{"id":"https://openalex.org/W4415192653","doi":"https://doi.org/10.1021/acs.jcim.5c01588","title":"NRIP: A Model for NNRTI\u2013RT Interaction Prediction and Enabling Virtual Screening of Anti-HIV Natural Compounds","display_name":"NRIP: A Model for NNRTI\u2013RT Interaction Prediction and Enabling Virtual Screening of Anti-HIV Natural Compounds","publication_year":2025,"publication_date":"2025-10-14","ids":{"openalex":"https://openalex.org/W4415192653","doi":"https://doi.org/10.1021/acs.jcim.5c01588","pmid":"https://pubmed.ncbi.nlm.nih.gov/41085466"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.5c01588","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c01588","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061840111","display_name":"Jingxuan Qiu","orcid":"https://orcid.org/0000-0001-8420-4593"},"institutions":[{"id":"https://openalex.org/I148128674","display_name":"University of Shanghai for Science and Technology","ror":"https://ror.org/00ay9v204","country_code":"CN","type":"education","lineage":["https://openalex.org/I148128674"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingxuan Qiu","raw_affiliation_strings":["School of Health Science and Engineering","University of Shanghai for Science and Technology","School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Health Science and Engineering","institution_ids":[]},{"raw_affiliation_string":"University of Shanghai for Science and Technology","institution_ids":["https://openalex.org/I148128674"]},{"raw_affiliation_string":"School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China","institution_ids":["https://openalex.org/I148128674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100779763","display_name":"Yuxi Zhang","orcid":"https://orcid.org/0000-0001-5368-1346"},"institutions":[{"id":"https://openalex.org/I148128674","display_name":"University of Shanghai for Science and Technology","ror":"https://ror.org/00ay9v204","country_code":"CN","type":"education","lineage":["https://openalex.org/I148128674"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuxi Zhang","raw_affiliation_strings":["School of Health Science and Engineering","University of Shanghai for Science and Technology","School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Health Science and Engineering","institution_ids":[]},{"raw_affiliation_string":"University of Shanghai for Science and Technology","institution_ids":["https://openalex.org/I148128674"]},{"raw_affiliation_string":"School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China","institution_ids":["https://openalex.org/I148128674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005275890","display_name":"Mengqi Hu","orcid":"https://orcid.org/0000-0001-5814-3045"},"institutions":[{"id":"https://openalex.org/I133868755","display_name":"Shanghai Medical College of Fudan University","ror":"https://ror.org/01zntxs11","country_code":"CN","type":"education","lineage":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mengdie Hu","raw_affiliation_strings":["Fudan University","Institute of Clinical Science, Zhongshan Hospital, Shanghai Institute of Infectious Disease and Biosecurity, and Intelligent Medicine Institute, Shanghai Medical College","Institute of Clinical Science, Zhongshan Hospital, Shanghai Institute of Infectious Disease and Biosecurity, and Intelligent Medicine Institute, Shanghai Medical College, Fudan University, Shanghai 200032, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fudan University","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Institute of Clinical Science, Zhongshan Hospital, Shanghai Institute of Infectious Disease and Biosecurity, and Intelligent Medicine Institute, Shanghai Medical College","institution_ids":["https://openalex.org/I133868755"]},{"raw_affiliation_string":"Institute of Clinical Science, Zhongshan Hospital, Shanghai Institute of Infectious Disease and Biosecurity, and Intelligent Medicine Institute, Shanghai Medical College, Fudan University, Shanghai 200032, China","institution_ids":["https://openalex.org/I133868755"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100632712","display_name":"Zhiyu Huang","orcid":"https://orcid.org/0000-0002-4516-1946"},"institutions":[{"id":"https://openalex.org/I148128674","display_name":"University of Shanghai for Science and Technology","ror":"https://ror.org/00ay9v204","country_code":"CN","type":"education","lineage":["https://openalex.org/I148128674"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiyu Huang","raw_affiliation_strings":["School of Health Science and Engineering","University of Shanghai for Science and Technology","School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Health Science and Engineering","institution_ids":[]},{"raw_affiliation_string":"University of Shanghai for Science and Technology","institution_ids":["https://openalex.org/I148128674"]},{"raw_affiliation_string":"School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China","institution_ids":["https://openalex.org/I148128674"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Zhongxu Han","orcid":null},"institutions":[{"id":"https://openalex.org/I148128674","display_name":"University of Shanghai for Science and Technology","ror":"https://ror.org/00ay9v204","country_code":"CN","type":"education","lineage":["https://openalex.org/I148128674"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhongxu Han","raw_affiliation_strings":["School of Health Science and Engineering","University of Shanghai for Science and Technology","School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Health Science and Engineering","institution_ids":[]},{"raw_affiliation_string":"University of Shanghai for Science and Technology","institution_ids":["https://openalex.org/I148128674"]},{"raw_affiliation_string":"School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China","institution_ids":["https://openalex.org/I148128674"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jile Wan","orcid":null},"institutions":[{"id":"https://openalex.org/I148128674","display_name":"University of Shanghai for Science and Technology","ror":"https://ror.org/00ay9v204","country_code":"CN","type":"education","lineage":["https://openalex.org/I148128674"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jile Wan","raw_affiliation_strings":["School of Health Science and Engineering","University of Shanghai for Science and Technology","School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Health Science and Engineering","institution_ids":[]},{"raw_affiliation_string":"University of Shanghai for Science and Technology","institution_ids":["https://openalex.org/I148128674"]},{"raw_affiliation_string":"School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China","institution_ids":["https://openalex.org/I148128674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048899906","display_name":"Yiwen Wei","orcid":"https://orcid.org/0000-0002-8216-6156"},"institutions":[{"id":"https://openalex.org/I148128674","display_name":"University of Shanghai for Science and Technology","ror":"https://ror.org/00ay9v204","country_code":"CN","type":"education","lineage":["https://openalex.org/I148128674"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiwen Wei","raw_affiliation_strings":["School of Health Science and Engineering","University of Shanghai for Science and Technology","School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Health Science and Engineering","institution_ids":[]},{"raw_affiliation_string":"University of Shanghai for Science and Technology","institution_ids":["https://openalex.org/I148128674"]},{"raw_affiliation_string":"School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China","institution_ids":["https://openalex.org/I148128674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100584468","display_name":"Junting Xie","orcid":null},"institutions":[{"id":"https://openalex.org/I148128674","display_name":"University of Shanghai for Science and Technology","ror":"https://ror.org/00ay9v204","country_code":"CN","type":"education","lineage":["https://openalex.org/I148128674"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junting Xie","raw_affiliation_strings":["School of Health Science and Engineering","University of Shanghai for Science and Technology","School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Health Science and Engineering","institution_ids":[]},{"raw_affiliation_string":"University of Shanghai for Science and Technology","institution_ids":["https://openalex.org/I148128674"]},{"raw_affiliation_string":"School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China","institution_ids":["https://openalex.org/I148128674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088451140","display_name":"Dong Zhang","orcid":"https://orcid.org/0000-0001-8186-4692"},"institutions":[{"id":"https://openalex.org/I148128674","display_name":"University of Shanghai for Science and Technology","ror":"https://ror.org/00ay9v204","country_code":"CN","type":"education","lineage":["https://openalex.org/I148128674"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dong Zhang","raw_affiliation_strings":["School of Health Science and Engineering","University of Shanghai for Science and Technology","School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Health Science and Engineering","institution_ids":[]},{"raw_affiliation_string":"University of Shanghai for Science and Technology","institution_ids":["https://openalex.org/I148128674"]},{"raw_affiliation_string":"School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China","institution_ids":["https://openalex.org/I148128674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103060588","display_name":"Xiaochuan Luo","orcid":"https://orcid.org/0000-0001-6886-1649"},"institutions":[{"id":"https://openalex.org/I148128674","display_name":"University of Shanghai for Science and Technology","ror":"https://ror.org/00ay9v204","country_code":"CN","type":"education","lineage":["https://openalex.org/I148128674"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaochuan Luo","raw_affiliation_strings":["School of Health Science and Engineering","University of Shanghai for Science and Technology","School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Health Science and Engineering","institution_ids":[]},{"raw_affiliation_string":"University of Shanghai for Science and Technology","institution_ids":["https://openalex.org/I148128674"]},{"raw_affiliation_string":"School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China","institution_ids":["https://openalex.org/I148128674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101687637","display_name":"Haoxiang Wang","orcid":"https://orcid.org/0000-0001-7255-4641"},"institutions":[{"id":"https://openalex.org/I148128674","display_name":"University of Shanghai for Science and Technology","ror":"https://ror.org/00ay9v204","country_code":"CN","type":"education","lineage":["https://openalex.org/I148128674"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haoxiang Wang","raw_affiliation_strings":["School of Health Science and Engineering","University of Shanghai for Science and Technology","School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Health Science and Engineering","institution_ids":[]},{"raw_affiliation_string":"University of Shanghai for Science and Technology","institution_ids":["https://openalex.org/I148128674"]},{"raw_affiliation_string":"School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China","institution_ids":["https://openalex.org/I148128674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006931854","display_name":"Dongpo Xu","orcid":"https://orcid.org/0000-0002-9311-9152"},"institutions":[{"id":"https://openalex.org/I148128674","display_name":"University of Shanghai for Science and Technology","ror":"https://ror.org/00ay9v204","country_code":"CN","type":"education","lineage":["https://openalex.org/I148128674"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dongpo Xu","raw_affiliation_strings":["School of Health Science and Engineering","University of Shanghai for Science and Technology","School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China"],"raw_orcid":"https://orcid.org/0000-0002-9311-9152","affiliations":[{"raw_affiliation_string":"School of Health Science and Engineering","institution_ids":[]},{"raw_affiliation_string":"University of Shanghai for Science and Technology","institution_ids":["https://openalex.org/I148128674"]},{"raw_affiliation_string":"School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China","institution_ids":["https://openalex.org/I148128674"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029170473","display_name":"Tianyi Qiu","orcid":"https://orcid.org/0000-0003-2619-0298"},"institutions":[{"id":"https://openalex.org/I133868755","display_name":"Shanghai Medical College of Fudan University","ror":"https://ror.org/01zntxs11","country_code":"CN","type":"education","lineage":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Tianyi Qiu","raw_affiliation_strings":["Fudan University","Institute of Clinical Science, Zhongshan Hospital, Shanghai Institute of Infectious Disease and Biosecurity, and Intelligent Medicine Institute, Shanghai Medical College","Institute of Clinical Science, Zhongshan Hospital, Shanghai Institute of Infectious Disease and Biosecurity, and Intelligent Medicine Institute, Shanghai Medical College, Fudan University, Shanghai 200032, China"],"raw_orcid":"https://orcid.org/0000-0003-2619-0298","affiliations":[{"raw_affiliation_string":"Fudan University","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Institute of Clinical Science, Zhongshan Hospital, Shanghai Institute of Infectious Disease and Biosecurity, and Intelligent Medicine Institute, Shanghai Medical College","institution_ids":["https://openalex.org/I133868755"]},{"raw_affiliation_string":"Institute of Clinical Science, Zhongshan Hospital, Shanghai Institute of Infectious Disease and Biosecurity, and Intelligent Medicine Institute, Shanghai Medical College, Fudan University, Shanghai 200032, China","institution_ids":["https://openalex.org/I133868755"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5029170473"],"corresponding_institution_ids":["https://openalex.org/I133868755","https://openalex.org/I24943067"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.29381772,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"65","issue":"20","first_page":"11439","last_page":"11453"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9660999774932861,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9660999774932861,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9563999772071838,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.7116000056266785},{"id":"https://openalex.org/keywords/boosting","display_name":"Boosting (machine learning)","score":0.5473999977111816},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.476500004529953},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.47620001435279846},{"id":"https://openalex.org/keywords/reverse-transcriptase","display_name":"Reverse transcriptase","score":0.4715999960899353},{"id":"https://openalex.org/keywords/human-immunodeficiency-virus","display_name":"Human immunodeficiency virus (HIV)","score":0.4408000111579895},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.43779999017715454},{"id":"https://openalex.org/keywords/chemical-similarity","display_name":"Chemical similarity","score":0.41519999504089355},{"id":"https://openalex.org/keywords/decoy","display_name":"Decoy","score":0.4129999876022339},{"id":"https://openalex.org/keywords/drug-development","display_name":"Drug development","score":0.39480000734329224}],"concepts":[{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.7116000056266785},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6574000120162964},{"id":"https://openalex.org/C46686674","wikidata":"https://www.wikidata.org/wiki/Q466303","display_name":"Boosting (machine learning)","level":2,"score":0.5473999977111816},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5273000001907349},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.48339998722076416},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.476500004529953},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.47620001435279846},{"id":"https://openalex.org/C156719811","wikidata":"https://www.wikidata.org/wiki/Q28774","display_name":"Reverse transcriptase","level":4,"score":0.4715999960899353},{"id":"https://openalex.org/C3013748606","wikidata":"https://www.wikidata.org/wiki/Q15787","display_name":"Human immunodeficiency virus (HIV)","level":2,"score":0.4408000111579895},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.43779999017715454},{"id":"https://openalex.org/C24259465","wikidata":"https://www.wikidata.org/wiki/Q2272153","display_name":"Chemical similarity","level":3,"score":0.41519999504089355},{"id":"https://openalex.org/C2779179475","wikidata":"https://www.wikidata.org/wiki/Q3545649","display_name":"Decoy","level":3,"score":0.4129999876022339},{"id":"https://openalex.org/C64903051","wikidata":"https://www.wikidata.org/wiki/Q2198549","display_name":"Drug development","level":3,"score":0.39480000734329224},{"id":"https://openalex.org/C2989108626","wikidata":"https://www.wikidata.org/wiki/Q904407","display_name":"Drug target","level":2,"score":0.373199999332428},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.36169999837875366},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.3596999943256378},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.35580000281333923},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3425999879837036},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.3398999869823456},{"id":"https://openalex.org/C2780227090","wikidata":"https://www.wikidata.org/wiki/Q2636892","display_name":"Alanine scanning","level":5,"score":0.3346000015735626},{"id":"https://openalex.org/C2779756493","wikidata":"https://www.wikidata.org/wiki/Q846227","display_name":"Antiviral drug","level":3,"score":0.3343000113964081},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.33149999380111694},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.3001999855041504},{"id":"https://openalex.org/C2911029443","wikidata":"https://www.wikidata.org/wiki/Q21296145","display_name":"Human proteins","level":3,"score":0.29760000109672546},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.296099990606308},{"id":"https://openalex.org/C139489369","wikidata":"https://www.wikidata.org/wiki/Q770846","display_name":"Structural similarity","level":2,"score":0.28700000047683716},{"id":"https://openalex.org/C12590798","wikidata":"https://www.wikidata.org/wiki/Q3933199","display_name":"Replication (statistics)","level":2,"score":0.27869999408721924},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.2741999924182892},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.273499995470047},{"id":"https://openalex.org/C70153297","wikidata":"https://www.wikidata.org/wiki/Q5591907","display_name":"Gradient boosting","level":3,"score":0.2718000113964081},{"id":"https://openalex.org/C2780806968","wikidata":"https://www.wikidata.org/wiki/Q6045196","display_name":"Interaction model","level":2,"score":0.2671000063419342},{"id":"https://openalex.org/C2994376932","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Amino acid residue","level":4,"score":0.26030001044273376}],"mesh":[{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D004353","descriptor_name":"Drug Evaluation, Preclinical","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004353","descriptor_name":"Drug Evaluation, Preclinical","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018894","descriptor_name":"Reverse Transcriptase Inhibitors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D018894","descriptor_name":"Reverse Transcriptase Inhibitors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D018894","descriptor_name":"Reverse Transcriptase Inhibitors","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D018894","descriptor_name":"Reverse Transcriptase Inhibitors","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D018894","descriptor_name":"Reverse Transcriptase Inhibitors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D018894","descriptor_name":"Reverse Transcriptase Inhibitors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019380","descriptor_name":"Anti-HIV Agents","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D019380","descriptor_name":"Anti-HIV Agents","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D019380","descriptor_name":"Anti-HIV Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D019380","descriptor_name":"Anti-HIV Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D019380","descriptor_name":"Anti-HIV Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019380","descriptor_name":"Anti-HIV Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D054303","descriptor_name":"HIV Reverse Transcriptase","qualifier_ui":"Q000037","qualifier_name":"antagonists & inhibitors","is_major_topic":true},{"descriptor_ui":"D054303","descriptor_name":"HIV Reverse Transcriptase","qualifier_ui":"Q000037","qualifier_name":"antagonists & inhibitors","is_major_topic":true},{"descriptor_ui":"D054303","descriptor_name":"HIV Reverse Transcriptase","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D054303","descriptor_name":"HIV Reverse Transcriptase","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D054303","descriptor_name":"HIV Reverse Transcriptase","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D054303","descriptor_name":"HIV Reverse Transcriptase","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D054303","descriptor_name":"HIV Reverse Transcriptase","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D054303","descriptor_name":"HIV Reverse Transcriptase","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.5c01588","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c01588","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:41085466","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41085466","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G875707226","display_name":null,"funder_award_id":"2025YFC3408400","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G906612804","display_name":null,"funder_award_id":"32370697","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W303483698","https://openalex.org/W1986191025","https://openalex.org/W1988215875","https://openalex.org/W2008954911","https://openalex.org/W2073618053","https://openalex.org/W2086286404","https://openalex.org/W2096864392","https://openalex.org/W2105267696","https://openalex.org/W2112796928","https://openalex.org/W2529433523","https://openalex.org/W2565185351","https://openalex.org/W2717798813","https://openalex.org/W2898110234","https://openalex.org/W2919115771","https://openalex.org/W2970933730","https://openalex.org/W3096561213","https://openalex.org/W3108424837","https://openalex.org/W3125954347","https://openalex.org/W3141600959","https://openalex.org/W3159144392","https://openalex.org/W3167853298","https://openalex.org/W3191439782","https://openalex.org/W3209203994","https://openalex.org/W3216660278","https://openalex.org/W4213345021","https://openalex.org/W4254816979","https://openalex.org/W4283802784","https://openalex.org/W4297914773","https://openalex.org/W4304014553","https://openalex.org/W4385804344","https://openalex.org/W4388636888","https://openalex.org/W4389545596","https://openalex.org/W4393936599","https://openalex.org/W4400654257","https://openalex.org/W4404662629","https://openalex.org/W4407163143"],"related_works":[],"abstract_inverted_index":{"Reverse":[0],"transcriptase":[1],"(RT),":[2],"as":[3,19],"an":[4,42,103],"essential":[5],"key":[6],"enzyme":[7],"in":[8],"the":[9,13,24,30,46,50,59,115,118,123,143,148,153,167,181],"replication":[10],"process":[11],"of":[12,26,33,49,78,97,110,117,125,145,150,183,187],"human":[14],"immunodeficiency":[15],"virus":[16],"(HIV),":[17],"serves":[18],"a":[20,73,158],"crucial":[21],"target":[22],"for":[23,45],"development":[25],"anti-HIV":[27],"drugs.":[28],"Nevertheless,":[29],"frequent":[31],"mutation":[32,80],"RT":[34,61,65,79,100],"leads":[35],"to":[36,132],"drug":[37,51,174],"resistance.":[38],"Therefore,":[39],"there":[40],"is":[41],"urgent":[43],"need":[44],"rapid":[47],"identification":[48],"resistant-susceptible":[52,66],"relationship.":[53],"In":[54],"this":[55],"study,":[56],"we":[57],"developed":[58],"non-nucleoside":[60],"inhibitor":[62],"(NNRTI)":[63],"and":[64,81,99,147,177],"interaction":[67],"prediction":[68],"model":[69,120,169],"(NRIP).":[70],"By":[71],"introducing":[72],"descriptor":[74],"incorporating":[75,135,166],"sequence":[76],"description":[77],"nonuniform":[82],"spatial":[83,136],"shell":[84],"structures":[85],"combined":[86],"with":[87,170],"residue":[88],"properties,":[89],"NRIP":[90,140,168],"was":[91,163],"trained":[92],"based":[93],"on":[94,152],"4324":[95],"pairs":[96],"NNRTIs":[98],"interactions":[101],"through":[102],"extreme":[104],"gradient":[105],"boosting":[106],"(XGBoost)":[107],"classifier.":[108],"Results":[109],"10-fold":[111],"cross-validation":[112],"indicated":[113],"that":[114],"baseline":[116],"sequence-descriptor-based":[119],"could":[121,128,141],"reach":[122],"ROC-AUC":[124,144],"0.886,":[126],"which":[127],"further":[129],"be":[130],"increased":[131],"0.967":[133],"by":[134,165],"descriptors.":[137],"More":[138],"importantly,":[139],"achieve":[142],"0.971":[146],"PR-AUC":[149],"0.974":[151],"independent":[154],"testing":[155],"dataset.":[156],"Finally,":[157],"multistep":[159],"virtual":[160],"screening":[161,184],"pipeline":[162],"constructed":[164],"structure":[171],"similarity":[172],"calculation,":[173],"likeness":[175],"assessment,":[176],"molecular":[178],"docking,":[179],"illustrating":[180],"potential":[182],"bioactive":[185],"compounds":[186,189],"natural":[188],"from":[190],"FOODB.":[191]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-15T00:00:00"}
