{"id":"https://openalex.org/W4412489532","doi":"https://doi.org/10.1021/acs.jcim.5c00990","title":"Exploring the Intrinsic Structural Plasticity and Conformational Dynamics of Human Beta Coronavirus Spike Glycoproteins","display_name":"Exploring the Intrinsic Structural Plasticity and Conformational Dynamics of Human Beta Coronavirus Spike Glycoproteins","publication_year":2025,"publication_date":"2025-07-17","ids":{"openalex":"https://openalex.org/W4412489532","doi":"https://doi.org/10.1021/acs.jcim.5c00990","pmid":"https://pubmed.ncbi.nlm.nih.gov/40673918"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.5c00990","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c00990","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1021/acs.jcim.5c00990","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087116263","display_name":"Yago Ferreira e Silva","orcid":null},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Yago Ferreira e Silva","raw_affiliation_strings":["Programa de Computa\u00e7\u00e3o Cient\u00edfica, Vice-Presid\u00eancia de Educa\u00e7\u00e3o, Informa\u00e7\u00e3o e Comunica\u00e7\u00e3o, Funda\u00e7\u00e3o Oswaldo Cruz, Av. Brasil 4365, Resid\u00eancia Oficial, Manguinhos, 21040-900 Rio de Janeiro, Brazil","Programa de P\u00f3s-gradua\u00e7\u00e3o em Biologia Computacional e Sistemas, Instituto Oswaldo Cruz, Funda\u00e7\u00e3o Oswaldo Cruz, Av. Brasil 4365, Manguinhos, 21040-900 Rio de Janeiro, Brazil"],"raw_orcid":"https://orcid.org/0009-0005-2781-1203","affiliations":[{"raw_affiliation_string":"Programa de Computa\u00e7\u00e3o Cient\u00edfica, Vice-Presid\u00eancia de Educa\u00e7\u00e3o, Informa\u00e7\u00e3o e Comunica\u00e7\u00e3o, Funda\u00e7\u00e3o Oswaldo Cruz, Av. Brasil 4365, Resid\u00eancia Oficial, Manguinhos, 21040-900 Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I52325"]},{"raw_affiliation_string":"Programa de P\u00f3s-gradua\u00e7\u00e3o em Biologia Computacional e Sistemas, Instituto Oswaldo Cruz, Funda\u00e7\u00e3o Oswaldo Cruz, Av. Brasil 4365, Manguinhos, 21040-900 Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I52325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031589752","display_name":"Harold Hilarion Fokoue","orcid":"https://orcid.org/0000-0001-7823-127X"},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Harold Hilarion Fokoue","raw_affiliation_strings":["Programa de Computa\u00e7\u00e3o Cient\u00edfica, Vice-Presid\u00eancia de Educa\u00e7\u00e3o, Informa\u00e7\u00e3o e Comunica\u00e7\u00e3o, Funda\u00e7\u00e3o Oswaldo Cruz, Av. Brasil 4365, Resid\u00eancia Oficial, Manguinhos, 21040-900 Rio de Janeiro, Brazil"],"raw_orcid":"https://orcid.org/0000-0001-7823-127X","affiliations":[{"raw_affiliation_string":"Programa de Computa\u00e7\u00e3o Cient\u00edfica, Vice-Presid\u00eancia de Educa\u00e7\u00e3o, Informa\u00e7\u00e3o e Comunica\u00e7\u00e3o, Funda\u00e7\u00e3o Oswaldo Cruz, Av. Brasil 4365, Resid\u00eancia Oficial, Manguinhos, 21040-900 Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I52325"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087424501","display_name":"Paulo Ricardo Batista","orcid":"https://orcid.org/0000-0002-3399-174X"},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Paulo Ricardo Batista","raw_affiliation_strings":["Programa de Computa\u00e7\u00e3o Cient\u00edfica, Vice-Presid\u00eancia de Educa\u00e7\u00e3o, Informa\u00e7\u00e3o e Comunica\u00e7\u00e3o, Funda\u00e7\u00e3o Oswaldo Cruz, Av. Brasil 4365, Resid\u00eancia Oficial, Manguinhos, 21040-900 Rio de Janeiro, Brazil","Programa de P\u00f3s-gradua\u00e7\u00e3o em Biologia Computacional e Sistemas, Instituto Oswaldo Cruz, Funda\u00e7\u00e3o Oswaldo Cruz, Av. Brasil 4365, Manguinhos, 21040-900 Rio de Janeiro, Brazil"],"raw_orcid":"https://orcid.org/0000-0002-3399-174X","affiliations":[{"raw_affiliation_string":"Programa de Computa\u00e7\u00e3o Cient\u00edfica, Vice-Presid\u00eancia de Educa\u00e7\u00e3o, Informa\u00e7\u00e3o e Comunica\u00e7\u00e3o, Funda\u00e7\u00e3o Oswaldo Cruz, Av. Brasil 4365, Resid\u00eancia Oficial, Manguinhos, 21040-900 Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I52325"]},{"raw_affiliation_string":"Programa de P\u00f3s-gradua\u00e7\u00e3o em Biologia Computacional e Sistemas, Instituto Oswaldo Cruz, Funda\u00e7\u00e3o Oswaldo Cruz, Av. Brasil 4365, Manguinhos, 21040-900 Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I52325"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5087424501"],"corresponding_institution_ids":["https://openalex.org/I52325"],"apc_list":null,"apc_paid":null,"fwci":2.3511,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.88420536,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"65","issue":"14","first_page":"7712","last_page":"7733"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.5952533483505249},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.5192065834999084},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.5001146793365479},{"id":"https://openalex.org/keywords/immune-escape","display_name":"Immune escape","score":0.49054235219955444},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.46800246834754944},{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.44066670536994934},{"id":"https://openalex.org/keywords/ligand","display_name":"Ligand (biochemistry)","score":0.42587149143218994},{"id":"https://openalex.org/keywords/spike","display_name":"Spike (software development)","score":0.4119469225406647},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3465918302536011},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.34313082695007324},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28069302439689636},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.276228129863739},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.24489787220954895},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.14822492003440857},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12432673573493958},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.10207176208496094},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.09559941291809082}],"concepts":[{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.5952533483505249},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.5192065834999084},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.5001146793365479},{"id":"https://openalex.org/C3018558359","wikidata":"https://www.wikidata.org/wiki/Q1660157","display_name":"Immune escape","level":3,"score":0.49054235219955444},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.46800246834754944},{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.44066670536994934},{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.42587149143218994},{"id":"https://openalex.org/C2781390188","wikidata":"https://www.wikidata.org/wiki/Q25203449","display_name":"Spike (software development)","level":2,"score":0.4119469225406647},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3465918302536011},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.34313082695007324},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28069302439689636},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.276228129863739},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.24489787220954895},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.14822492003440857},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12432673573493958},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.10207176208496094},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.09559941291809082},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.0},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.0},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020285","descriptor_name":"Cryoelectron Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020285","descriptor_name":"Cryoelectron Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020285","descriptor_name":"Cryoelectron Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1021/acs.jcim.5c00990","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c00990","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:40673918","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40673918","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:arca.fiocruz.br:icict/74022","is_oa":true,"landing_page_url":"https://arca.fiocruz.br/handle/icict/74022","pdf_url":null,"source":{"id":"https://openalex.org/S7407055450","display_name":"Arca - Reposit\u00f3rio Institucional da Fiocruz","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12308813","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12308813","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Chem Inf Model","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1021/acs.jcim.5c00990","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c00990","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.6100000143051147}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320322749","display_name":"Funda\u00e7\u00e3o Carlos Chagas Filho de Amparo \u00e0 Pesquisa do Estado do Rio de Janeiro","ror":"https://ror.org/03kk0s825"},{"id":"https://openalex.org/F4320323917","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08"},{"id":"https://openalex.org/F8118325985","display_name":"Instituto Oswaldo Cruz","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":96,"referenced_works":["https://openalex.org/W2011301426","https://openalex.org/W2015110061","https://openalex.org/W2018748094","https://openalex.org/W2029667189","https://openalex.org/W2103325328","https://openalex.org/W2107120531","https://openalex.org/W2113149246","https://openalex.org/W2114850508","https://openalex.org/W2130479394","https://openalex.org/W2132926880","https://openalex.org/W2141205833","https://openalex.org/W2161870238","https://openalex.org/W2181616869","https://openalex.org/W2322463084","https://openalex.org/W2329495415","https://openalex.org/W2941744120","https://openalex.org/W3003257820","https://openalex.org/W3006645647","https://openalex.org/W3007643904","https://openalex.org/W3009335299","https://openalex.org/W3014067025","https://openalex.org/W3035265089","https://openalex.org/W3039124487","https://openalex.org/W3039901154","https://openalex.org/W3045149055","https://openalex.org/W3046468150","https://openalex.org/W3046558543","https://openalex.org/W3046751266","https://openalex.org/W3048714202","https://openalex.org/W3058836816","https://openalex.org/W3082869193","https://openalex.org/W3084653951","https://openalex.org/W3089547880","https://openalex.org/W3092403777","https://openalex.org/W3093256686","https://openalex.org/W3101256734","https://openalex.org/W3103145119","https://openalex.org/W3104727101","https://openalex.org/W3109311619","https://openalex.org/W3114507428","https://openalex.org/W3119386323","https://openalex.org/W3124004301","https://openalex.org/W3127683214","https://openalex.org/W3128276018","https://openalex.org/W3129655360","https://openalex.org/W3131760520","https://openalex.org/W3134208712","https://openalex.org/W3135383916","https://openalex.org/W3137163680","https://openalex.org/W3140562424","https://openalex.org/W3150635270","https://openalex.org/W3153528761","https://openalex.org/W3156343712","https://openalex.org/W3159935191","https://openalex.org/W3165506164","https://openalex.org/W3180160398","https://openalex.org/W3190423635","https://openalex.org/W3198233589","https://openalex.org/W3201270194","https://openalex.org/W3216605334","https://openalex.org/W4205170082","https://openalex.org/W4206178168","https://openalex.org/W4210793004","https://openalex.org/W4220807057","https://openalex.org/W4225691034","https://openalex.org/W4246271978","https://openalex.org/W4281486483","https://openalex.org/W4281939105","https://openalex.org/W4285728353","https://openalex.org/W4285732032","https://openalex.org/W4286816991","https://openalex.org/W4292883071","https://openalex.org/W4293253859","https://openalex.org/W4297172779","https://openalex.org/W4304775796","https://openalex.org/W4308965330","https://openalex.org/W4309264215","https://openalex.org/W4311023694","https://openalex.org/W4313315566","https://openalex.org/W4313887203","https://openalex.org/W4320731274","https://openalex.org/W4324138357","https://openalex.org/W4360853931","https://openalex.org/W4366084323","https://openalex.org/W4376126459","https://openalex.org/W4379012421","https://openalex.org/W4379768261","https://openalex.org/W4381251494","https://openalex.org/W4387332426","https://openalex.org/W4391352365","https://openalex.org/W4395038155","https://openalex.org/W4402630746","https://openalex.org/W4402913755","https://openalex.org/W4404458588","https://openalex.org/W4408414812","https://openalex.org/W4409679593"],"related_works":["https://openalex.org/W2174331923","https://openalex.org/W2050175337","https://openalex.org/W4408447381","https://openalex.org/W2329992713","https://openalex.org/W3050304047","https://openalex.org/W2317338006","https://openalex.org/W2385487847","https://openalex.org/W2062974934","https://openalex.org/W2385476654","https://openalex.org/W4391180290"],"abstract_inverted_index":{"form":[0],"but":[1],"remained":[2],"capable":[3],"of":[4,14,28,73],"ligand-induced":[5],"opening.":[6],"Dynamical":[7],"network":[8],"analysis":[9],"identified":[10],"an":[11],"Omicron-specific":[12],"remodeling":[13],"interdomain":[15],"communication,":[16],"altering":[17],"the":[18,34,51,71],"mechanical":[19],"connectivity":[20],"between":[21],"RBD,":[22],"NTD,":[23],"and":[24,76],"S2":[25],"subunits.":[26],"Analysis":[27],"single-experiment":[29],"multimodel":[30],"cryo-EM":[31],"data":[32],"from":[33],"Beta":[35],"variant":[36],"captured":[37],"temperature-dependent":[38],"metastable":[39],"states,":[40],"validating":[41],"ensemble-based":[42],"modeling.":[43],"Finally,":[44],"hybrid":[45],"molecular":[46],"dynamics":[47],"simulations":[48],"successfully":[49],"reproduced":[50],"spike":[52,67],"experimentally":[53],"observed":[54],"in":[55],"conformational":[56,68],"space,":[57],"unlike":[58],"standard":[59],"MD.":[60],"These":[61],"findings":[62],"offer":[63],"mechanistic":[64],"insight":[65],"into":[66],"dynamics,":[69],"supporting":[70],"design":[72],"variant-adapted":[74],"therapeutics":[75],"vaccines.":[77]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-05-08T15:41:06.802602","created_date":"2025-07-18T00:00:00"}
