{"id":"https://openalex.org/W4417447690","doi":"https://doi.org/10.1021/acs.jcim.5c02364","title":"LGABAN: An Integrated Multi-Scale Approach Combining Graph and Sequence Features for Enhanced Prediction of Drug\u2013Protein Interactions","display_name":"LGABAN: An Integrated Multi-Scale Approach Combining Graph and Sequence Features for Enhanced Prediction of Drug\u2013Protein Interactions","publication_year":2025,"publication_date":"2025-12-18","ids":{"openalex":"https://openalex.org/W4417447690","doi":"https://doi.org/10.1021/acs.jcim.5c02364","pmid":"https://pubmed.ncbi.nlm.nih.gov/41408656"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.5c02364","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c02364","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039180744","display_name":"Yi Wen","orcid":"https://orcid.org/0009-0007-9876-5958"},"institutions":[{"id":"https://openalex.org/I91935597","display_name":"University of South China","ror":"https://ror.org/03mqfn238","country_code":"CN","type":"education","lineage":["https://openalex.org/I91935597"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yi Wen","raw_affiliation_strings":["School of Computer","University of South China"],"raw_orcid":"https://orcid.org/0009-0007-9876-5958","affiliations":[{"raw_affiliation_string":"School of Computer","institution_ids":[]},{"raw_affiliation_string":"University of South China","institution_ids":["https://openalex.org/I91935597"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101463905","display_name":"Shiyu Yan","orcid":null},"institutions":[{"id":"https://openalex.org/I91935597","display_name":"University of South China","ror":"https://ror.org/03mqfn238","country_code":"CN","type":"education","lineage":["https://openalex.org/I91935597"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shiyu Yan","raw_affiliation_strings":["School of Computer","University of South China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer","institution_ids":[]},{"raw_affiliation_string":"University of South China","institution_ids":["https://openalex.org/I91935597"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100726070","display_name":"Min Chen","orcid":"https://orcid.org/0000-0002-2999-7110"},"institutions":[{"id":"https://openalex.org/I4210116091","display_name":"Department of Physics, Mathematics and Informatics","ror":"https://ror.org/023sm4k53","country_code":"BY","type":"facility","lineage":["https://openalex.org/I151823869","https://openalex.org/I4210116091"]},{"id":"https://openalex.org/I96478251","display_name":"Hunan Institute of Technology","ror":"https://ror.org/04n3k2k71","country_code":"CN","type":"education","lineage":["https://openalex.org/I96478251"]}],"countries":["BY","CN"],"is_corresponding":false,"raw_author_name":"Min Chen","raw_affiliation_strings":["Hunan Institute of Technology","School of Computer Science And Engineering"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hunan Institute of Technology","institution_ids":["https://openalex.org/I96478251"]},{"raw_affiliation_string":"School of Computer Science And Engineering","institution_ids":["https://openalex.org/I4210116091"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5120839911","display_name":"Mohamed Amine Moatadid","orcid":null},"institutions":[{"id":"https://openalex.org/I91935597","display_name":"University of South China","ror":"https://ror.org/03mqfn238","country_code":"CN","type":"education","lineage":["https://openalex.org/I91935597"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mohamed Amine Moatadid","raw_affiliation_strings":["School of Computer","University of South China","School of Computer, University of South China, HengYang 421001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer","institution_ids":[]},{"raw_affiliation_string":"University of South China","institution_ids":["https://openalex.org/I91935597"]},{"raw_affiliation_string":"School of Computer, University of South China, HengYang 421001, China","institution_ids":["https://openalex.org/I91935597"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5120000353","display_name":"Juan Yang","orcid":"https://orcid.org/0000-0003-3098-5413"},"institutions":[{"id":"https://openalex.org/I4210151926","display_name":"Hengyang Academy of Agricultural Sciences","ror":"https://ror.org/04dtbmg64","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210151926"]},{"id":"https://openalex.org/I91935597","display_name":"University of South China","ror":"https://ror.org/03mqfn238","country_code":"CN","type":"education","lineage":["https://openalex.org/I91935597"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jiaoxing Yang","raw_affiliation_strings":["The First Affiliated Hospital, Hengyang Medical School","University of South China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The First Affiliated Hospital, Hengyang Medical School","institution_ids":["https://openalex.org/I4210151926"]},{"raw_affiliation_string":"University of South China","institution_ids":["https://openalex.org/I91935597"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5101463905","https://openalex.org/A5120000353"],"corresponding_institution_ids":["https://openalex.org/I4210151926","https://openalex.org/I91935597"],"apc_list":null,"apc_paid":null,"fwci":1.3257,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.87421287,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"66","issue":"1","first_page":"716","last_page":"730"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9045000076293945,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9045000076293945,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.05869999900460243,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.00800000037997961,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.8824999928474426},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.6018000245094299},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5328999757766724},{"id":"https://openalex.org/keywords/feature-learning","display_name":"Feature learning","score":0.5239999890327454},{"id":"https://openalex.org/keywords/timeline","display_name":"Timeline","score":0.5121999979019165},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4634999930858612},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.45210000872612},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.447299987077713}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.8824999928474426},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7605999708175659},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.6018000245094299},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5791000127792358},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5328999757766724},{"id":"https://openalex.org/C59404180","wikidata":"https://www.wikidata.org/wiki/Q17013334","display_name":"Feature learning","level":2,"score":0.5239999890327454},{"id":"https://openalex.org/C4438859","wikidata":"https://www.wikidata.org/wiki/Q186117","display_name":"Timeline","level":2,"score":0.5121999979019165},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.510699987411499},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4634999930858612},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.45210000872612},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.447299987077713},{"id":"https://openalex.org/C2993807640","wikidata":"https://www.wikidata.org/wiki/Q103709453","display_name":"Attention network","level":2,"score":0.42160001397132874},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3492000102996826},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.33709999918937683},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.2921000123023987},{"id":"https://openalex.org/C2779304628","wikidata":"https://www.wikidata.org/wiki/Q3503480","display_name":"Face (sociological concept)","level":2,"score":0.2890999913215637},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2849000096321106},{"id":"https://openalex.org/C38764148","wikidata":"https://www.wikidata.org/wiki/Q17098245","display_name":"Interaction information","level":2,"score":0.27559998631477356},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.27250000834465027},{"id":"https://openalex.org/C116409475","wikidata":"https://www.wikidata.org/wiki/Q1385056","display_name":"External Data Representation","level":2,"score":0.26989999413490295},{"id":"https://openalex.org/C12725497","wikidata":"https://www.wikidata.org/wiki/Q810247","display_name":"Baseline (sea)","level":2,"score":0.260699987411499},{"id":"https://openalex.org/C205203396","wikidata":"https://www.wikidata.org/wiki/Q612143","display_name":"Bilinear interpolation","level":2,"score":0.26019999384880066},{"id":"https://openalex.org/C146380142","wikidata":"https://www.wikidata.org/wiki/Q1137726","display_name":"Directed graph","level":2,"score":0.25450000166893005}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.5c02364","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c02364","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:41408656","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41408656","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1789848803","display_name":null,"funder_award_id":"2025JJ70193","funder_id":"https://openalex.org/F4320322843","funder_display_name":"Natural Science Foundation of\u00a0Hunan Province"},{"id":"https://openalex.org/G2875631755","display_name":null,"funder_award_id":"62572185","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5096405354","display_name":null,"funder_award_id":"2024JJ7115","funder_id":"https://openalex.org/F4320322843","funder_display_name":"Natural Science Foundation of\u00a0Hunan Province"},{"id":"https://openalex.org/G7370526662","display_name":null,"funder_award_id":"2025JJ70119","funder_id":"https://openalex.org/F4320322843","funder_display_name":"Natural Science Foundation of\u00a0Hunan Province"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322843","display_name":"Natural Science Foundation of\u00a0Hunan Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":64,"referenced_works":["https://openalex.org/W2009313526","https://openalex.org/W2025580327","https://openalex.org/W2061136308","https://openalex.org/W2076186508","https://openalex.org/W2104950117","https://openalex.org/W2119821739","https://openalex.org/W2148145769","https://openalex.org/W2148512505","https://openalex.org/W2152454589","https://openalex.org/W2162011385","https://openalex.org/W2167212630","https://openalex.org/W2195660088","https://openalex.org/W2259538443","https://openalex.org/W2336040088","https://openalex.org/W2337424010","https://openalex.org/W2402506318","https://openalex.org/W2473684010","https://openalex.org/W2574342612","https://openalex.org/W2592742128","https://openalex.org/W2753953057","https://openalex.org/W2785947426","https://openalex.org/W2790733063","https://openalex.org/W2793951981","https://openalex.org/W2810986024","https://openalex.org/W2860192827","https://openalex.org/W2886544065","https://openalex.org/W2889321024","https://openalex.org/W2899788782","https://openalex.org/W2902812092","https://openalex.org/W2904742480","https://openalex.org/W2911964244","https://openalex.org/W2918239264","https://openalex.org/W2935632020","https://openalex.org/W3018980093","https://openalex.org/W3023126697","https://openalex.org/W3028589594","https://openalex.org/W3029836473","https://openalex.org/W3039465695","https://openalex.org/W3094950914","https://openalex.org/W3096561213","https://openalex.org/W3138412820","https://openalex.org/W3176168331","https://openalex.org/W3177828909","https://openalex.org/W3202227570","https://openalex.org/W4205328831","https://openalex.org/W4205510792","https://openalex.org/W4210442302","https://openalex.org/W4211219865","https://openalex.org/W4225435640","https://openalex.org/W4300133919","https://openalex.org/W4300865367","https://openalex.org/W4318981550","https://openalex.org/W4322745247","https://openalex.org/W4388006581","https://openalex.org/W4388595306","https://openalex.org/W4396664108","https://openalex.org/W4400142953","https://openalex.org/W4406296130","https://openalex.org/W4407715599","https://openalex.org/W4407852535","https://openalex.org/W4410984525","https://openalex.org/W4412659725","https://openalex.org/W4412678539","https://openalex.org/W4413109091"],"related_works":[],"abstract_inverted_index":{"The":[0],"accurate":[1],"identification":[2],"of":[3,16,22,38,112,139,171],"drug-target":[4,42,172],"interactions":[5,103],"is":[6],"crucial":[7],"for":[8,41,168],"shortening":[9],"the":[10,14,20,36,100,136],"timeline":[11],"and":[12,30,54,84,90,106,117],"lowering":[13],"expenses":[15],"pharmaceutical":[17],"research,":[18],"as":[19],"discovery":[21],"novel":[23,71],"drugs":[24,83,105],"remains":[25],"a":[26,70,94,119,127],"highly":[27],"complex,":[28,61],"resource-intensive,":[29],"lengthy":[31],"endeavor.":[32],"Despite":[33],"progress":[34],"in":[35,51,159],"use":[37],"deep":[39,72],"learning":[40,73],"interaction":[43,63,173],"prediction,":[44],"these":[45],"methods":[46],"still":[47],"face":[48],"substantial":[49],"challenges":[50],"feature":[52,113],"representation":[53],"model":[55,99],"interpretability,":[56],"especially":[57],"when":[58],"dealing":[59],"with":[60],"multiscale":[62,102],"relationships.":[64],"To":[65,97],"address":[66],"this,":[67],"we":[68,125],"propose":[69],"framework,":[74],"LGABAN,":[75],"which":[76],"jointly":[77],"models":[78,158],"multilevel":[79],"information":[80],"from":[81],"both":[82],"proteins":[85],"by":[86],"parallelly":[87],"extracting":[88],"local":[89],"global":[91],"features":[92],"through":[93],"dual-branch":[95],"structure.":[96],"explicitly":[98],"complex":[101],"between":[104],"proteins,":[107],"LGABAN":[108,153],"integrates":[109],"four":[110,146],"types":[111],"pairs\u2500local-local,":[114],"local-global,":[115],"global-local,":[116],"global-global\u2500using":[118],"bilinear":[120],"attention":[121,130],"network":[122,131],"(BAN).":[123],"Additionally,":[124],"introduce":[126],"multihead":[128],"graph":[129,141],"(GAT)":[132],"to":[133],"further":[134],"enhance":[135],"representational":[137],"capacity":[138],"drug":[140],"representations.":[142],"Experimental":[143],"results":[144,165],"on":[145],"publicly":[147],"available":[148],"data":[149],"sets":[150],"reveal":[151],"that":[152],"surpasses":[154],"six":[155],"state-of-the-art":[156],"baseline":[157],"overall":[160],"performance.":[161],"Furthermore,":[162],"satisfactory":[163],"interpretability":[164],"are":[166],"provided":[167],"all":[169],"aspects":[170],"prediction.":[174]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-01-14T00:41:55.809242","created_date":"2025-12-18T00:00:00"}
