{"id":"https://openalex.org/W4416395717","doi":"https://doi.org/10.1021/acs.jcim.5c02234","title":"Generative AI for the Design of Molecules: Advances and Challenges","display_name":"Generative AI for the Design of Molecules: Advances and Challenges","publication_year":2025,"publication_date":"2025-11-18","ids":{"openalex":"https://openalex.org/W4416395717","doi":"https://doi.org/10.1021/acs.jcim.5c02234","pmid":"https://pubmed.ncbi.nlm.nih.gov/41253282"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.5c02234","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c02234","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5115430441","display_name":"Yan Sun","orcid":"https://orcid.org/0009-0008-9447-5002"},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Yan Sun","raw_affiliation_strings":["Department of Biochemistry","Department of Computer Science","University of Western Ontario","Department of Biochemistry, University of Western Ontario, London, Ontario N6A 5C1, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science","institution_ids":[]},{"raw_affiliation_string":"University of Western Ontario","institution_ids":["https://openalex.org/I125749732"]},{"raw_affiliation_string":"Department of Biochemistry, University of Western Ontario, London, Ontario N6A 5C1, Canada","institution_ids":["https://openalex.org/I125749732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059247764","display_name":"Lianghong Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Lianghong Chen","raw_affiliation_strings":["Department of Computer Science","University of Western Ontario","Department of Computer Science, University of Western Ontario, London, Ontario N6A 3K7, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science","institution_ids":[]},{"raw_affiliation_string":"University of Western Ontario","institution_ids":["https://openalex.org/I125749732"]},{"raw_affiliation_string":"Department of Computer Science, University of Western Ontario, London, Ontario N6A 3K7, Canada","institution_ids":["https://openalex.org/I125749732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101353825","display_name":"Zihao Jing","orcid":null},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Zihao Jing","raw_affiliation_strings":["Department of Computer Science","University of Western Ontario","Department of Computer Science, University of Western Ontario, London, Ontario N6A 3K7, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science","institution_ids":[]},{"raw_affiliation_string":"University of Western Ontario","institution_ids":["https://openalex.org/I125749732"]},{"raw_affiliation_string":"Department of Computer Science, University of Western Ontario, London, Ontario N6A 3K7, Canada","institution_ids":["https://openalex.org/I125749732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043971485","display_name":"Yan Yi Li","orcid":"https://orcid.org/0009-0004-9174-1396"},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Yan Yi Li","raw_affiliation_strings":["Department of Biochemistry","University of Western Ontario"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry","institution_ids":[]},{"raw_affiliation_string":"University of Western Ontario","institution_ids":["https://openalex.org/I125749732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100699166","display_name":"Dongkyu Kim","orcid":"https://orcid.org/0000-0003-3941-3446"},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Dongkyu Kim","raw_affiliation_strings":["Department of Biochemistry","University of Western Ontario","Department of Biochemistry, University of Western Ontario, London, Ontario N6A 5C1, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry","institution_ids":[]},{"raw_affiliation_string":"University of Western Ontario","institution_ids":["https://openalex.org/I125749732"]},{"raw_affiliation_string":"Department of Biochemistry, University of Western Ontario, London, Ontario N6A 5C1, Canada","institution_ids":["https://openalex.org/I125749732"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jing-Yan Gao","orcid":null},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Jing-Yan Gao","raw_affiliation_strings":["Department of Biochemistry","University of Western Ontario","Department of Biochemistry, University of Western Ontario, London, Ontario N6A 5C1, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry","institution_ids":[]},{"raw_affiliation_string":"University of Western Ontario","institution_ids":["https://openalex.org/I125749732"]},{"raw_affiliation_string":"Department of Biochemistry, University of Western Ontario, London, Ontario N6A 5C1, Canada","institution_ids":["https://openalex.org/I125749732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020049525","display_name":"Reza Noroozi","orcid":null},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Reza Noroozi","raw_affiliation_strings":["Department of Mechanical & Materials Engineering","University of Western Ontario","Department of Mechanical & Materials Engineering, University of Western Ontario, London, Ontario N6A 5B9, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mechanical & Materials Engineering","institution_ids":[]},{"raw_affiliation_string":"University of Western Ontario","institution_ids":["https://openalex.org/I125749732"]},{"raw_affiliation_string":"Department of Mechanical & Materials Engineering, University of Western Ontario, London, Ontario N6A 5B9, Canada","institution_ids":["https://openalex.org/I125749732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015190140","display_name":"Grace Y. Yi","orcid":"https://orcid.org/0000-0003-3133-3951"},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Grace Y. Yi","raw_affiliation_strings":["Department of Computer Science","Department of Statistical and Actuarial Sciences","University of Western Ontario","Department of Computer Science, University of Western Ontario, London, Ontario N6A 3K7, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science","institution_ids":[]},{"raw_affiliation_string":"Department of Statistical and Actuarial Sciences","institution_ids":[]},{"raw_affiliation_string":"University of Western Ontario","institution_ids":["https://openalex.org/I125749732"]},{"raw_affiliation_string":"Department of Computer Science, University of Western Ontario, London, Ontario N6A 3K7, Canada","institution_ids":["https://openalex.org/I125749732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009383752","display_name":"Conrard Giresse Tetsassi Feugmo","orcid":"https://orcid.org/0000-0002-8992-4335"},"institutions":[{"id":"https://openalex.org/I151746483","display_name":"University of Waterloo","ror":"https://ror.org/01aff2v68","country_code":"CA","type":"education","lineage":["https://openalex.org/I151746483"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Conrard Giresse Tetsassi Feugmo","raw_affiliation_strings":["Department of Chemistry","University of Waterloo","Department of Chemistry, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry","institution_ids":[]},{"raw_affiliation_string":"University of Waterloo","institution_ids":["https://openalex.org/I151746483"]},{"raw_affiliation_string":"Department of Chemistry, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada","institution_ids":["https://openalex.org/I151746483"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028992497","display_name":"Anna Klinkova","orcid":"https://orcid.org/0000-0003-0337-0579"},"institutions":[{"id":"https://openalex.org/I151746483","display_name":"University of Waterloo","ror":"https://ror.org/01aff2v68","country_code":"CA","type":"education","lineage":["https://openalex.org/I151746483"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Anna Klinkova","raw_affiliation_strings":["Department of Chemistry","University of Waterloo"],"raw_orcid":"https://orcid.org/0000-0003-0337-0579","affiliations":[{"raw_affiliation_string":"Department of Chemistry","institution_ids":[]},{"raw_affiliation_string":"University of Waterloo","institution_ids":["https://openalex.org/I151746483"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016494060","display_name":"Kyla N. Sask","orcid":"https://orcid.org/0000-0002-5965-5111"},"institutions":[{"id":"https://openalex.org/I98251732","display_name":"McMaster University","ror":"https://ror.org/02fa3aq29","country_code":"CA","type":"education","lineage":["https://openalex.org/I98251732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Kyla Sask","raw_affiliation_strings":["Department of Materials Science and Engineering","McMaster University","Department of Materials Science and Engineering, McMaster University, Hamilton, Ontario L8S 4L7, Canada"],"raw_orcid":"https://orcid.org/0000-0002-5965-5111","affiliations":[{"raw_affiliation_string":"Department of Materials Science and Engineering","institution_ids":[]},{"raw_affiliation_string":"McMaster University","institution_ids":["https://openalex.org/I98251732"]},{"raw_affiliation_string":"Department of Materials Science and Engineering, McMaster University, Hamilton, Ontario L8S 4L7, Canada","institution_ids":["https://openalex.org/I98251732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078204924","display_name":"Agustinus Kristiadi","orcid":null},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Agustinus Kristiadi","raw_affiliation_strings":["Department of Computer Science","University of Western Ontario","Department of Computer Science, University of Western Ontario, London, Ontario N6A 3K7, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science","institution_ids":[]},{"raw_affiliation_string":"University of Western Ontario","institution_ids":["https://openalex.org/I125749732"]},{"raw_affiliation_string":"Department of Computer Science, University of Western Ontario, London, Ontario N6A 3K7, Canada","institution_ids":["https://openalex.org/I125749732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100383955","display_name":"Boyu Wang","orcid":"https://orcid.org/0000-0002-7413-4162"},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Boyu Wang","raw_affiliation_strings":["Department of Computer Science","University of Western Ontario","Department of Computer Science, University of Western Ontario, London, Ontario N6A 3K7, Canada"],"raw_orcid":"https://orcid.org/0000-0002-7413-4162","affiliations":[{"raw_affiliation_string":"Department of Computer Science","institution_ids":[]},{"raw_affiliation_string":"University of Western Ontario","institution_ids":["https://openalex.org/I125749732"]},{"raw_affiliation_string":"Department of Computer Science, University of Western Ontario, London, Ontario N6A 3K7, Canada","institution_ids":["https://openalex.org/I125749732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021892613","display_name":"Elizabeth R. Gillies","orcid":"https://orcid.org/0000-0002-3983-2248"},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Elizabeth R. Gillies","raw_affiliation_strings":["Department of Chemical and Biochemical Engineering","Department of Chemistry","University of Western Ontario","Department of Chemical and Biochemical Engineering, University of Western Ontario, London, Ontario N6A 5B9, Canada"],"raw_orcid":"https://orcid.org/0000-0002-3983-2248","affiliations":[{"raw_affiliation_string":"Department of Chemical and Biochemical Engineering","institution_ids":[]},{"raw_affiliation_string":"Department of Chemistry","institution_ids":[]},{"raw_affiliation_string":"University of Western Ontario","institution_ids":["https://openalex.org/I125749732"]},{"raw_affiliation_string":"Department of Chemical and Biochemical Engineering, University of Western Ontario, London, Ontario N6A 5B9, Canada","institution_ids":["https://openalex.org/I125749732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030637649","display_name":"Kun Ping Lu","orcid":"https://orcid.org/0000-0002-0734-1567"},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Kun Ping Lu","raw_affiliation_strings":["Department of Biochemistry","University of Western Ontario","Department of Biochemistry, University of Western Ontario, London, Ontario N6A 5C1, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry","institution_ids":[]},{"raw_affiliation_string":"University of Western Ontario","institution_ids":["https://openalex.org/I125749732"]},{"raw_affiliation_string":"Department of Biochemistry, University of Western Ontario, London, Ontario N6A 5C1, Canada","institution_ids":["https://openalex.org/I125749732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089917866","display_name":"Haotian Shi","orcid":"https://orcid.org/0000-0003-2477-9795"},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"HaoTian Harvey Shi","raw_affiliation_strings":["Department of Mechanical & Materials Engineering","University of Western Ontario","Department of Mechanical & Materials Engineering, University of Western Ontario, London, Ontario N6A 5B9, Canada"],"raw_orcid":"https://orcid.org/0000-0003-2477-9795","affiliations":[{"raw_affiliation_string":"Department of Mechanical & Materials Engineering","institution_ids":[]},{"raw_affiliation_string":"University of Western Ontario","institution_ids":["https://openalex.org/I125749732"]},{"raw_affiliation_string":"Department of Mechanical & Materials Engineering, University of Western Ontario, London, Ontario N6A 5B9, Canada","institution_ids":["https://openalex.org/I125749732"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035024838","display_name":"Pingzhao Hu","orcid":"https://orcid.org/0000-0002-9546-2245"},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Pingzhao Hu","raw_affiliation_strings":["Department of Biochemistry","Department of Computer Science","University of Western Ontario","Department of Biochemistry, University of Western Ontario, London, Ontario N6A 5C1, Canada"],"raw_orcid":"https://orcid.org/0000-0002-9546-2245","affiliations":[{"raw_affiliation_string":"Department of Biochemistry","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science","institution_ids":[]},{"raw_affiliation_string":"University of Western Ontario","institution_ids":["https://openalex.org/I125749732"]},{"raw_affiliation_string":"Department of Biochemistry, University of Western Ontario, London, Ontario N6A 5C1, Canada","institution_ids":["https://openalex.org/I125749732"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":17,"corresponding_author_ids":["https://openalex.org/A5035024838"],"corresponding_institution_ids":["https://openalex.org/I125749732"],"apc_list":null,"apc_paid":null,"fwci":3.9771,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.94608031,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"65","issue":"23","first_page":"12668","last_page":"12690"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.6739000082015991,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.6739000082015991,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.08349999785423279,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.027300000190734863,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/generative-grammar","display_name":"Generative grammar","score":0.7376999855041504},{"id":"https://openalex.org/keywords/generative-model","display_name":"Generative model","score":0.4397999942302704},{"id":"https://openalex.org/keywords/chemical-space","display_name":"Chemical space","score":0.43959999084472656},{"id":"https://openalex.org/keywords/generative-design","display_name":"Generative Design","score":0.4016999900341034},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.3458999991416931},{"id":"https://openalex.org/keywords/paradigm-shift","display_name":"Paradigm shift","score":0.3310000002384186},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.3176000118255615}],"concepts":[{"id":"https://openalex.org/C39890363","wikidata":"https://www.wikidata.org/wiki/Q36108","display_name":"Generative grammar","level":2,"score":0.7376999855041504},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6990000009536743},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5940999984741211},{"id":"https://openalex.org/C167966045","wikidata":"https://www.wikidata.org/wiki/Q5532625","display_name":"Generative model","level":3,"score":0.4397999942302704},{"id":"https://openalex.org/C99726746","wikidata":"https://www.wikidata.org/wiki/Q906396","display_name":"Chemical space","level":3,"score":0.43959999084472656},{"id":"https://openalex.org/C184408114","wikidata":"https://www.wikidata.org/wiki/Q1502022","display_name":"Generative Design","level":3,"score":0.4016999900341034},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3758000135421753},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.3458999991416931},{"id":"https://openalex.org/C43540301","wikidata":"https://www.wikidata.org/wiki/Q689971","display_name":"Paradigm shift","level":2,"score":0.3310000002384186},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.3176000118255615},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.31299999356269836},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.3100999891757965},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.29989999532699585},{"id":"https://openalex.org/C191908910","wikidata":"https://www.wikidata.org/wiki/Q862838","display_name":"Synthetic biology","level":2,"score":0.2978000044822693},{"id":"https://openalex.org/C23963754","wikidata":"https://www.wikidata.org/wiki/Q4914729","display_name":"Bioconjugation","level":2,"score":0.2924000024795532},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.28690001368522644},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.27469998598098755},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.25940001010894775},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.2531000077724457}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.5c02234","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c02234","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:41253282","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41253282","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1539477904","display_name":null,"funder_award_id":"PLL 185683","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G190741868","display_name":null,"funder_award_id":"RGPIN-2021-04072","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G1940419168","display_name":null,"funder_award_id":"PJT204042","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G2157070843","display_name":null,"funder_award_id":"PJT 190272","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G2394759585","display_name":null,"funder_award_id":"CRC-2021-00482","funder_id":"https://openalex.org/F4320320994","funder_display_name":"Canada Research Chairs"},{"id":"https://openalex.org/G6620685283","display_name":null,"funder_award_id":"43481","funder_id":"https://openalex.org/F4320319952","funder_display_name":"Canada Foundation for Innovation"}],"funders":[{"id":"https://openalex.org/F4320319952","display_name":"Canada Foundation for Innovation","ror":"https://ror.org/000az4664"},{"id":"https://openalex.org/F4320320994","display_name":"Canada Research Chairs","ror":"https://ror.org/0517h6h17"},{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":158,"referenced_works":["https://openalex.org/W1583912456","https://openalex.org/W1954297438","https://openalex.org/W1993046136","https://openalex.org/W2033644031","https://openalex.org/W2037849836","https://openalex.org/W2043200406","https://openalex.org/W2054716083","https://openalex.org/W2061288239","https://openalex.org/W2069946152","https://openalex.org/W2076048958","https://openalex.org/W2080635178","https://openalex.org/W2096541451","https://openalex.org/W2106612397","https://openalex.org/W2108836992","https://openalex.org/W2110505462","https://openalex.org/W2114704115","https://openalex.org/W2116423958","https://openalex.org/W2144994958","https://openalex.org/W2153693853","https://openalex.org/W2163503894","https://openalex.org/W2170146596","https://openalex.org/W2176516200","https://openalex.org/W2177317049","https://openalex.org/W2258088715","https://openalex.org/W2529996553","https://openalex.org/W2558272290","https://openalex.org/W2578240541","https://openalex.org/W2610148085","https://openalex.org/W2611929679","https://openalex.org/W2613900957","https://openalex.org/W2736601468","https://openalex.org/W2739980134","https://openalex.org/W2767812299","https://openalex.org/W2798613236","https://openalex.org/W2801127413","https://openalex.org/W2946928580","https://openalex.org/W2962764565","https://openalex.org/W2963028280","https://openalex.org/W2963609389","https://openalex.org/W2963684088","https://openalex.org/W2985931096","https://openalex.org/W2999242200","https://openalex.org/W3003906593","https://openalex.org/W3007782243","https://openalex.org/W3023600056","https://openalex.org/W3024423177","https://openalex.org/W3034806393","https://openalex.org/W3036527662","https://openalex.org/W3042825269","https://openalex.org/W3048090444","https://openalex.org/W3081836708","https://openalex.org/W3082411326","https://openalex.org/W3087570960","https://openalex.org/W3096831136","https://openalex.org/W3116865743","https://openalex.org/W3121370741","https://openalex.org/W3157090352","https://openalex.org/W3177533410","https://openalex.org/W3177828909","https://openalex.org/W3186179742","https://openalex.org/W3201055938","https://openalex.org/W3202105508","https://openalex.org/W3206187363","https://openalex.org/W3209056694","https://openalex.org/W4210400672","https://openalex.org/W4213149192","https://openalex.org/W4213452490","https://openalex.org/W4226108318","https://openalex.org/W4251079740","https://openalex.org/W4280491725","https://openalex.org/W4281790889","https://openalex.org/W4283368696","https://openalex.org/W4283588088","https://openalex.org/W4286669150","https://openalex.org/W4287556187","https://openalex.org/W4287868031","https://openalex.org/W4288066876","https://openalex.org/W4293018672","https://openalex.org/W4296032638","https://openalex.org/W4297433310","https://openalex.org/W4297798428","https://openalex.org/W4298183953","https://openalex.org/W4298185360","https://openalex.org/W4300980371","https://openalex.org/W4302307901","https://openalex.org/W4303647933","https://openalex.org/W4311415873","https://openalex.org/W4313490671","https://openalex.org/W4319018654","https://openalex.org/W4320086883","https://openalex.org/W4320342349","https://openalex.org/W4322718191","https://openalex.org/W4323313055","https://openalex.org/W4327550249","https://openalex.org/W4327810158","https://openalex.org/W4362664882","https://openalex.org/W4366001157","https://openalex.org/W4375858802","https://openalex.org/W4378909195","https://openalex.org/W4382239767","https://openalex.org/W4383957026","https://openalex.org/W4386804497","https://openalex.org/W4387023440","https://openalex.org/W4387389678","https://openalex.org/W4387966128","https://openalex.org/W4388451909","https://openalex.org/W4388567308","https://openalex.org/W4388694364","https://openalex.org/W4391275557","https://openalex.org/W4391530977","https://openalex.org/W4392015344","https://openalex.org/W4392576359","https://openalex.org/W4392596618","https://openalex.org/W4393118201","https://openalex.org/W4393118916","https://openalex.org/W4393154902","https://openalex.org/W4396721167","https://openalex.org/W4399809828","https://openalex.org/W4399884514","https://openalex.org/W4400064522","https://openalex.org/W4400090810","https://openalex.org/W4401361818","https://openalex.org/W4402502678","https://openalex.org/W4403405969","https://openalex.org/W4403571009","https://openalex.org/W4403586429","https://openalex.org/W4403621992","https://openalex.org/W4403882547","https://openalex.org/W4404088309","https://openalex.org/W4404306486","https://openalex.org/W4404649388","https://openalex.org/W4404764874","https://openalex.org/W4405834118","https://openalex.org/W4406238010","https://openalex.org/W4406706843","https://openalex.org/W4406734170","https://openalex.org/W4407341180","https://openalex.org/W4407424308","https://openalex.org/W4407759642","https://openalex.org/W4407870725","https://openalex.org/W4408690205","https://openalex.org/W4409150232","https://openalex.org/W4409183464","https://openalex.org/W4410146170","https://openalex.org/W4410241805","https://openalex.org/W4410568075","https://openalex.org/W4410629037","https://openalex.org/W4411009874","https://openalex.org/W4411179305","https://openalex.org/W4412709685","https://openalex.org/W4413257724","https://openalex.org/W4413280105","https://openalex.org/W4415312334","https://openalex.org/W4415330057","https://openalex.org/W4415333727","https://openalex.org/W6910616346","https://openalex.org/W6948516311","https://openalex.org/W6967245842"],"related_works":[],"abstract_inverted_index":{"The":[0],"design":[1,202,209,274],"of":[2,47,55,114,125,160,182,199,241],"novel":[3,183],"molecules":[4,97],"underpins":[5],"advances":[6],"in":[7,33,94,186],"both":[8],"drug":[9],"discovery":[10,181],"and":[11,31,37,87,98,104,128,136,152,157,167,173,196,235,244,254,270],"biomaterials":[12],"engineering.":[13],"Traditional":[14],"approaches,":[15],"from":[16],"natural":[17],"product":[18],"isolation":[19],"to":[20,216,266],"high-throughput":[21],"screening,":[22],"have":[23],"delivered":[24],"important":[25],"therapeutics":[26],"but":[27],"remain":[28],"costly,":[29],"inefficient,":[30],"limited":[32],"exploring":[34],"the":[35,53,110,123,158,179,193],"chemical":[36],"biomolecular":[38],"space.":[39],"While":[40],"predictive":[41],"machine":[42],"learning":[43],"models":[44,89],"improved":[45],"aspects":[46],"discovery,":[48],"they":[49],"cannot":[50],"fully":[51],"address":[52],"complexity":[54],"modern":[56],"precision":[57],"medicine.":[58],"Generative":[59],"artificial":[60],"intelligence":[61],"(AI)":[62],"offers":[63],"a":[64],"paradigm":[65],"shift":[66],"by":[67,74],"enabling":[68,238],"de":[69],"novo":[70],"molecular":[71,118,142,149,201,208,273],"creation":[72],"guided":[73],"data-driven":[75],"optimization.":[76],"Architectures":[77],"such":[78,163,177],"as":[79,164,178],"variational":[80],"autoencoders,":[81],"generative":[82,115,126,200,207],"adversarial":[83],"networks,":[84],"normalizing":[85],"flows,":[86],"diffusion":[88],"now":[90],"demonstrate":[91],"unprecedented":[92],"capabilities":[93],"designing":[95],"small":[96],"macromolecules":[99],"that":[100,214],"satisfy":[101],"complex":[102],"physicochemical":[103,223],"biological":[105],"requirements.":[106],"This":[107],"review":[108],"surveys":[109],"rapidly":[111],"evolving":[112],"field":[113],"AI":[116,249],"for":[117,251],"design.":[119,143],"We":[120,144],"first":[121],"introduce":[122],"development":[124],"architectures":[127],"optimization":[129],"strategies,":[130],"focusing":[131],"on":[132],"how":[133],"sampling,":[134],"training,":[135],"postgeneration":[137],"techniques":[138],"improve":[139],"control":[140],"over":[141],"then":[145],"examine":[146],"applications":[147],"across":[148],"representations,":[150],"unconstrained":[151],"property-constrained":[153],"design,":[154],"conformation":[155],"modeling,":[156],"generation":[159],"large":[161],"biomolecules":[162],"proteins,":[165],"antibodies,":[166],"peptides.":[168],"Benchmarking":[169],"datasets,":[170],"evaluation":[171],"metrics,":[172],"real-world":[174],"case":[175],"studies,":[176],"AI-driven":[180],"antibiotics":[184],"demonstrated":[185],"vivo":[187],"efficacy":[188],"against":[189],"multidrug-resistant":[190],"infections,":[191],"illustrate":[192],"growing":[194],"maturity":[195],"translational":[197],"potential":[198],"approaches.":[203],"Despite":[204],"rapid":[205],"advances,":[206],"still":[210],"faces":[211],"critical":[212],"challenges":[213,263],"point":[215],"key":[217],"future":[218],"directions.":[219],"These":[220],"include":[221],"integrating":[222],"priors":[224],"through":[225],"differentiable":[226],"physical":[227],"models,":[228],"overcoming":[229],"data":[230],"scarcity":[231],"via":[232],"synthetic":[233],"augmentation":[234],"transfer":[236],"learning,":[237],"multimodal":[239],"fusion":[240],"structural,":[242],"omics,":[243],"phenotypic":[245],"data,":[246],"deploying":[247],"autonomous":[248],"agents":[250],"adaptive":[252],"decision-making,":[253],"optimizing":[255],"multiple":[256],"objectives":[257],"with":[258],"uncertainty-aware":[259],"strategies.":[260],"Addressing":[261],"these":[262],"could":[264],"lead":[265],"more":[267],"robust,":[268],"generalizable,":[269],"experimentally":[271],"aligned":[272],"systems.":[275]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1}],"updated_date":"2025-12-10T02:45:41.426853","created_date":"2025-11-19T00:00:00"}
