{"id":"https://openalex.org/W4414540666","doi":"https://doi.org/10.1021/acs.jcim.5c01489","title":"DeepMaT: Prediction of Target Peptide Classification and Cleavage Site by Combining Mamba2 and Multiple Attention Mechanisms","display_name":"DeepMaT: Prediction of Target Peptide Classification and Cleavage Site by Combining Mamba2 and Multiple Attention Mechanisms","publication_year":2025,"publication_date":"2025-09-26","ids":{"openalex":"https://openalex.org/W4414540666","doi":"https://doi.org/10.1021/acs.jcim.5c01489","pmid":"https://pubmed.ncbi.nlm.nih.gov/41004305"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.5c01489","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c01489","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Qianmao Wen","orcid":null},"institutions":[{"id":"https://openalex.org/I20942203","display_name":"Hainan University","ror":"https://ror.org/03q648j11","country_code":"CN","type":"education","lineage":["https://openalex.org/I20942203"]},{"id":"https://openalex.org/I4390039265","display_name":"PRG S&Tech (South Korea)","ror":"https://ror.org/02sr2ee22","country_code":null,"type":"company","lineage":["https://openalex.org/I4390039265"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qianmao Wen","raw_affiliation_strings":["Hainan University","School of Computer Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hainan University","institution_ids":["https://openalex.org/I20942203"]},{"raw_affiliation_string":"School of Computer Science and Technology","institution_ids":["https://openalex.org/I4390039265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114270411","display_name":"Aoyun Geng","orcid":"https://orcid.org/0009-0004-9716-9415"},"institutions":[{"id":"https://openalex.org/I20942203","display_name":"Hainan University","ror":"https://ror.org/03q648j11","country_code":"CN","type":"education","lineage":["https://openalex.org/I20942203"]},{"id":"https://openalex.org/I4390039265","display_name":"PRG S&Tech (South Korea)","ror":"https://ror.org/02sr2ee22","country_code":null,"type":"company","lineage":["https://openalex.org/I4390039265"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Aoyun Geng","raw_affiliation_strings":["Hainan University","School of Computer Science and Technology","School of Computer Science and Technology, Hainan University, Haikou 570228, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hainan University","institution_ids":["https://openalex.org/I20942203"]},{"raw_affiliation_string":"School of Computer Science and Technology","institution_ids":["https://openalex.org/I4390039265"]},{"raw_affiliation_string":"School of Computer Science and Technology, Hainan University, Haikou 570228, China","institution_ids":["https://openalex.org/I20942203"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066469263","display_name":"Junlin Xu","orcid":"https://orcid.org/0000-0003-1057-1504"},"institutions":[{"id":"https://openalex.org/I4390039265","display_name":"PRG S&Tech (South Korea)","ror":"https://ror.org/02sr2ee22","country_code":null,"type":"company","lineage":["https://openalex.org/I4390039265"]},{"id":"https://openalex.org/I43922553","display_name":"Wuhan University of Science and Technology","ror":"https://ror.org/00e4hrk88","country_code":"CN","type":"education","lineage":["https://openalex.org/I43922553"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junlin Xu","raw_affiliation_strings":["School of Computer Science and Technology","Wuhan University of Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology","institution_ids":["https://openalex.org/I4390039265"]},{"raw_affiliation_string":"Wuhan University of Science and Technology","institution_ids":["https://openalex.org/I43922553"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006543131","display_name":"Yajie Meng","orcid":"https://orcid.org/0000-0002-2384-1158"},"institutions":[{"id":"https://openalex.org/I4210119942","display_name":"Wuhan Textile University","ror":"https://ror.org/02jgsf398","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210119942"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yajie Meng","raw_affiliation_strings":["School of Computer Science and Artificial Intelligence","Wuhan Textile University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Artificial Intelligence","institution_ids":[]},{"raw_affiliation_string":"Wuhan Textile University","institution_ids":["https://openalex.org/I4210119942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033232360","display_name":"Leyi Wei","orcid":"https://orcid.org/0000-0003-1444-190X"},"institutions":[{"id":"https://openalex.org/I4210121405","display_name":"Centre for Artificial Intelligence and Robotics","ror":"https://ror.org/01xnbq218","country_code":"IN","type":"facility","lineage":["https://openalex.org/I1340206300","https://openalex.org/I4210121405","https://openalex.org/I4210150591"]},{"id":"https://openalex.org/I4210164862","display_name":"Artificial Intelligence in Medicine (Canada)","ror":"https://ror.org/05p590m36","country_code":"CA","type":"company","lineage":["https://openalex.org/I4210164862"]},{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["CA","IN","MO"],"is_corresponding":false,"raw_author_name":"Leyi Wei","raw_affiliation_strings":["Centre for Artificial Intelligence Driven Drug Discovery, Faculty of Applied Science","Macao Polytechnic University"],"raw_orcid":"https://orcid.org/0000-0003-1444-190X","affiliations":[{"raw_affiliation_string":"Centre for Artificial Intelligence Driven Drug Discovery, Faculty of Applied Science","institution_ids":["https://openalex.org/I4210121405","https://openalex.org/I4210164862"]},{"raw_affiliation_string":"Macao Polytechnic University","institution_ids":["https://openalex.org/I49835588"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100353028","display_name":"Zilong Zhang","orcid":"https://orcid.org/0000-0002-4934-1258"},"institutions":[{"id":"https://openalex.org/I20942203","display_name":"Hainan University","ror":"https://ror.org/03q648j11","country_code":"CN","type":"education","lineage":["https://openalex.org/I20942203"]},{"id":"https://openalex.org/I4390039265","display_name":"PRG S&Tech (South Korea)","ror":"https://ror.org/02sr2ee22","country_code":null,"type":"company","lineage":["https://openalex.org/I4390039265"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zilong Zhang","raw_affiliation_strings":["Hainan University","School of Computer Science and Technology"],"raw_orcid":"https://orcid.org/0000-0002-4934-1258","affiliations":[{"raw_affiliation_string":"Hainan University","institution_ids":["https://openalex.org/I20942203"]},{"raw_affiliation_string":"School of Computer Science and Technology","institution_ids":["https://openalex.org/I4390039265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017426085","display_name":"Quan Zou","orcid":"https://orcid.org/0000-0001-6406-1142"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Quan Zou","raw_affiliation_strings":["Institute of Fundamental and Frontier Sciences","University of Electronic Science and Technology of China"],"raw_orcid":"https://orcid.org/0000-0001-6406-1142","affiliations":[{"raw_affiliation_string":"Institute of Fundamental and Frontier Sciences","institution_ids":[]},{"raw_affiliation_string":"University of Electronic Science and Technology of China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061028143","display_name":"Feifei Cui","orcid":"https://orcid.org/0000-0001-7055-3813"},"institutions":[{"id":"https://openalex.org/I20942203","display_name":"Hainan University","ror":"https://ror.org/03q648j11","country_code":"CN","type":"education","lineage":["https://openalex.org/I20942203"]},{"id":"https://openalex.org/I4390039265","display_name":"PRG S&Tech (South Korea)","ror":"https://ror.org/02sr2ee22","country_code":null,"type":"company","lineage":["https://openalex.org/I4390039265"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Feifei Cui","raw_affiliation_strings":["Hainan University","School of Computer Science and Technology"],"raw_orcid":"https://orcid.org/0000-0001-7055-3813","affiliations":[{"raw_affiliation_string":"Hainan University","institution_ids":["https://openalex.org/I20942203"]},{"raw_affiliation_string":"School of Computer Science and Technology","institution_ids":["https://openalex.org/I4390039265"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5061028143"],"corresponding_institution_ids":["https://openalex.org/I20942203","https://openalex.org/I4390039265"],"apc_list":null,"apc_paid":null,"fwci":2.1746,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.8820712,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"65","issue":"19","first_page":"10011","last_page":"10024"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cleavage","display_name":"Cleavage (geology)","score":0.8303999900817871},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.43209999799728394},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.365200012922287},{"id":"https://openalex.org/keywords/cleavage-factor","display_name":"Cleavage factor","score":0.32919999957084656},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.31929999589920044},{"id":"https://openalex.org/keywords/end-to-end-principle","display_name":"End-to-end principle","score":0.29010000824928284}],"concepts":[{"id":"https://openalex.org/C175156509","wikidata":"https://www.wikidata.org/wiki/Q1990218","display_name":"Cleavage (geology)","level":3,"score":0.8303999900817871},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6626999974250793},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5011000037193298},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.45969998836517334},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.43209999799728394},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3783000111579895},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.365200012922287},{"id":"https://openalex.org/C133672593","wikidata":"https://www.wikidata.org/wiki/Q5130990","display_name":"Cleavage factor","level":4,"score":0.32919999957084656},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.31929999589920044},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2980000078678131},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2969000041484833},{"id":"https://openalex.org/C74296488","wikidata":"https://www.wikidata.org/wiki/Q2527392","display_name":"End-to-end principle","level":2,"score":0.29010000824928284},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.289900004863739},{"id":"https://openalex.org/C2994376932","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Amino acid residue","level":4,"score":0.2825999855995178},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.2720000147819519},{"id":"https://openalex.org/C67492840","wikidata":"https://www.wikidata.org/wiki/Q22326127","display_name":"Cleavage stimulation factor","level":5,"score":0.26649999618530273},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.2614000141620636},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.25949999690055847},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2563999891281128}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059748","descriptor_name":"Proteolysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059748","descriptor_name":"Proteolysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.5c01489","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c01489","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:41004305","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41004305","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1508426471","display_name":null,"funder_award_id":"0177/2023/RIA3","funder_id":"https://openalex.org/F4320323893","funder_display_name":"Fundo para o Desenvolvimento das Ci\u00eancias e da Tecnologia"},{"id":"https://openalex.org/G771689064","display_name":null,"funder_award_id":"62450002","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7748251527","display_name":null,"funder_award_id":"62450002","funder_id":"https://openalex.org/F4320321540","funder_display_name":"Ministry of Science and Technology of the People's Republic of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321540","display_name":"Ministry of Science and Technology of the People's Republic of China","ror":"https://ror.org/027s68j25"},{"id":"https://openalex.org/F4320323893","display_name":"Fundo para o Desenvolvimento das Ci\u00eancias e da Tecnologia","ror":"https://ror.org/05vna4324"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":52,"referenced_works":["https://openalex.org/W1442124371","https://openalex.org/W1491250132","https://openalex.org/W1521648426","https://openalex.org/W1949937941","https://openalex.org/W1991581560","https://openalex.org/W2020377848","https://openalex.org/W2034545703","https://openalex.org/W2035663056","https://openalex.org/W2036253883","https://openalex.org/W2107432340","https://openalex.org/W2122550753","https://openalex.org/W2129095580","https://openalex.org/W2132083787","https://openalex.org/W2145091739","https://openalex.org/W2149198894","https://openalex.org/W2152458080","https://openalex.org/W2406531951","https://openalex.org/W2612690371","https://openalex.org/W2730472814","https://openalex.org/W2739999456","https://openalex.org/W2776525063","https://openalex.org/W2809247618","https://openalex.org/W2912990441","https://openalex.org/W2936503027","https://openalex.org/W2949779257","https://openalex.org/W2977368063","https://openalex.org/W2995997429","https://openalex.org/W3217155752","https://openalex.org/W4205192056","https://openalex.org/W4206950245","https://openalex.org/W4225264859","https://openalex.org/W4321373691","https://openalex.org/W4327550249","https://openalex.org/W4365516368","https://openalex.org/W4375844546","https://openalex.org/W4379058109","https://openalex.org/W4380488089","https://openalex.org/W4381798611","https://openalex.org/W4382632254","https://openalex.org/W4389685276","https://openalex.org/W4391483046","https://openalex.org/W4396966015","https://openalex.org/W4401142468","https://openalex.org/W4401171136","https://openalex.org/W4403782367","https://openalex.org/W4404229545","https://openalex.org/W4404458588","https://openalex.org/W4407740651","https://openalex.org/W4408973523","https://openalex.org/W4409340338","https://openalex.org/W4411089783","https://openalex.org/W4414163797"],"related_works":[],"abstract_inverted_index":{"Signal":[0],"peptides":[1,4,91,139],"and":[2,30,52,64,92,119],"transit":[3,90],"are":[5],"essential":[6],"for":[7,88,148],"directing":[8],"mature":[9],"proteins":[10],"to":[11],"their":[12,34],"proper":[13],"cellular":[14],"locations,":[15],"particularly":[16],"through":[17],"cleavage":[18,38,80,142],"following":[19],"transport.":[20],"Although":[21],"various":[22],"prediction":[23,136],"tools":[24],"achieve":[25],"strong":[26],"performance":[27],"in":[28,36,79],"identifying":[29],"classifying":[31],"targeting":[32,138],"peptides,":[33],"accuracy":[35,85],"determining":[37],"sites":[39],"remains":[40],"limited.":[41],"We":[42],"introduce":[43],"DeepMaT,":[44],"a":[45,53,145],"deep":[46],"learning":[47],"model":[48,124],"that":[49,73,114],"integrates":[50],"Mamba2":[51,63],"multihead":[54],"self-attention":[55],"mechanism,":[56],"leveraging":[57],"the":[58,65,104,115,128,131],"global":[59],"modeling":[60],"capabilities":[61],"of":[62,68,86,108,117,130,137],"localized":[66],"focus":[67],"self-attention.":[69],"Experimental":[70],"results":[71],"show":[72,113],"DeepMaT":[74,100,152],"significantly":[75],"outperforms":[76],"state-of-the-art":[77],"models":[78],"site":[81],"prediction,":[82],"achieving":[83],"an":[84],"0.867":[87],"thylakoid":[89],"also":[93,134],"performing":[94],"well":[95],"on":[96,156],"other":[97],"peptides.":[98],"Moreover,":[99],"can":[101,122],"accurately":[102],"learn":[103],"amino":[105],"acid":[106],"distribution":[107],"real":[109],"samples.":[110],"Ablation":[111],"experiments":[112],"combination":[116],"Mamba":[118],"attention":[120],"mechanisms":[121],"improve":[123],"efficiency,":[125],"further":[126],"proving":[127],"effectiveness":[129],"combination.":[132],"It":[133],"enables":[135],"with":[140],"unspecified":[141],"sites,":[143],"offering":[144],"valuable":[146],"tool":[147],"protein":[149],"database":[150],"annotation.":[151],"is":[153],"freely":[154],"available":[155],"GitHub":[157],"at":[158],"https://github.com/qianmao2001/DeepMaT.":[159]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":2}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
