{"id":"https://openalex.org/W4411246317","doi":"https://doi.org/10.1021/acs.jcim.5c01164","title":"Noise-Consistent Hypergraph Autoencoder Based on Contrastive Learning for Cancer ceRNA Association Prediction in Complex Biological Regulatory Networks","display_name":"Noise-Consistent Hypergraph Autoencoder Based on Contrastive Learning for Cancer ceRNA Association Prediction in Complex Biological Regulatory Networks","publication_year":2025,"publication_date":"2025-06-12","ids":{"openalex":"https://openalex.org/W4411246317","doi":"https://doi.org/10.1021/acs.jcim.5c01164","pmid":"https://pubmed.ncbi.nlm.nih.gov/40501353"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.5c01164","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c01164","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069085710","display_name":"Xinfei Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]},{"id":"https://openalex.org/I4210136497","display_name":"Jilin Medical University","ror":"https://ror.org/03mzw7781","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210136497"]}],"countries":["CN","IR"],"is_corresponding":false,"raw_author_name":"Xin-Fei Wang","raw_affiliation_strings":["Jilin University","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, College of Computer Science and Technology","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, College of Computer Science and Technology, Jilin University, Changchun 130012, China"],"raw_orcid":"https://orcid.org/0000-0003-0554-2936","affiliations":[{"raw_affiliation_string":"Jilin University","institution_ids":["https://openalex.org/I194450716","https://openalex.org/I4210136497"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, College of Computer Science and Technology","institution_ids":["https://openalex.org/I4210108141"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, College of Computer Science and Technology, Jilin University, Changchun 130012, China","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100727465","display_name":"Lan Huang","orcid":"https://orcid.org/0000-0001-9594-4722"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]},{"id":"https://openalex.org/I4210136497","display_name":"Jilin Medical University","ror":"https://ror.org/03mzw7781","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210136497"]}],"countries":["CN","IR"],"is_corresponding":true,"raw_author_name":"Lan Huang","raw_affiliation_strings":["Jilin University","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, College of Computer Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin University","institution_ids":["https://openalex.org/I194450716","https://openalex.org/I4210136497"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, College of Computer Science and Technology","institution_ids":["https://openalex.org/I4210108141"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100322699","display_name":"Yan Wang","orcid":"https://orcid.org/0000-0002-4751-0708"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]},{"id":"https://openalex.org/I4210136497","display_name":"Jilin Medical University","ror":"https://ror.org/03mzw7781","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210136497"]}],"countries":["CN","IR"],"is_corresponding":true,"raw_author_name":"Yan Wang","raw_affiliation_strings":["Jilin University","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, College of Computer Science and Technology"],"raw_orcid":"https://orcid.org/0000-0002-4751-0708","affiliations":[{"raw_affiliation_string":"Jilin University","institution_ids":["https://openalex.org/I194450716","https://openalex.org/I4210136497"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, College of Computer Science and Technology","institution_ids":["https://openalex.org/I4210108141"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007914848","display_name":"Renchu Guan","orcid":"https://orcid.org/0000-0002-7162-7826"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]},{"id":"https://openalex.org/I4210136497","display_name":"Jilin Medical University","ror":"https://ror.org/03mzw7781","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210136497"]}],"countries":["CN","IR"],"is_corresponding":false,"raw_author_name":"Ren-Chu Guan","raw_affiliation_strings":["Jilin University","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, College of Computer Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin University","institution_ids":["https://openalex.org/I194450716","https://openalex.org/I4210136497"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, College of Computer Science and Technology","institution_ids":["https://openalex.org/I4210108141"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101527932","display_name":"Zhuhong You","orcid":"https://orcid.org/0000-0003-0952-8162"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhu-Hong You","raw_affiliation_strings":["Northwestern Polytechnical University","School of Computer Science"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Northwestern Polytechnical University","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058786170","display_name":"Fengfeng Zhou","orcid":"https://orcid.org/0000-0002-8108-6007"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]},{"id":"https://openalex.org/I4210136497","display_name":"Jilin Medical University","ror":"https://ror.org/03mzw7781","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210136497"]}],"countries":["CN","IR"],"is_corresponding":false,"raw_author_name":"Feng-Feng Zhou","raw_affiliation_strings":["Jilin University","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, College of Computer Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin University","institution_ids":["https://openalex.org/I194450716","https://openalex.org/I4210136497"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, College of Computer Science and Technology","institution_ids":["https://openalex.org/I4210108141"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100379935","display_name":"Yuqing Li","orcid":"https://orcid.org/0000-0002-5110-4323"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Yu-Qing Li","raw_affiliation_strings":["Faculty of Arts and Science","University of Toronto"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Arts and Science","institution_ids":[]},{"raw_affiliation_string":"University of Toronto","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100675786","display_name":"Ziqi Zhao","orcid":"https://orcid.org/0009-0003-6776-3029"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]},{"id":"https://openalex.org/I4210136497","display_name":"Jilin Medical University","ror":"https://ror.org/03mzw7781","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210136497"]}],"countries":["CN","IR"],"is_corresponding":false,"raw_author_name":"Zi-Qi Zhao","raw_affiliation_strings":["Jilin University","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, College of Computer Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin University","institution_ids":["https://openalex.org/I194450716","https://openalex.org/I4210136497"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, College of Computer Science and Technology","institution_ids":["https://openalex.org/I4210108141"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100322699","https://openalex.org/A5100727465"],"corresponding_institution_ids":["https://openalex.org/I194450716","https://openalex.org/I4210108141","https://openalex.org/I4210136497"],"apc_list":null,"apc_paid":null,"fwci":2.3556,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.89160176,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"65","issue":"12","first_page":"6417","last_page":"6430"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/autoencoder","display_name":"Autoencoder","score":0.6343055367469788},{"id":"https://openalex.org/keywords/hypergraph","display_name":"Hypergraph","score":0.6293724775314331},{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.5888648629188538},{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.5323721766471863},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47646236419677734},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.475935697555542},{"id":"https://openalex.org/keywords/competing-endogenous-rna","display_name":"Competing endogenous RNA","score":0.41839170455932617},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41704609990119934},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3970266580581665},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.34278595447540283},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3231218457221985},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30546683073043823},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.2839488983154297},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.21996194124221802},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.18084734678268433},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16628387570381165},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14883211255073547},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.08665776252746582},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.07503360509872437}],"concepts":[{"id":"https://openalex.org/C101738243","wikidata":"https://www.wikidata.org/wiki/Q786435","display_name":"Autoencoder","level":3,"score":0.6343055367469788},{"id":"https://openalex.org/C2781221856","wikidata":"https://www.wikidata.org/wiki/Q840247","display_name":"Hypergraph","level":2,"score":0.6293724775314331},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.5888648629188538},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.5323721766471863},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47646236419677734},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.475935697555542},{"id":"https://openalex.org/C60365752","wikidata":"https://www.wikidata.org/wiki/Q5156306","display_name":"Competing endogenous RNA","level":5,"score":0.41839170455932617},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41704609990119934},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3970266580581665},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.34278595447540283},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3231218457221985},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30546683073043823},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.2839488983154297},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.21996194124221802},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.18084734678268433},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16628387570381165},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14883211255073547},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.08665776252746582},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.07503360509872437},{"id":"https://openalex.org/C62203573","wikidata":"https://www.wikidata.org/wiki/Q15087973","display_name":"Long non-coding RNA","level":4,"score":0.0},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000095482","descriptor_name":"RNA, Competitive Endogenous","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095482","descriptor_name":"RNA, Competitive Endogenous","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095482","descriptor_name":"RNA, Competitive Endogenous","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098446","descriptor_name":"Autoencoder","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098446","descriptor_name":"Autoencoder","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098446","descriptor_name":"Autoencoder","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.5c01164","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c01164","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:40501353","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40501353","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2241915452","display_name":"\u878d\u5408\u591a\u7ec4\u5b66\u6570\u636e\u7684\u80f0\u817a\u764c\u4f53\u6db2\u6807\u5fd7\u7269\u7cbe\u51c6\u6316\u6398\u4e0e\u673a\u7406\u7814\u7a76","funder_award_id":"62072212","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3001460117","display_name":null,"funder_award_id":"20230201065GX","funder_id":"https://openalex.org/F4320335953","funder_display_name":"Jilin Scientific and Technological Development Program"},{"id":"https://openalex.org/G3380686447","display_name":null,"funder_award_id":"20240101364JC","funder_id":"https://openalex.org/F4320335953","funder_display_name":"Jilin Scientific and Technological Development Program"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322300","display_name":"Jilin University","ror":"https://ror.org/00js3aw79"},{"id":"https://openalex.org/F4320335953","display_name":"Jilin Scientific and Technological Development Program","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":51,"referenced_works":["https://openalex.org/W2046387002","https://openalex.org/W2158485828","https://openalex.org/W2162674813","https://openalex.org/W2335029242","https://openalex.org/W2764294957","https://openalex.org/W2892880750","https://openalex.org/W3011122062","https://openalex.org/W3045143113","https://openalex.org/W3080566854","https://openalex.org/W3098523662","https://openalex.org/W3108155943","https://openalex.org/W3155496675","https://openalex.org/W3187966659","https://openalex.org/W3200356212","https://openalex.org/W4200043367","https://openalex.org/W4200043717","https://openalex.org/W4210548518","https://openalex.org/W4282926996","https://openalex.org/W4291825018","https://openalex.org/W4294167348","https://openalex.org/W4294376371","https://openalex.org/W4295241431","https://openalex.org/W4297183296","https://openalex.org/W4361017398","https://openalex.org/W4380742233","https://openalex.org/W4385288794","https://openalex.org/W4385564848","https://openalex.org/W4385767936","https://openalex.org/W4387516871","https://openalex.org/W4392903220","https://openalex.org/W4393158757","https://openalex.org/W4395030761","https://openalex.org/W4396835384","https://openalex.org/W4400768551","https://openalex.org/W4401093660","https://openalex.org/W4401485218","https://openalex.org/W4402253613","https://openalex.org/W4403809881","https://openalex.org/W4403889214","https://openalex.org/W4404219622","https://openalex.org/W4404260628","https://openalex.org/W4405474866","https://openalex.org/W4406234938","https://openalex.org/W4406632986","https://openalex.org/W4407319120","https://openalex.org/W4409364135","https://openalex.org/W4409364207","https://openalex.org/W4409474031","https://openalex.org/W4409665707","https://openalex.org/W4409783356","https://openalex.org/W4409947437"],"related_works":["https://openalex.org/W2927233132","https://openalex.org/W1998618295","https://openalex.org/W3013693939","https://openalex.org/W2586183753","https://openalex.org/W3134273865","https://openalex.org/W3135639358","https://openalex.org/W4376608589","https://openalex.org/W2566616303","https://openalex.org/W2159052453","https://openalex.org/W2805285958"],"abstract_inverted_index":{"Competitive":[0],"endogenous":[1],"RNA":[2],"(ceRNA)":[3],"regulatory":[4,89],"networks":[5,90],"(CENA)":[6],"have":[7],"advanced":[8],"our":[9],"understanding":[10],"of":[11,96,121,145],"noncoding":[12],"RNAs'":[13],"roles":[14],"in":[15,41,62,87,185,201],"complex":[16],"diseases,":[17],"providing":[18,205],"a":[19,71,102,136,206],"theoretical":[20],"basis":[21],"for":[22,209],"disease":[23],"mechanisms.":[24],"Existing":[25],"ceRNA-disease":[26],"association":[27],"prediction":[28,95],"methods":[29],"are":[30],"limited":[31],"by":[32,131],"traditional":[33],"graph":[34],"structures'":[35],"inability":[36],"to":[37,53,116,126,148],"model":[38],"long-range":[39],"dependencies":[40],"biological":[42],"networks.":[43],"While":[44],"hypergraph":[45,122,160],"models":[46],"partially":[47],"address":[48,66],"this,":[49],"they":[50],"often":[51],"fail":[52],"effectively":[54],"handle":[55],"graph-level":[56,108],"and":[57,91,109,155,162,191],"node-level":[58,110],"noise,":[59],"hindering":[60],"improvements":[61],"predictive":[63,192],"performance.":[64],"To":[65],"these":[67],"challenges,":[68],"we":[69],"propose":[70],"Noise-Consistent":[72],"hypeRgraph":[73],"AutoEncoder":[74],"framework":[75],"with":[76,112,159],"denoising":[77],"strategies,":[78],"termed":[79],"NCRAE,":[80],"aimed":[81],"at":[82],"achieving":[83],"robust":[84],"node":[85,169],"embeddings":[86],"ceRNA":[88,98,175],"enabling":[92],"the":[93,119,143,151],"precise":[94],"cancer-related":[97,174],"biomarkers.":[99],"NCRAE":[100,134,166,180],"employs":[101],"multiview":[103],"contrastive":[104,132],"learning":[105],"strategy,":[106],"integrating":[107],"corruption":[111],"clean":[113],"feature":[114,123],"references":[115],"significantly":[117],"enhance":[118],"robustness":[120,190],"learning.":[124,171],"Furthermore,":[125],"mitigate":[127],"potential":[128],"biases":[129],"introduced":[130],"learning,":[133],"incorporates":[135],"noise":[137,153],"consistency":[138],"loss":[139],"constraint,":[140],"dynamically":[141],"adjusting":[142],"weights":[144],"each":[146],"component":[147],"further":[149,196],"optimize":[150],"model's":[152],"resistance":[154],"generalization":[156],"ability.":[157],"Combined":[158],"convolution":[161],"Fourier":[163],"KAN":[164],"techniques,":[165],"achieves":[167],"effective":[168],"embedding":[170],"Experiments":[172],"on":[173],"data":[176],"sets":[177],"show":[178],"that":[179],"outperforms":[181],"existing":[182],"methods,":[183],"especially":[184],"noisy":[186],"conditions,":[187],"demonstrating":[188],"its":[189,198],"capability.":[193],"Case":[194],"studies":[195],"illustrate":[197],"practical":[199],"value":[200],"cancer":[202,210],"biomarker":[203,211],"prediction,":[204],"powerful":[207],"tool":[208],"discovery.":[212]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
