{"id":"https://openalex.org/W4414594966","doi":"https://doi.org/10.1021/acs.jcim.5c01774","title":"MEMO-Stab2: Multi-View Sequence-Based Deep Learning Framework for Predicting Mutation-Induced Stability Changes in Transmembrane Proteins","display_name":"MEMO-Stab2: Multi-View Sequence-Based Deep Learning Framework for Predicting Mutation-Induced Stability Changes in Transmembrane Proteins","publication_year":2025,"publication_date":"2025-09-29","ids":{"openalex":"https://openalex.org/W4414594966","doi":"https://doi.org/10.1021/acs.jcim.5c01774","pmid":"https://pubmed.ncbi.nlm.nih.gov/41021316"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.5c01774","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c01774","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004423488","display_name":"Yihang Bao","orcid":"https://orcid.org/0000-0002-8431-3412"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I2802690428","display_name":"Shanghai Mental Health Center","ror":"https://ror.org/05bd2wa15","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802690428"]},{"id":"https://openalex.org/I4210135459","display_name":"United Imaging Healthcare (China)","ror":"https://ror.org/03qqw3m37","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210135459"]},{"id":"https://openalex.org/I4210153682","display_name":"Intelligent Health (United Kingdom)","ror":"https://ror.org/0576zak10","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210153682"]}],"countries":["CN","GB"],"is_corresponding":false,"raw_author_name":"Yihang Bao","raw_affiliation_strings":["Shanghai Gener Arfysica Intelligent Healthcare & Brain Science Research Institute","Shanghai Jiao Tong University","Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, School of Biomedical Engineering","Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai 200030, China","Shanghai Gener Arfysica Intelligent Healthcare & Brain Science Research Institute, Shanghai 200030, China"],"raw_orcid":"https://orcid.org/0000-0002-8431-3412","affiliations":[{"raw_affiliation_string":"Shanghai Gener Arfysica Intelligent Healthcare & Brain Science Research Institute","institution_ids":["https://openalex.org/I4210153682"]},{"raw_affiliation_string":"Shanghai Jiao Tong University","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, School of Biomedical Engineering","institution_ids":["https://openalex.org/I2802690428"]},{"raw_affiliation_string":"Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai 200030, China","institution_ids":["https://openalex.org/I2802690428","https://openalex.org/I183067930"]},{"raw_affiliation_string":"Shanghai Gener Arfysica Intelligent Healthcare & Brain Science Research Institute, Shanghai 200030, China","institution_ids":["https://openalex.org/I4210135459"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044574026","display_name":"Zhe Liu","orcid":"https://orcid.org/0000-0002-7685-5457"},"institutions":[{"id":"https://openalex.org/I143593769","display_name":"East China University of Science and Technology","ror":"https://ror.org/01vyrm377","country_code":"CN","type":"education","lineage":["https://openalex.org/I143593769"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhe Liu","raw_affiliation_strings":["Department of Computer Science and Engineering","East China University of Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering","institution_ids":[]},{"raw_affiliation_string":"East China University of Science and Technology","institution_ids":["https://openalex.org/I143593769"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100626743","display_name":"Hui Jin","orcid":"https://orcid.org/0000-0002-7154-5628"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I2802690428","display_name":"Shanghai Mental Health Center","ror":"https://ror.org/05bd2wa15","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802690428"]},{"id":"https://openalex.org/I4210135459","display_name":"United Imaging Healthcare (China)","ror":"https://ror.org/03qqw3m37","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210135459"]},{"id":"https://openalex.org/I4210153682","display_name":"Intelligent Health (United Kingdom)","ror":"https://ror.org/0576zak10","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210153682"]}],"countries":["CN","GB"],"is_corresponding":false,"raw_author_name":"Hui Jin","raw_affiliation_strings":["Shanghai Gener Arfysica Intelligent Healthcare & Brain Science Research Institute","Shanghai Jiao Tong University","Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, School of Biomedical Engineering","Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai 200030, China","Shanghai Gener Arfysica Intelligent Healthcare & Brain Science Research Institute, Shanghai 200030, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shanghai Gener Arfysica Intelligent Healthcare & Brain Science Research Institute","institution_ids":["https://openalex.org/I4210153682"]},{"raw_affiliation_string":"Shanghai Jiao Tong University","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, School of Biomedical Engineering","institution_ids":["https://openalex.org/I2802690428"]},{"raw_affiliation_string":"Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai 200030, China","institution_ids":["https://openalex.org/I2802690428","https://openalex.org/I183067930"]},{"raw_affiliation_string":"Shanghai Gener Arfysica Intelligent Healthcare & Brain Science Research Institute, Shanghai 200030, China","institution_ids":["https://openalex.org/I4210135459"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100452702","display_name":"Han Wang","orcid":"https://orcid.org/0000-0002-4302-1886"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Han Wang","raw_affiliation_strings":["Northeast Normal University","School of Information Science and Technology"],"raw_orcid":"https://orcid.org/0000-0002-4302-1886","affiliations":[{"raw_affiliation_string":"Northeast Normal University","institution_ids":["https://openalex.org/I184983240"]},{"raw_affiliation_string":"School of Information Science and Technology","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019386958","display_name":"Weidi Wang","orcid":"https://orcid.org/0000-0002-6312-0689"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I2802690428","display_name":"Shanghai Mental Health Center","ror":"https://ror.org/05bd2wa15","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802690428"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Weidi Wang","raw_affiliation_strings":["Shanghai Jiao Tong University","Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, School of Biomedical Engineering","Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai 200030, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shanghai Jiao Tong University","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, School of Biomedical Engineering","institution_ids":["https://openalex.org/I2802690428"]},{"raw_affiliation_string":"Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai 200030, China","institution_ids":["https://openalex.org/I2802690428","https://openalex.org/I183067930"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047609717","display_name":"Guan Ning Lin","orcid":"https://orcid.org/0000-0001-9496-0149"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I2802690428","display_name":"Shanghai Mental Health Center","ror":"https://ror.org/05bd2wa15","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802690428"]},{"id":"https://openalex.org/I4210110242","display_name":"Digital Science (United States)","ror":"https://ror.org/020h4b682","country_code":"US","type":"company","lineage":["https://openalex.org/I4210110242","https://openalex.org/I4210112888","https://openalex.org/I4210118830"]},{"id":"https://openalex.org/I4210153682","display_name":"Intelligent Health (United Kingdom)","ror":"https://ror.org/0576zak10","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210153682"]}],"countries":["CN","GB","US"],"is_corresponding":true,"raw_author_name":"Guan Ning Lin","raw_affiliation_strings":["Engineering Research Center of Digital Medicine of the Ministry of Education","Shanghai Gener Arfysica Intelligent Healthcare & Brain Science Research Institute","Shanghai Jiao Tong University","Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, School of Biomedical Engineering","Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai 200030, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Engineering Research Center of Digital Medicine of the Ministry of Education","institution_ids":["https://openalex.org/I4210110242"]},{"raw_affiliation_string":"Shanghai Gener Arfysica Intelligent Healthcare & Brain Science Research Institute","institution_ids":["https://openalex.org/I4210153682"]},{"raw_affiliation_string":"Shanghai Jiao Tong University","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, School of Biomedical Engineering","institution_ids":["https://openalex.org/I2802690428"]},{"raw_affiliation_string":"Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai 200030, China","institution_ids":["https://openalex.org/I2802690428","https://openalex.org/I183067930"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5019386958","https://openalex.org/A5047609717"],"corresponding_institution_ids":["https://openalex.org/I183067930","https://openalex.org/I2802690428","https://openalex.org/I4210110242","https://openalex.org/I4210153682"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.22082107,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"65","issue":"19","first_page":"10772","last_page":"10782"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transmembrane-domain","display_name":"Transmembrane domain","score":0.6144999861717224},{"id":"https://openalex.org/keywords/transmembrane-protein","display_name":"Transmembrane protein","score":0.6057999730110168},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.5735999941825867},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.5601000189781189},{"id":"https://openalex.org/keywords/stability","display_name":"Stability (learning theory)","score":0.548799991607666},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5450999736785889},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.5210000276565552},{"id":"https://openalex.org/keywords/generalization","display_name":"Generalization","score":0.49320000410079956},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4821999967098236},{"id":"https://openalex.org/keywords/limiting","display_name":"Limiting","score":0.4634000062942505}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6520000100135803},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6370999813079834},{"id":"https://openalex.org/C118892022","wikidata":"https://www.wikidata.org/wiki/Q7834587","display_name":"Transmembrane domain","level":3,"score":0.6144999861717224},{"id":"https://openalex.org/C24530287","wikidata":"https://www.wikidata.org/wiki/Q424204","display_name":"Transmembrane protein","level":3,"score":0.6057999730110168},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.5735999941825867},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.5601000189781189},{"id":"https://openalex.org/C112972136","wikidata":"https://www.wikidata.org/wiki/Q7595718","display_name":"Stability (learning theory)","level":2,"score":0.548799991607666},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5450999736785889},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.5210000276565552},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4975999891757965},{"id":"https://openalex.org/C177148314","wikidata":"https://www.wikidata.org/wiki/Q170084","display_name":"Generalization","level":2,"score":0.49320000410079956},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4821999967098236},{"id":"https://openalex.org/C188198153","wikidata":"https://www.wikidata.org/wiki/Q1613840","display_name":"Limiting","level":2,"score":0.4634000062942505},{"id":"https://openalex.org/C40506919","wikidata":"https://www.wikidata.org/wiki/Q7452469","display_name":"Sequence learning","level":2,"score":0.4629000127315521},{"id":"https://openalex.org/C152769699","wikidata":"https://www.wikidata.org/wiki/Q410814","display_name":"Protein design","level":3,"score":0.3968999981880188},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3871999979019165},{"id":"https://openalex.org/C2988375501","wikidata":"https://www.wikidata.org/wiki/Q847556","display_name":"Protein stability","level":2,"score":0.373199999332428},{"id":"https://openalex.org/C176944494","wikidata":"https://www.wikidata.org/wiki/Q1415380","display_name":"Point mutation","level":4,"score":0.3718999922275543},{"id":"https://openalex.org/C48372109","wikidata":"https://www.wikidata.org/wiki/Q3913","display_name":"Binary number","level":2,"score":0.364300012588501},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.3562999963760376},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.35429999232292175},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3538999855518341},{"id":"https://openalex.org/C144647389","wikidata":"https://www.wikidata.org/wiki/Q423042","display_name":"Membrane protein","level":3,"score":0.35350000858306885},{"id":"https://openalex.org/C61727976","wikidata":"https://www.wikidata.org/wiki/Q751748","display_name":"Epistasis","level":3,"score":0.34940001368522644},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.3456000089645386},{"id":"https://openalex.org/C66905080","wikidata":"https://www.wikidata.org/wiki/Q17005494","display_name":"Binary classification","level":3,"score":0.33379998803138733},{"id":"https://openalex.org/C171897839","wikidata":"https://www.wikidata.org/wiki/Q417841","display_name":"Protein family","level":3,"score":0.3149999976158142},{"id":"https://openalex.org/C147816474","wikidata":"https://www.wikidata.org/wiki/Q169525","display_name":"Protein engineering","level":3,"score":0.3093999922275543},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.3093000054359436},{"id":"https://openalex.org/C2780505938","wikidata":"https://www.wikidata.org/wiki/Q17093282","display_name":"Unavailability","level":2,"score":0.29660001397132874},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.2863999903202057},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.28049999475479126}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.5c01774","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c01774","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:41021316","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41021316","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4551156357","display_name":null,"funder_award_id":"2022ZD0209100","funder_id":"https://openalex.org/F4320329860","funder_display_name":"National Science and Technology Major Project"},{"id":"https://openalex.org/G5945500755","display_name":null,"funder_award_id":"23X010302269","funder_id":"https://openalex.org/F4320322999","funder_display_name":"Shanghai Jiao Tong University"},{"id":"https://openalex.org/G6578095893","display_name":null,"funder_award_id":"25ZR1401167","funder_id":"https://openalex.org/F4320309612","funder_display_name":"Natural Science Foundation of Shanghai"}],"funders":[{"id":"https://openalex.org/F4320309612","display_name":"Natural Science Foundation of Shanghai","ror":null},{"id":"https://openalex.org/F4320322999","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04"},{"id":"https://openalex.org/F4320329860","display_name":"National Science and Technology Major Project","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":57,"referenced_works":["https://openalex.org/W1965744080","https://openalex.org/W1988625445","https://openalex.org/W1992888813","https://openalex.org/W2003890287","https://openalex.org/W2020448616","https://openalex.org/W2031553026","https://openalex.org/W2064488723","https://openalex.org/W2087424776","https://openalex.org/W2092387745","https://openalex.org/W2103459989","https://openalex.org/W2105537627","https://openalex.org/W2110336007","https://openalex.org/W2111326065","https://openalex.org/W2121519777","https://openalex.org/W2136513422","https://openalex.org/W2153457180","https://openalex.org/W2324374958","https://openalex.org/W2335773464","https://openalex.org/W2376573086","https://openalex.org/W2515590865","https://openalex.org/W2606439133","https://openalex.org/W2615841538","https://openalex.org/W2767657273","https://openalex.org/W2789132965","https://openalex.org/W2801491392","https://openalex.org/W2912290085","https://openalex.org/W2920817727","https://openalex.org/W3028862763","https://openalex.org/W3043805872","https://openalex.org/W3086313594","https://openalex.org/W3093556707","https://openalex.org/W3109312535","https://openalex.org/W3117622225","https://openalex.org/W3119533938","https://openalex.org/W3125679241","https://openalex.org/W3156303331","https://openalex.org/W3171481040","https://openalex.org/W3177500196","https://openalex.org/W3201906559","https://openalex.org/W4206007286","https://openalex.org/W4229331784","https://openalex.org/W4281993476","https://openalex.org/W4290546426","https://openalex.org/W4294275581","https://openalex.org/W4313430582","https://openalex.org/W4327550249","https://openalex.org/W4366163632","https://openalex.org/W4376612841","https://openalex.org/W4379600237","https://openalex.org/W4388486442","https://openalex.org/W4389616450","https://openalex.org/W4391308485","https://openalex.org/W4392885247","https://openalex.org/W4401900858","https://openalex.org/W4403770916","https://openalex.org/W4406087610","https://openalex.org/W4406261053"],"related_works":[],"abstract_inverted_index":{"threshold":[0],"of":[1,89],"0.4":[2],"kcal/mol.":[3],"The":[4],"model":[5,74],"integrates":[6],"multiview":[7],"features":[8],"within":[9],"a":[10,71,142],"Transformer-based":[11],"architecture,":[12],"utilizing":[13],"embeddings":[14],"from":[15,48],"multiple":[16,38],"pretrained":[17],"protein":[18,109,150],"language":[19],"models":[20],"(PLMs)":[21],"and":[22,45,56,70,101,115,128,145,153],"PLM-based":[23],"structural":[24,46],"predictions.":[25],"By":[26],"leveraging":[27],"PLMs,":[28],"it":[29,77],"operates":[30],"without":[31],"requiring":[32],"experimental":[33],"3D":[34],"structures":[35],"or":[36],"explicit":[37],"sequence":[39,52,113],"alignments,":[40],"implicitly":[41],"capturing":[42],"both":[43],"evolutionary":[44],"contexts":[47,122],"the":[49,81,98,125],"amino":[50],"acid":[51],"alone.":[53],"Across":[54],"internal":[55,93],"external":[57],"transmembrane":[58,126,149],"mutation":[59,137],"data":[60],"sets,":[61],"MEMO-Stab2":[62],"consistently":[63],"outperforms":[64],"existing":[65],"tools,":[66],"including":[67],"specialized":[68],"predictors":[69],"state-of-the-art":[72],"general":[73],"even":[75],"after":[76],"was":[78],"fine-tuned":[79],"on":[80,91],"same":[82],"domain-specific":[83],"data,":[84],"achieving":[85],"an":[86,92],"F1":[87],"score":[88],"0.92":[90],"benchmark.":[94],"Further":[95],"analyses":[96],"confirm":[97],"model's":[99],"robustness":[100],"specificity.":[102],"It":[103],"demonstrates":[104],"strong":[105],"generalization":[106],"across":[107],"diverse":[108],"families":[110],"with":[111],"low":[112],"identity":[114],"shows":[116],"superior":[117],"performance":[118],"in":[119,139],"challenging":[120],"biophysical":[121],"such":[123],"as":[124],"core":[127],"interfacial":[129],"regions.":[130],"Its":[131],"validated":[132],"computational":[133],"efficiency":[134],"enables":[135],"large-scale":[136],"screening":[138],"minutes,":[140],"offering":[141],"practical,":[143],"robust,":[144],"powerful":[146],"tool":[147],"for":[148],"variant":[151],"evaluation":[152],"engineering.":[154]},"counts_by_year":[],"updated_date":"2026-04-28T14:05:53.105641","created_date":"2025-10-10T00:00:00"}
