{"id":"https://openalex.org/W4415492166","doi":"https://doi.org/10.1021/acs.jcim.5c01950","title":"Geometry-Aware Protein\u2013Protein Binding Site Prediction Using Geometric Learning and Pretraining Strategies","display_name":"Geometry-Aware Protein\u2013Protein Binding Site Prediction Using Geometric Learning and Pretraining Strategies","publication_year":2025,"publication_date":"2025-10-23","ids":{"openalex":"https://openalex.org/W4415492166","doi":"https://doi.org/10.1021/acs.jcim.5c01950","pmid":"https://pubmed.ncbi.nlm.nih.gov/41131671"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.5c01950","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c01950","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111582654","display_name":"Wenhong Xu","orcid":null},"institutions":[{"id":"https://openalex.org/I4390039265","display_name":"PRG S&Tech (South Korea)","ror":"https://ror.org/02sr2ee22","country_code":null,"type":"company","lineage":["https://openalex.org/I4390039265"]},{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenhong Xu","raw_affiliation_strings":["College of Computer Science and Technology","Ocean University of China","College of Computer Science and Technology, Ocean University of China, Qingdao 266100, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology","institution_ids":["https://openalex.org/I4390039265"]},{"raw_affiliation_string":"Ocean University of China","institution_ids":["https://openalex.org/I59028903"]},{"raw_affiliation_string":"College of Computer Science and Technology, Ocean University of China, Qingdao 266100, China","institution_ids":["https://openalex.org/I59028903"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100758648","display_name":"Yu Xie","orcid":"https://orcid.org/0000-0003-2524-4231"},"institutions":[{"id":"https://openalex.org/I4390039265","display_name":"PRG S&Tech (South Korea)","ror":"https://ror.org/02sr2ee22","country_code":null,"type":"company","lineage":["https://openalex.org/I4390039265"]},{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuqian Xie","raw_affiliation_strings":["College of Computer Science and Technology","Ocean University of China","College of Computer Science and Technology, Ocean University of China, Qingdao 266100, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology","institution_ids":["https://openalex.org/I4390039265"]},{"raw_affiliation_string":"Ocean University of China","institution_ids":["https://openalex.org/I59028903"]},{"raw_affiliation_string":"College of Computer Science and Technology, Ocean University of China, Qingdao 266100, China","institution_ids":["https://openalex.org/I59028903"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Huasen Jiang","orcid":null},"institutions":[{"id":"https://openalex.org/I4390039265","display_name":"PRG S&Tech (South Korea)","ror":"https://ror.org/02sr2ee22","country_code":null,"type":"company","lineage":["https://openalex.org/I4390039265"]},{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huasen Jiang","raw_affiliation_strings":["College of Computer Science and Technology","Ocean University of China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology","institution_ids":["https://openalex.org/I4390039265"]},{"raw_affiliation_string":"Ocean University of China","institution_ids":["https://openalex.org/I59028903"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035575938","display_name":"Yu Fu","orcid":"https://orcid.org/0000-0001-8477-8888"},"institutions":[{"id":"https://openalex.org/I4390039265","display_name":"PRG S&Tech (South Korea)","ror":"https://ror.org/02sr2ee22","country_code":null,"type":"company","lineage":["https://openalex.org/I4390039265"]},{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Fu","raw_affiliation_strings":["College of Computer Science and Technology","Ocean University of China","College of Computer Science and Technology, Ocean University of China, Qingdao 266100, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology","institution_ids":["https://openalex.org/I4390039265"]},{"raw_affiliation_string":"Ocean University of China","institution_ids":["https://openalex.org/I59028903"]},{"raw_affiliation_string":"College of Computer Science and Technology, Ocean University of China, Qingdao 266100, China","institution_ids":["https://openalex.org/I59028903"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041155283","display_name":"Haobing Liu","orcid":"https://orcid.org/0000-0002-2546-3306"},"institutions":[{"id":"https://openalex.org/I4390039265","display_name":"PRG S&Tech (South Korea)","ror":"https://ror.org/02sr2ee22","country_code":null,"type":"company","lineage":["https://openalex.org/I4390039265"]},{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haobing Liu","raw_affiliation_strings":["College of Computer Science and Technology","Ocean University of China","College of Computer Science and Technology, Ocean University of China, Qingdao 266100, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology","institution_ids":["https://openalex.org/I4390039265"]},{"raw_affiliation_string":"Ocean University of China","institution_ids":["https://openalex.org/I59028903"]},{"raw_affiliation_string":"College of Computer Science and Technology, Ocean University of China, Qingdao 266100, China","institution_ids":["https://openalex.org/I59028903"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101905330","display_name":"Zhiqiang Wei","orcid":"https://orcid.org/0000-0002-2774-3168"},"institutions":[{"id":"https://openalex.org/I108688024","display_name":"Qingdao University","ror":"https://ror.org/021cj6z65","country_code":"CN","type":"education","lineage":["https://openalex.org/I108688024"]},{"id":"https://openalex.org/I4390039265","display_name":"PRG S&Tech (South Korea)","ror":"https://ror.org/02sr2ee22","country_code":null,"type":"company","lineage":["https://openalex.org/I4390039265"]},{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiqiang Wei","raw_affiliation_strings":["College of Computer Science and Technology","Ocean University of China","Qingdao University","College of Computer Science and Technology, Ocean University of China, Qingdao 266100, China","College of Computer Science and Technology, Qingdao University, Qingdao 266071, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology","institution_ids":["https://openalex.org/I4390039265"]},{"raw_affiliation_string":"Ocean University of China","institution_ids":["https://openalex.org/I59028903"]},{"raw_affiliation_string":"Qingdao University","institution_ids":["https://openalex.org/I108688024"]},{"raw_affiliation_string":"College of Computer Science and Technology, Ocean University of China, Qingdao 266100, China","institution_ids":["https://openalex.org/I59028903"]},{"raw_affiliation_string":"College of Computer Science and Technology, Qingdao University, Qingdao 266071, China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101822148","display_name":"Shugang Zhang","orcid":"https://orcid.org/0000-0002-9774-9709"},"institutions":[{"id":"https://openalex.org/I4390039265","display_name":"PRG S&Tech (South Korea)","ror":"https://ror.org/02sr2ee22","country_code":null,"type":"company","lineage":["https://openalex.org/I4390039265"]},{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shugang Zhang","raw_affiliation_strings":["College of Computer Science and Technology","Ocean University of China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology","institution_ids":["https://openalex.org/I4390039265"]},{"raw_affiliation_string":"Ocean University of China","institution_ids":["https://openalex.org/I59028903"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5101822148"],"corresponding_institution_ids":["https://openalex.org/I4390039265","https://openalex.org/I59028903"],"apc_list":null,"apc_paid":null,"fwci":1.6299,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.8588632,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"65","issue":"21","first_page":"12088","last_page":"12098"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.982200026512146,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9753999710083008,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/overfitting","display_name":"Overfitting","score":0.9391000270843506},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.4925999939441681},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4887000024318695},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.4724000096321106},{"id":"https://openalex.org/keywords/variance","display_name":"Variance (accounting)","score":0.43810001015663147},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.43209999799728394},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.42340001463890076},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.38359999656677246}],"concepts":[{"id":"https://openalex.org/C22019652","wikidata":"https://www.wikidata.org/wiki/Q331309","display_name":"Overfitting","level":3,"score":0.9391000270843506},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7121000289916992},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6948999762535095},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6527000069618225},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.4925999939441681},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4887000024318695},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.4724000096321106},{"id":"https://openalex.org/C196083921","wikidata":"https://www.wikidata.org/wiki/Q7915758","display_name":"Variance (accounting)","level":2,"score":0.43810001015663147},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.43209999799728394},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.42340001463890076},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.38359999656677246},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.34540000557899475},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3447999954223633},{"id":"https://openalex.org/C59404180","wikidata":"https://www.wikidata.org/wiki/Q17013334","display_name":"Feature learning","level":2,"score":0.32910001277923584},{"id":"https://openalex.org/C150899416","wikidata":"https://www.wikidata.org/wiki/Q1820378","display_name":"Transfer of learning","level":2,"score":0.32339999079704285},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.31929999589920044},{"id":"https://openalex.org/C51632099","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Training set","level":2,"score":0.3091000020503998},{"id":"https://openalex.org/C28006648","wikidata":"https://www.wikidata.org/wiki/Q6934509","display_name":"Multi-task learning","level":3,"score":0.30320000648498535},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.30300000309944153},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.28610000014305115},{"id":"https://openalex.org/C45942800","wikidata":"https://www.wikidata.org/wiki/Q245652","display_name":"Ensemble learning","level":2,"score":0.2842999994754791},{"id":"https://openalex.org/C116409475","wikidata":"https://www.wikidata.org/wiki/Q1385056","display_name":"External Data Representation","level":2,"score":0.2526000142097473},{"id":"https://openalex.org/C66153294","wikidata":"https://www.wikidata.org/wiki/Q899291","display_name":"CASP","level":4,"score":0.2517000138759613}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.5c01950","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c01950","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:41131671","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41131671","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W2009672036","https://openalex.org/W2072228739","https://openalex.org/W2141627824","https://openalex.org/W2155194485","https://openalex.org/W2570083522","https://openalex.org/W2944679105","https://openalex.org/W2955690154","https://openalex.org/W2971405760","https://openalex.org/W2990458240","https://openalex.org/W2992752586","https://openalex.org/W3009202743","https://openalex.org/W3080498684","https://openalex.org/W3081836708","https://openalex.org/W3128572085","https://openalex.org/W3177500196","https://openalex.org/W3197696221","https://openalex.org/W4210828082","https://openalex.org/W4220933909","https://openalex.org/W4288751878","https://openalex.org/W4309362167","https://openalex.org/W4309452766","https://openalex.org/W4360986234","https://openalex.org/W4379094944","https://openalex.org/W4382181479","https://openalex.org/W4389076414","https://openalex.org/W4390563867","https://openalex.org/W4391291188","https://openalex.org/W4391539371","https://openalex.org/W4391996022","https://openalex.org/W4394009837","https://openalex.org/W4400453846","https://openalex.org/W4407035168","https://openalex.org/W4408545883"],"related_works":[],"abstract_inverted_index":{"Accurate":[0],"prediction":[1,82],"of":[2,7,26,45,98,128,187,197],"protein-protein":[3],"interaction":[4],"sites":[5,28,174],"is":[6,90,122],"great":[8],"importance":[9],"for":[10,23,210],"understanding":[11],"complicated":[12],"biological":[13],"processes":[14],"and":[15,31,56,146,155,172,189,220],"developing":[16],"targeted":[17],"drugs.":[18],"However,":[19],"conventional":[20,110],"experimental":[21],"measurements":[22],"the":[24,35,78,94,126,199],"identification":[25],"binding":[27],"are":[29],"time-consuming":[30],"labor":[32],"intensive,":[33],"while":[34],"current":[36],"computational":[37],"solutions":[38],"have":[39],"their":[40],"drawbacks":[41],"including":[42,141],"inadequate":[43],"modeling":[44],"three-dimensional":[46,95],"structural":[47,96],"features,":[48],"overfitting":[49,129],"susceptibility":[50],"due":[51],"to":[52,92,102,109,124,130,151],"limited":[53,131],"training":[54],"data,":[55],"high":[57,153],"variance":[58,154],"in":[59,77,207,217],"model":[60],"performance.":[61],"Motivated":[62],"by":[63],"these":[64],"issues,":[65],"we":[66,135],"propose":[67],"<b>GeoPPIS</b>,":[68],"an":[69,147],"advanced":[70],"<b>GEO</b>metry-aware":[71],"approach":[72],"that":[73,166,176],"achieves":[74],"state-of-the-art":[75,179],"performance":[76,180],"<b>P</b>rotein-<b>P</b>rotein":[79],"<b>I</b>nteraction":[80],"<b>S</b>ite":[81],"task.":[83],"Particularly,":[84],"a":[85,103,116,142,194,205],"geometric":[86,200],"graph":[87],"learning":[88,120,149],"module":[89,145,150],"introduced":[91,137],"capture":[93],"characteristics":[97],"proteins,":[99],"which":[100],"contributes":[101],"more":[104,168],"comprehensive":[105],"protein":[106],"representation":[107],"compared":[108],"sequence":[111],"or":[112],"graph-based":[113],"approaches.":[114],"Besides,":[115],"two-stage":[117],"hybrid":[118],"transfer":[119],"strategy":[121],"devised":[123],"alleviate":[125],"problem":[127],"data.":[132],"In":[133],"addition,":[134],"also":[136],"two":[138,162],"postprediction":[139],"strategies":[140],"density-based":[143],"clustering":[144],"ensemble":[148],"reduce":[152],"achieve":[156],"stable":[157],"prediction.":[158],"Extensive":[159],"evaluations":[160],"on":[161,202],"benchmark":[163],"data":[164],"sets":[165],"involve":[167],"than":[169],"370":[170],"proteins":[171],"78,000":[173],"show":[175],"GeoPPIS":[177],"achieved":[178],"among":[181],"11":[182],"baseline":[183],"models":[184],"with":[185],"accuracy":[186],"0.857":[188],"0.860.":[190],"This":[191],"research":[192],"provides":[193],"feasible":[195],"way":[196],"incorporating":[198],"information":[201],"protein,":[203],"offering":[204],"reliable":[206],"silico":[208],"tool":[209],"robust":[211],"PPIS":[212],"prediction,":[213],"ultimately":[214],"facilitating":[215],"advancements":[216],"precision":[218],"medicine":[219],"drug":[221],"developments.":[222]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-03-27T14:29:43.386196","created_date":"2025-10-24T00:00:00"}
