboratory of Software Engineering","ror":"https://ror.org/01z3jn402","country_code":null,"type":"facility","lineage":["https://openalex.org/I37461747","https://openalex.org/I4391768271"]},{"id":"https://openalex.org/I96908189","display_name":"Xinjiang University","ror":"https://ror.org/059gw8r13","country_code":"CN","type":"education","lineage":["https://openalex.org/I96908189"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Haoxing Luo","raw_affiliation_strings":["Key Laboratory of Software Engineering","School of Software","Xinjiang Engineering Research Center of Big Data and Intelligent Software, School of Software","Xinjiang University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Software Engineering","institution_ids":["https://openalex.org/I4210128818","https://openalex.org/I4391768271"]},{"raw_affiliation_string":"School of Software","institution_ids":[]},{"raw_affiliation_string":"Xinjiang Engineering Research Center of Big Data and Intelligent Software, School of Software","institution_ids":["https://openalex.org/I4210099083"]},{"raw_affiliation_string":"Xinjiang University","institution_ids":["https://openalex.org/I96908189"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5124733764","display_name":"Yue Hu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210118628","display_name":"Joint Research Center","ror":"https://ror.org/02ef88m96","country_code":"BE","type":"government","lineage":["https://openalex.org/I1320481043","https://openalex.org/I2800387288","https://openalex.org/I4210118628","https://openalex.org/I4210161702"]},{"id":"https://openalex.org/I4390039265","display_name":"PRG S&Tech (South Korea)","ror":"https://ror.org/02sr2ee22","country_code":null,"type":"company","lineage":["https://openalex.org/I4390039265"]},{"id":"https://openalex.org/I96908189","display_name":"Xinjiang University","ror":"https://ror.org/059gw8r13","country_code":"CN","type":"education","lineage":["https://openalex.org/I96908189"]}],"countries":["BE","CN"],"is_corresponding":false,"raw_author_name":"Yue Hu","raw_affiliation_strings":["Joint International Research Laboratory of Silk Road Multilingual Cognitive Computing","School of Computer Science and Technology","Xinjiang University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Joint International Research Laboratory of Silk Road Multilingual Cognitive Computing","institution_ids":["https://openalex.org/I4210118628"]},{"raw_affiliation_string":"School of Computer Science and Technology","institution_ids":["https://openalex.org/I4390039265"]},{"raw_affiliation_string":"Xinjiang University","institution_ids":["https://openalex.org/I96908189"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5124734219","display_name":"Chaolin Song","orcid":null},"institutions":[{"id":"https://openalex.org/I4210099083","display_name":"Intelligent Software Solutions (United States)","ror":"https://ror.org/00zs99993","country_code":"US","type":"company","lineage":["https://openalex.org/I4210099083"]},{"id":"https://openalex.org/I4210128818","display_name":"Institute of Software","ror":"https://ror.org/033dfsn42","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210128818"]},{"id":"https://openalex.org/I4391768271","display_name":"State Key Laboratory of Software Engineering","ror":"https://ror.org/01z3jn402","country_code":null,"type":"facility","lineage":["https://openalex.org/I37461747","https://openalex.org/I4391768271"]},{"id":"https://openalex.org/I96908189","display_name":"Xinjiang University","ror":"https://ror.org/059gw8r13","country_code":"CN","type":"education","lineage":["https://openalex.org/I96908189"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Chaolin Song","raw_affiliation_strings":["Key Laboratory of Software Engineering","School of Software","Xinjiang Engineering Research Center of Big Data and Intelligent Software, School of Software","Xinjiang University"],"raw_orcid":"https://orcid.org/0009-0008-1680-515X","affiliations":[{"raw_affiliation_string":"Key Laboratory of Software Engineering","institution_ids":["https://openalex.org/I4210128818","https://openalex.org/I4391768271"]},{"raw_affiliation_string":"School of Software","institution_ids":[]},{"raw_affiliation_string":"Xinjiang Engineering Research Center of Big Data and Intelligent Software, School of Software","institution_ids":["https://openalex.org/I4210099083"]},{"raw_affiliation_string":"Xinjiang University","institution_ids":["https://openalex.org/I96908189"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5124716304","display_name":"Xinhui Li","orcid":null},"institutions":[{"id":"https://openalex.org/I4210118628","display_name":"Joint Research Center","ror":"https://ror.org/02ef88m96","country_code":"BE","type":"government","lineage":["https://openalex.org/I1320481043","https://openalex.org/I2800387288","https://openalex.org/I4210118628","https://openalex.org/I4210161702"]},{"id":"https://openalex.org/I4390039265","display_name":"PRG S&Tech (South Korea)","ror":"https://ror.org/02sr2ee22","country_code":null,"type":"company","lineage":["https://openalex.org/I4390039265"]},{"id":"https://openalex.org/I96908189","display_name":"Xinjiang University","ror":"https://ror.org/059gw8r13","country_code":"CN","type":"education","lineage":["https://openalex.org/I96908189"]}],"countries":["BE","CN"],"is_corresponding":false,"raw_author_name":"Xinhui Li","raw_affiliation_strings":["Joint International Research Laboratory of Silk Road Multilingual Cognitive Computing","School of Computer Science and Technology","Xinjiang University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Joint International Research Laboratory of Silk Road Multilingual Cognitive Computing","institution_ids":["https://openalex.org/I4210118628"]},{"raw_affiliation_string":"School of Computer Science and Technology","institution_ids":["https://openalex.org/I4390039265"]},{"raw_affiliation_string":"Xinjiang University","institution_ids":["https://openalex.org/I96908189"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5124703491","display_name":"Yuyin Ma","orcid":null},"institutions":[{"id":"https://openalex.org/I96908189","display_name":"Xinjiang University","ror":"https://ror.org/059gw8r13","country_code":"CN","type":"education","lineage":["https://openalex.org/I96908189"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yuyin Ma","raw_affiliation_strings":["School of Software","Xinjiang University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Software","institution_ids":[]},{"raw_affiliation_string":"Xinjiang University","institution_ids":["https://openalex.org/I96908189"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5124749421","display_name":"Yurong Qian","orcid":null},"institutions":[{"id":"https://openalex.org/I4210099083","display_name":"Intelligent Software Solutions (United States)","ror":"https://ror.org/00zs99993","country_code":"US","type":"company","lineage":["https://openalex.org/I4210099083"]},{"id":"https://openalex.org/I4210118628","display_name":"Joint Research Center","ror":"https://ror.org/02ef88m96","country_code":"BE","type":"government","lineage":["https://openalex.org/I1320481043","https://openalex.org/I2800387288","https://openalex.org/I4210118628","https://openalex.org/I4210161702"]},{"id":"https://openalex.org/I4210128818","display_name":"Institute of Software","ror":"https://ror.org/033dfsn42","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210128818"]},{"id":"https://openalex.org/I4390039265","display_name":"PRG S&Tech (South Korea)","ror":"https://ror.org/02sr2ee22","country_code":null,"type":"company","lineage":["https://openalex.org/I4390039265"]},{"id":"https://openalex.org/I4391768271","display_name":"State Key Laboratory of Software Engineering","ror":"https://ror.org/01z3jn402","country_code":null,"type":"facility","lineage":["https://openalex.org/I37461747","https://openalex.org/I4391768271"]},{"id":"https://openalex.org/I96908189","display_name":"Xinjiang University","ror":"https://ror.org/059gw8r13","country_code":"CN","type":"education","lineage":["https://openalex.org/I96908189"]}],"countries":["BE","CN","US"],"is_corresponding":true,"raw_author_name":"Yurong Qian","raw_affiliation_strings":["Joint International Research Laboratory of Silk Road Multilingual Cognitive Computing","Key Laboratory of Software Engineering","School of Computer Science and Technology","Xinjiang Engineering Research Center of Big Data and Intelligent Software, School of Software","Xinjiang University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Joint International Research Laboratory of Silk Road Multilingual Cognitive Computing","institution_ids":["https://openalex.org/I4210118628"]},{"raw_affiliation_string":"Key Laboratory of Software Engineering","institution_ids":["https://openalex.org/I4210128818","https://openalex.org/I4391768271"]},{"raw_affiliation_string":"School of Computer Science and Technology","institution_ids":["https://openalex.org/I4390039265"]},{"raw_affiliation_string":"Xinjiang Engineering Research Center of Big Data and Intelligent Software, School of Software","institution_ids":["https://openalex.org/I4210099083"]},{"raw_affiliation_string":"Xinjiang University","institution_ids":["https://openalex.org/I96908189"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5124742356","display_name":"Lei Deng","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I96908189","display_name":"Xinjiang University","ror":"https://ror.org/059gw8r13","country_code":"CN","type":"education","lineage":["https://openalex.org/I96908189"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Deng","raw_affiliation_strings":["Central South University","School of Computer Science and Engineering","School of Software","Xinjiang University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central South University","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering","institution_ids":[]},{"raw_affiliation_string":"School of Software","institution_ids":[]},{"raw_affiliation_string":"Xinjiang University","institution_ids":["https://openalex.org/I96908189"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5124703491","https://openalex.org/A5124749421"],"corresponding_institution_ids":["https://openalex.org/I4210099083","https://openalex.org/I4210118628","https://openalex.org/I4210128818","https://openalex.org/I4390039265","https://openalex.org/I4391768271","https://openalex.org/I96908189"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.10171019,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"66","issue":"4","first_page":"2382","last_page":"2391"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.4546000063419342,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.4546000063419342,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.3346000015735626,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.09120000153779984,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/weighting","display_name":"Weighting","score":0.7078999876976013},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.6291000247001648},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.550000011920929},{"id":"https://openalex.org/keywords/ensemble-learning","display_name":"Ensemble learning","score":0.505299985408783},{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"Protein function prediction","score":0.4999000132083893},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.49889999628067017},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.47200000286102295},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.46720001101493835},{"id":"https://openalex.org/keywords/ensemble-forecasting","display_name":"Ensemble forecasting","score":0.42890000343322754}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7558000087738037},{"id":"https://openalex.org/C183115368","wikidata":"https://www.wikidata.org/wiki/Q856577","display_name":"Weighting","level":2,"score":0.7078999876976013},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.6291000247001648},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5669999718666077},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.550000011920929},{"id":"https://openalex.org/C45942800","wikidata":"https://www.wikidata.org/wiki/Q245652","display_name":"Ensemble learning","level":2,"score":0.505299985408783},{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.4999000132083893},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.49889999628067017},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.48330000042915344},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.47200000286102295},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.46720001101493835},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.44920000433921814},{"id":"https://openalex.org/C119898033","wikidata":"https://www.wikidata.org/wiki/Q3433888","display_name":"Ensemble forecasting","level":2,"score":0.42890000343322754},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.4278999865055084},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.4196999967098236},{"id":"https://openalex.org/C33954974","wikidata":"https://www.wikidata.org/wiki/Q486494","display_name":"Sensor fusion","level":2,"score":0.3418999910354614},{"id":"https://openalex.org/C51632099","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Training set","level":2,"score":0.3402999937534332},{"id":"https://openalex.org/C67186912","wikidata":"https://www.wikidata.org/wiki/Q367664","display_name":"Data modeling","level":2,"score":0.32179999351501465},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.31709998846054077},{"id":"https://openalex.org/C158525013","wikidata":"https://www.wikidata.org/wiki/Q2593739","display_name":"Fusion","level":2,"score":0.31049999594688416},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.2939999997615814},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.2890999913215637},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.28780001401901245},{"id":"https://openalex.org/C120936955","wikidata":"https://www.wikidata.org/wiki/Q2155640","display_name":"Empirical research","level":2,"score":0.27059999108314514},{"id":"https://openalex.org/C55037315","wikidata":"https://www.wikidata.org/wiki/Q5421151","display_name":"Experimental data","level":2,"score":0.2639000117778778},{"id":"https://openalex.org/C138958017","wikidata":"https://www.wikidata.org/wiki/Q190087","display_name":"Data type","level":2,"score":0.25940001010894775}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000098406","descriptor_name":"Ensemble Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098406","descriptor_name":"Ensemble Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098406","descriptor_name":"Ensemble Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098406","descriptor_name":"Ensemble Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098406","descriptor_name":"Ensemble Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098406","descriptor_name":"Ensemble Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098437","descriptor_name":"Prediction Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098437","descriptor_name":"Prediction Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098437","descriptor_name":"Prediction Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098437","descriptor_name":"Prediction Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.5c02513","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c02513","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:41621032","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41621032","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G147047731","display_name":null,"funder_award_id":"62266043","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W2045204781","https://openalex.org/W2096173332","https://openalex.org/W2615066396","https://openalex.org/W3023746197","https://openalex.org/W3146944767","https://openalex.org/W3177500196","https://openalex.org/W4205368314","https://openalex.org/W4233120011","https://openalex.org/W4236358448","https://openalex.org/W4281390806","https://openalex.org/W4298004622","https://openalex.org/W4321484068","https://openalex.org/W4323036511","https://openalex.org/W4323438792","https://openalex.org/W4391092744","https://openalex.org/W4392238186","https://openalex.org/W4392971963","https://openalex.org/W4400878682","https://openalex.org/W4402727345","https://openalex.org/W4404447386","https://openalex.org/W4406002713","https://openalex.org/W4406682058","https://openalex.org/W4408212432","https://openalex.org/W4408707092"],"related_works":[],"abstract_inverted_index":{"Proteins,":[0],"as":[1,62],"essential":[2],"components":[3],"of":[4,65,168,194,205],"living":[5],"organisms,":[6],"play":[7],"a":[8,27,79,89,128],"critical":[9],"role":[10],"in":[11,202],"both":[12],"drug":[13,34],"discovery":[14],"and":[15,33,43,68,94,106,158,175],"disease":[16],"mechanism":[17],"research.":[18],"Multiple":[19],"empirical":[20],"studies":[21],"have":[22],"shown":[23],"that":[24,52,84,153,186],"there":[25],"is":[26,48],"significant":[28],"correlation":[29],"between":[30,137],"protein":[31,46,66,90,100,142,195],"function":[32,47,101,143,196],"targets":[35],"with":[36],"therapeutic":[37],"potential.":[38],"Therefore,":[39],"how":[40],"to":[41,54,98,118,132],"accurately":[42],"efficiently":[44],"predict":[45],"an":[49,165],"urgent":[50],"issue":[51],"needs":[53],"be":[55],"addressed.":[56],"Existing":[57],"research":[58],"faces":[59],"challenges":[60],"such":[61],"insufficient":[63],"utilization":[64],"data":[67,97,120,150,173,180],"low":[69],"heterogeneous":[70,108],"fusion":[71,160],"performance.":[72,145],"In":[73],"this":[74,187],"paper,":[75],"we":[76,110],"propose":[77],"ME-PFP,":[78],"novel":[80],"ensemble":[81],"learning":[82],"framework":[83],"integrates":[85],"sequence":[86],"representations":[87],"from":[88],"language":[91],"model,":[92],"domain,":[93],"protein-protein":[95],"interaction":[96],"improve":[99],"prediction.":[102],"To":[103],"effectively":[104],"capture":[105],"utilize":[107],"features,":[109],"design":[111],"three":[112],"specialized":[113],"attention-based":[114],"feature":[115],"extractors":[116],"tailored":[117],"each":[119],"modality.":[121],"These":[122],"features":[123],"are":[124],"then":[125],"fused":[126],"through":[127],"dynamic":[129],"weighting":[130],"strategy":[131],"enable":[133],"complementary":[134],"information":[135],"exchange":[136],"different":[138],"modalities,":[139],"thereby":[140],"improving":[141],"prediction":[144],"Extensive":[146],"experiments":[147],"on":[148,170,177],"benchmark":[149],"sets":[151],"show":[152,185],"ME-PFP":[154],"significantly":[155],"outperforms":[156],"sequence-based":[157],"multisource":[159],"models.":[161],"Notably,":[162],"it":[163],"achieved":[164],"average":[166],"improvement":[167],"13.23%":[169],"the":[171,178,192,203],"human":[172],"set":[174],"11.11%":[176],"yeast":[179],"set.":[181],"The":[182],"experimental":[183],"results":[184],"study":[188],"not":[189],"only":[190],"improves":[191],"accuracy":[193],"prediction,":[197],"but":[198],"also":[199],"promotes":[200],"progress":[201],"field":[204],"computational":[206],"biology.":[207]},"counts_by_year":[],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2026-02-03T00:00:00"}
