{"id":"https://openalex.org/W4410784464","doi":"https://doi.org/10.1021/acs.jcim.5c00871","title":"Moltiverse: Molecular Conformer Generation Using Enhanced Sampling Methods","display_name":"Moltiverse: Molecular Conformer Generation Using Enhanced Sampling Methods","publication_year":2025,"publication_date":"2025-05-27","ids":{"openalex":"https://openalex.org/W4410784464","doi":"https://doi.org/10.1021/acs.jcim.5c00871","pmid":"https://pubmed.ncbi.nlm.nih.gov/40421608"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.5c00871","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c00871","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090322599","display_name":"Mauricio Bedoya","orcid":"https://orcid.org/0000-0002-3542-7528"},"institutions":[{"id":"https://openalex.org/I2799535320","display_name":"Catholic University of the Maule","ror":"https://ror.org/04vdpck27","country_code":"CL","type":"education","lineage":["https://openalex.org/I2799535320"]}],"countries":["CL"],"is_corresponding":true,"raw_author_name":"Mauricio Bedoya","raw_affiliation_strings":["Centro de Investigaci\u00f3n de Estudios Avanzados del Maule (CIEAM), Vicerrector\u00eda de Investigaci\u00f3n y Postgrado","Laboratorio de Bioinform\u00e1tica y Qu\u00edmica Computacional (LBQC), Departamento de Medicina Traslacional, Facultad de Medicina","Universidad Cat\u00f3lica del Maule"],"affiliations":[{"raw_affiliation_string":"Centro de Investigaci\u00f3n de Estudios Avanzados del Maule (CIEAM), Vicerrector\u00eda de Investigaci\u00f3n y Postgrado","institution_ids":[]},{"raw_affiliation_string":"Laboratorio de Bioinform\u00e1tica y Qu\u00edmica Computacional (LBQC), Departamento de Medicina Traslacional, Facultad de Medicina","institution_ids":[]},{"raw_affiliation_string":"Universidad Cat\u00f3lica del Maule","institution_ids":["https://openalex.org/I2799535320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024124508","display_name":"Francisco Adasme\u2010Carre\u00f1o","orcid":"https://orcid.org/0000-0003-0971-9081"},"institutions":[{"id":"https://openalex.org/I2799535320","display_name":"Catholic University of the Maule","ror":"https://ror.org/04vdpck27","country_code":"CL","type":"education","lineage":["https://openalex.org/I2799535320"]}],"countries":["CL"],"is_corresponding":true,"raw_author_name":"Francisco Adasme-Carre\u00f1o","raw_affiliation_strings":["Centro de Investigaci\u00f3n de Estudios Avanzados del Maule (CIEAM), Vicerrector\u00eda de Investigaci\u00f3n y Postgrado","Laboratorio de Bioinform\u00e1tica y Qu\u00edmica Computacional (LBQC), Departamento de Medicina Traslacional, Facultad de Medicina","Universidad Cat\u00f3lica del Maule"],"affiliations":[{"raw_affiliation_string":"Centro de Investigaci\u00f3n de Estudios Avanzados del Maule (CIEAM), Vicerrector\u00eda de Investigaci\u00f3n y Postgrado","institution_ids":[]},{"raw_affiliation_string":"Laboratorio de Bioinform\u00e1tica y Qu\u00edmica Computacional (LBQC), Departamento de Medicina Traslacional, Facultad de Medicina","institution_ids":[]},{"raw_affiliation_string":"Universidad Cat\u00f3lica del Maule","institution_ids":["https://openalex.org/I2799535320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044621150","display_name":"Paula Andrea Pe\u00f1a-Mart\u00ednez","orcid":"https://orcid.org/0000-0002-6609-2572"},"institutions":[{"id":"https://openalex.org/I134695357","display_name":"University of Talca","ror":"https://ror.org/01s4gpq44","country_code":"CL","type":"education","lineage":["https://openalex.org/I134695357"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Paula Andrea Pe\u00f1a-Mart\u00ednez","raw_affiliation_strings":["Doctorado en Ciencias Agrarias, Facultad de Ciencias Agrarias","Universidad de Talca"],"affiliations":[{"raw_affiliation_string":"Doctorado en Ciencias Agrarias, Facultad de Ciencias Agrarias","institution_ids":[]},{"raw_affiliation_string":"Universidad de Talca","institution_ids":["https://openalex.org/I134695357"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103249638","display_name":"Camila Mu\u00f1oz\u2010Gutierrez","orcid":"https://orcid.org/0000-0003-0919-6903"},"institutions":[{"id":"https://openalex.org/I2799535320","display_name":"Catholic University of the Maule","ror":"https://ror.org/04vdpck27","country_code":"CL","type":"education","lineage":["https://openalex.org/I2799535320"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Camila Mu\u00f1oz-Guti\u00e9rrez","raw_affiliation_strings":["Centro de Investigaci\u00f3n de Estudios Avanzados del Maule (CIEAM), Vicerrector\u00eda de Investigaci\u00f3n y Postgrado","Laboratorio de Bioinform\u00e1tica y Qu\u00edmica Computacional (LBQC), Departamento de Medicina Traslacional, Facultad de Medicina","Universidad Cat\u00f3lica del Maule"],"affiliations":[{"raw_affiliation_string":"Centro de Investigaci\u00f3n de Estudios Avanzados del Maule (CIEAM), Vicerrector\u00eda de Investigaci\u00f3n y Postgrado","institution_ids":[]},{"raw_affiliation_string":"Laboratorio de Bioinform\u00e1tica y Qu\u00edmica Computacional (LBQC), Departamento de Medicina Traslacional, Facultad de Medicina","institution_ids":[]},{"raw_affiliation_string":"Universidad Cat\u00f3lica del Maule","institution_ids":["https://openalex.org/I2799535320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114527863","display_name":"Luciano Pe\u00f1a-Tejo","orcid":"https://orcid.org/0009-0002-2604-7694"},"institutions":[{"id":"https://openalex.org/I134695357","display_name":"University of Talca","ror":"https://ror.org/01s4gpq44","country_code":"CL","type":"education","lineage":["https://openalex.org/I134695357"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Luciano Pe\u00f1a-Tejo","raw_affiliation_strings":["Center for Bioinformatics, Simulation and Modeling (CBSM), and Department of Bioinformatics, Faculty of Engineering","Universidad de Talca"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, Simulation and Modeling (CBSM), and Department of Bioinformatics, Faculty of Engineering","institution_ids":[]},{"raw_affiliation_string":"Universidad de Talca","institution_ids":["https://openalex.org/I134695357"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021211877","display_name":"Jos\u00e9 Carlos Estanislao M\u00e1rquez Montesinos","orcid":"https://orcid.org/0000-0002-4682-1969"},"institutions":[{"id":"https://openalex.org/I134695357","display_name":"University of Talca","ror":"https://ror.org/01s4gpq44","country_code":"CL","type":"education","lineage":["https://openalex.org/I134695357"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 C. E. M\u00e1rquez Montesinos","raw_affiliation_strings":["Center for Bioinformatics, Simulation and Modeling (CBSM), and Department of Bioinformatics, Faculty of Engineering","Universidad de Talca"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, Simulation and Modeling (CBSM), and Department of Bioinformatics, Faculty of Engineering","institution_ids":[]},{"raw_affiliation_string":"Universidad de Talca","institution_ids":["https://openalex.org/I134695357"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047783241","display_name":"Erix W. Hern\u00e1ndez\u2010Rodr\u00edguez","orcid":"https://orcid.org/0000-0002-9231-7552"},"institutions":[{"id":"https://openalex.org/I2799535320","display_name":"Catholic University of the Maule","ror":"https://ror.org/04vdpck27","country_code":"CL","type":"education","lineage":["https://openalex.org/I2799535320"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Erix W. Hern\u00e1ndez-Rodr\u00edguez","raw_affiliation_strings":["Laboratorio de Bioinform\u00e1tica y Qu\u00edmica Computacional (LBQC), Departamento de Medicina Traslacional, Facultad de Medicina","Unidad de Bioinform\u00e1tica Cl\u00ednica, Centro Oncol\u00f3gico, Facultad de Medicina","Universidad Cat\u00f3lica del Maule"],"affiliations":[{"raw_affiliation_string":"Laboratorio de Bioinform\u00e1tica y Qu\u00edmica Computacional (LBQC), Departamento de Medicina Traslacional, Facultad de Medicina","institution_ids":[]},{"raw_affiliation_string":"Unidad de Bioinform\u00e1tica Cl\u00ednica, Centro Oncol\u00f3gico, Facultad de Medicina","institution_ids":[]},{"raw_affiliation_string":"Universidad Cat\u00f3lica del Maule","institution_ids":["https://openalex.org/I2799535320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018304322","display_name":"Wendy Gonz\u00e1lez","orcid":"https://orcid.org/0000-0002-7535-6883"},"institutions":[{"id":"https://openalex.org/I134695357","display_name":"University of Talca","ror":"https://ror.org/01s4gpq44","country_code":"CL","type":"education","lineage":["https://openalex.org/I134695357"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Wendy Gonz\u00e1lez","raw_affiliation_strings":["Center for Bioinformatics, Simulation and Modeling (CBSM), and Department of Bioinformatics, Faculty of Engineering","Universidad de Talca"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, Simulation and Modeling (CBSM), and Department of Bioinformatics, Faculty of Engineering","institution_ids":[]},{"raw_affiliation_string":"Universidad de Talca","institution_ids":["https://openalex.org/I134695357"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019517261","display_name":"Leandro Mart\u0131\u0301nez","orcid":"https://orcid.org/0000-0002-6857-1884"},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Leandro Mart\u00ednez","raw_affiliation_strings":["Institute of Chemistry and Center for Computing in Engineering & Science","University of Campinas"],"affiliations":[{"raw_affiliation_string":"Institute of Chemistry and Center for Computing in Engineering & Science","institution_ids":[]},{"raw_affiliation_string":"University of Campinas","institution_ids":["https://openalex.org/I181391015"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047437118","display_name":"Jans Alzate\u2010Morales","orcid":"https://orcid.org/0000-0001-9624-7849"},"institutions":[{"id":"https://openalex.org/I134695357","display_name":"University of Talca","ror":"https://ror.org/01s4gpq44","country_code":"CL","type":"education","lineage":["https://openalex.org/I134695357"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Jans Alzate-Morales","raw_affiliation_strings":["Center for Bioinformatics, Simulation and Modeling (CBSM), and Department of Bioinformatics, Faculty of Engineering","Universidad de Talca"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, Simulation and Modeling (CBSM), and Department of Bioinformatics, Faculty of Engineering","institution_ids":[]},{"raw_affiliation_string":"Universidad de Talca","institution_ids":["https://openalex.org/I134695357"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5024124508","https://openalex.org/A5090322599"],"corresponding_institution_ids":["https://openalex.org/I2799535320"],"apc_list":null,"apc_paid":null,"fwci":3.3032,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.92248395,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":"65","issue":"12","first_page":"5998","last_page":"6013"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9871000051498413,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9804999828338623,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/conformational-isomerism","display_name":"Conformational isomerism","score":0.749424934387207},{"id":"https://openalex.org/keywords/sampling","display_name":"Sampling (signal processing)","score":0.523465096950531},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.35613059997558594},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2652175724506378},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.1573377549648285},{"id":"https://openalex.org/keywords/organic-chemistry","display_name":"Organic chemistry","score":0.08199048042297363},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.055820316076278687}],"concepts":[{"id":"https://openalex.org/C18705241","wikidata":"https://www.wikidata.org/wiki/Q1128023","display_name":"Conformational isomerism","level":3,"score":0.749424934387207},{"id":"https://openalex.org/C140779682","wikidata":"https://www.wikidata.org/wiki/Q210868","display_name":"Sampling (signal processing)","level":3,"score":0.523465096950531},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.35613059997558594},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2652175724506378},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.1573377549648285},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.08199048042297363},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.055820316076278687},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.5c00871","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c00871","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:40421608","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40421608","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1547240181","display_name":null,"funder_award_id":"3210774","funder_id":"https://openalex.org/F4320338073","funder_display_name":"Fondo Nacional de Desarrollo Cient\u00edfico y Tecnol\u00f3gico"},{"id":"https://openalex.org/G1685967778","display_name":null,"funder_award_id":"11230033","funder_id":"https://openalex.org/F4320338073","funder_display_name":"Fondo Nacional de Desarrollo Cient\u00edfico y Tecnol\u00f3gico"},{"id":"https://openalex.org/G4290465780","display_name":null,"funder_award_id":"21190245","funder_id":"https://openalex.org/F4320331146","funder_display_name":"Agencia Nacional de Investigaci\u00f3n y Desarrollo"},{"id":"https://openalex.org/G4637741804","display_name":null,"funder_award_id":"302332/2016-2","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G4821851453","display_name":null,"funder_award_id":"1230999","funder_id":"https://openalex.org/F4320338073","funder_display_name":"Fondo Nacional de Desarrollo Cient\u00edfico y Tecnol\u00f3gico"},{"id":"https://openalex.org/G5288086616","display_name":null,"funder_award_id":"1230446","funder_id":"https://openalex.org/F4320331146","funder_display_name":"Agencia Nacional de Investigaci\u00f3n y Desarrollo"},{"id":"https://openalex.org/G5606630633","display_name":null,"funder_award_id":"21231159","funder_id":"https://openalex.org/F4320331146","funder_display_name":"Agencia Nacional de Investigaci\u00f3n y Desarrollo"},{"id":"https://openalex.org/G7170355759","display_name":null,"funder_award_id":"3170107","funder_id":"https://openalex.org/F4320338073","funder_display_name":"Fondo Nacional de Desarrollo Cient\u00edfico y Tecnol\u00f3gico"},{"id":"https://openalex.org/G7800010180","display_name":null,"funder_award_id":"2018/24293-0","funder_id":"https://openalex.org/F4320323207","funder_display_name":"Funda\u00e7\u00e3o Amaz\u00f4nia Paraense de Amparo \u00e0 Pesquisa"},{"id":"https://openalex.org/G8895916434","display_name":null,"funder_award_id":"SA772100091","funder_id":"https://openalex.org/F4320331146","funder_display_name":"Agencia Nacional de Investigaci\u00f3n y Desarrollo"}],"funders":[{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320323207","display_name":"Funda\u00e7\u00e3o Amaz\u00f4nia Paraense de Amparo \u00e0 Pesquisa","ror":"https://ror.org/00ssgrj25"},{"id":"https://openalex.org/F4320331146","display_name":"Agencia Nacional de Investigaci\u00f3n y Desarrollo","ror":null},{"id":"https://openalex.org/F4320338073","display_name":"Fondo Nacional de Desarrollo Cient\u00edfico y Tecnol\u00f3gico","ror":"https://ror.org/02ap3w078"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":71,"referenced_works":["https://openalex.org/W181348194","https://openalex.org/W1592039881","https://openalex.org/W1971652848","https://openalex.org/W1975447903","https://openalex.org/W1976848779","https://openalex.org/W1986240377","https://openalex.org/W1992041755","https://openalex.org/W1995850373","https://openalex.org/W2011092162","https://openalex.org/W2014952106","https://openalex.org/W2015688756","https://openalex.org/W2030971064","https://openalex.org/W2038636594","https://openalex.org/W2047509756","https://openalex.org/W2048489440","https://openalex.org/W2058971275","https://openalex.org/W2071579644","https://openalex.org/W2072537419","https://openalex.org/W2074978477","https://openalex.org/W2077467665","https://openalex.org/W2078374001","https://openalex.org/W2091223968","https://openalex.org/W2094278785","https://openalex.org/W2100125011","https://openalex.org/W2103815459","https://openalex.org/W2108107014","https://openalex.org/W2127463492","https://openalex.org/W2136567909","https://openalex.org/W2147122257","https://openalex.org/W2147993766","https://openalex.org/W2150981663","https://openalex.org/W2168745915","https://openalex.org/W2169678694","https://openalex.org/W2171234130","https://openalex.org/W2204230050","https://openalex.org/W2244785476","https://openalex.org/W2316564661","https://openalex.org/W2318802957","https://openalex.org/W2463208053","https://openalex.org/W2575066828","https://openalex.org/W2583768544","https://openalex.org/W2587816047","https://openalex.org/W2596982648","https://openalex.org/W2609826536","https://openalex.org/W2739232261","https://openalex.org/W2761273232","https://openalex.org/W2806664897","https://openalex.org/W2885128148","https://openalex.org/W2911847761","https://openalex.org/W2911869066","https://openalex.org/W2911997094","https://openalex.org/W2912818999","https://openalex.org/W2949223833","https://openalex.org/W2949243165","https://openalex.org/W2964841466","https://openalex.org/W2982862739","https://openalex.org/W3000181972","https://openalex.org/W3006234984","https://openalex.org/W3011894284","https://openalex.org/W3048565185","https://openalex.org/W3086801715","https://openalex.org/W3106801921","https://openalex.org/W3210035614","https://openalex.org/W4226060238","https://openalex.org/W4239632189","https://openalex.org/W4321445531","https://openalex.org/W4386151261","https://openalex.org/W4387440676","https://openalex.org/W4388015675","https://openalex.org/W4401456371","https://openalex.org/W6930744063"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W2948807893","https://openalex.org/W2899084033","https://openalex.org/W2778153218","https://openalex.org/W2748952813","https://openalex.org/W1531601525","https://openalex.org/W4391375266","https://openalex.org/W2078814861","https://openalex.org/W2527526854","https://openalex.org/W1976181487"],"abstract_inverted_index":{"Accurately":[0],"predicting":[1],"the":[2,30,75,105,115,167,171],"diverse":[3],"bound-state":[4],"conformations":[5],"of":[6,70,78,185,202],"small":[7,80,112],"molecules":[8,113],"is":[9,151],"crucial":[10],"for":[11,50,110,119,129,138,154,194],"successful":[12],"drug":[13,196],"discovery":[14,197],"and":[15,102,114,126,135],"design,":[16],"particularly":[17,152],"when":[18,92],"detailed":[19],"protein-ligand":[20],"interactions":[21],"are":[22],"unknown.":[23],"Established":[24],"tools":[25],"exist,":[26],"but":[27],"efficiently":[28,73],"exploring":[29],"vast":[31],"conformational":[32,76,159],"space":[33],"remains":[34],"challenging.":[35],"This":[36],"work":[37],"introduces":[38],"Moltiverse,":[39],"a":[40,65,79,182,191],"novel":[41],"protocol":[42],"using":[43],"enhanced":[44],"sampling":[45],"molecular":[46,186,203],"dynamics":[47],"(MD)":[48],"simulations":[49],"conformer":[51,131],"generation.":[52],"The":[53,174],"extended":[54],"adaptive":[55],"biasing":[56],"force":[57],"(eABF)":[58],"algorithm":[59,133],"combined":[60],"with":[61,157],"metadynamics,":[62],"guided":[63],"by":[64,178],"single":[66],"collective":[67],"variable":[68],"(radius":[69],"gyration,":[71],"RDGYR),":[72],"samples":[74],"landscape":[77],"molecule.":[81],"Moltiverse":[82,150,179],"demonstrates":[83],"comparable":[84],"accuracy":[85,169],"and,":[86],"in":[87,104],"some":[88],"cases,":[89],"superior":[90],"quality":[91],"benchmarked":[93],"against":[94],"established":[95],"software":[96],"like":[97],"RDKit,":[98],"CONFORGE,":[99],"Balloon,":[100],"iCon,":[101],"Conformator":[103],"Platinum":[106],"Diverse":[107],"Data":[108],"set":[109,118],"drug-like":[111],"Prime":[116],"data":[117],"macrocycles.":[120],"We":[121],"present":[122],"multiple":[123],"quantitative":[124],"metrics":[125],"statistical":[127],"analysis":[128],"robust":[130],"generation":[132],"comparisons":[134],"provide":[136],"recommendations":[137],"their":[139],"improvement":[140],"based":[141],"on":[142],"our":[143],"findings.":[144],"Our":[145],"extensive":[146],"evaluation":[147],"shows":[148],"that":[149],"effective":[153],"challenging":[155],"systems":[156],"high":[158],"flexibility,":[160],"such":[161],"as":[162,190],"macrocycles,":[163],"where":[164],"it":[165,189],"achieves":[166],"highest":[168],"among":[170],"tested":[172],"algorithms.":[173],"physics-based":[175],"approach":[176],"employed":[177],"effectively":[180],"handles":[181],"wide":[183],"range":[184],"complexities,":[187],"positioning":[188],"valuable":[192],"tool":[193],"computational":[195],"workflows":[198],"requiring":[199],"accurate":[200],"representation":[201],"flexibility.":[204]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
