{"id":"https://openalex.org/W4415449100","doi":"https://doi.org/10.1021/acs.jcim.5c00758","title":"Improving ADME Prediction with Multitask Graph Neural Networks and Assessing Explainability in Lead Optimization","display_name":"Improving ADME Prediction with Multitask Graph Neural Networks and Assessing Explainability in Lead Optimization","publication_year":2025,"publication_date":"2025-10-22","ids":{"openalex":"https://openalex.org/W4415449100","doi":"https://doi.org/10.1021/acs.jcim.5c00758","pmid":"https://pubmed.ncbi.nlm.nih.gov/41125231"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.5c00758","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c00758","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1021/acs.jcim.5c00758","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Shoma Ito","orcid":"https://orcid.org/0009-0009-1680-367X"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shoma Ito","raw_affiliation_strings":["Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto 606-8507, Japan"],"raw_orcid":"https://orcid.org/0009-0009-1680-367X","affiliations":[{"raw_affiliation_string":"Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto 606-8507, Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027799892","display_name":"Takuto Koyama","orcid":"https://orcid.org/0000-0002-9569-8370"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takuto Koyama","raw_affiliation_strings":["Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto 606-8507, Japan"],"raw_orcid":"https://orcid.org/0000-0002-9569-8370","affiliations":[{"raw_affiliation_string":"Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto 606-8507, Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053913367","display_name":"Shigeyuki Matsumoto","orcid":"https://orcid.org/0000-0001-9329-6362"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shigeyuki Matsumoto","raw_affiliation_strings":["Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto 606-8507, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto 606-8507, Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013489463","display_name":"Ryosuke Kojima","orcid":"https://orcid.org/0000-0003-1095-8864"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Ryosuke Kojima","raw_affiliation_strings":["Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto 606-8507, Japan"],"raw_orcid":"https://orcid.org/0000-0003-1095-8864","affiliations":[{"raw_affiliation_string":"Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto 606-8507, Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067063386","display_name":"Yuji Okamoto","orcid":"https://orcid.org/0000-0003-0024-549X"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yuji Okamoto","raw_affiliation_strings":["Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto 606-8507, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto 606-8507, Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011013472","display_name":"Masataka Kuroda","orcid":"https://orcid.org/0000-0003-3260-9630"},"institutions":[{"id":"https://openalex.org/I4210086383","display_name":"National Institute of Biomedical Innovation, Health and Nutrition","ror":"https://ror.org/001rkbe13","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210086383"]},{"id":"https://openalex.org/I4210164862","display_name":"Artificial Intelligence in Medicine (Canada)","ror":"https://ror.org/05p590m36","country_code":"CA","type":"company","lineage":["https://openalex.org/I4210164862"]},{"id":"https://openalex.org/I4387155982","display_name":"Mitsubishi Tanabe Pharma Corporation","ror":"https://ror.org/038ehsm73","country_code":null,"type":"company","lineage":["https://openalex.org/I168192097","https://openalex.org/I4387155982"]}],"countries":["CA","JP"],"is_corresponding":false,"raw_author_name":"Masataka Kuroda","raw_affiliation_strings":["Artificial Intelligence Center for Health and Biomedical Research","Mitsubishi Tanabe Pharma Corporation","National Institutes of Biomedical Innovation, Health and Nutrition","Mitsubishi Tanabe Pharma Corporation, Yokohama 227-0033, Japan"],"raw_orcid":"https://orcid.org/0000-0003-3260-9630","affiliations":[{"raw_affiliation_string":"Artificial Intelligence Center for Health and Biomedical Research","institution_ids":["https://openalex.org/I4210164862"]},{"raw_affiliation_string":"Mitsubishi Tanabe Pharma Corporation","institution_ids":["https://openalex.org/I4387155982"]},{"raw_affiliation_string":"National Institutes of Biomedical Innovation, Health and Nutrition","institution_ids":["https://openalex.org/I4210086383"]},{"raw_affiliation_string":"Mitsubishi Tanabe Pharma Corporation, Yokohama 227-0033, Japan","institution_ids":["https://openalex.org/I4387155982"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044560248","display_name":"Hitoshi Kawashima","orcid":"https://orcid.org/0000-0003-3612-4294"},"institutions":[{"id":"https://openalex.org/I4210086383","display_name":"National Institute of Biomedical Innovation, Health and Nutrition","ror":"https://ror.org/001rkbe13","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210086383"]},{"id":"https://openalex.org/I4210164862","display_name":"Artificial Intelligence in Medicine (Canada)","ror":"https://ror.org/05p590m36","country_code":"CA","type":"company","lineage":["https://openalex.org/I4210164862"]}],"countries":["CA","JP"],"is_corresponding":false,"raw_author_name":"Hitoshi Kawashima","raw_affiliation_strings":["Artificial Intelligence Center for Health and Biomedical Research","National Institutes of Biomedical Innovation, Health and Nutrition"],"raw_orcid":"https://orcid.org/0000-0003-3612-4294","affiliations":[{"raw_affiliation_string":"Artificial Intelligence Center for Health and Biomedical Research","institution_ids":["https://openalex.org/I4210164862"]},{"raw_affiliation_string":"National Institutes of Biomedical Innovation, Health and Nutrition","institution_ids":["https://openalex.org/I4210086383"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001988444","display_name":"Reiko Watanabe","orcid":"https://orcid.org/0000-0001-9359-8731"},"institutions":[{"id":"https://openalex.org/I4210086383","display_name":"National Institute of Biomedical Innovation, Health and Nutrition","ror":"https://ror.org/001rkbe13","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210086383"]},{"id":"https://openalex.org/I4210152009","display_name":"Protein Research Foundation","ror":"https://ror.org/03yzv7g36","country_code":"JP","type":"other","lineage":["https://openalex.org/I4210152009"]},{"id":"https://openalex.org/I4210164862","display_name":"Artificial Intelligence in Medicine (Canada)","ror":"https://ror.org/05p590m36","country_code":"CA","type":"company","lineage":["https://openalex.org/I4210164862"]}],"countries":["CA","JP"],"is_corresponding":false,"raw_author_name":"Reiko Watanabe","raw_affiliation_strings":["Artificial Intelligence Center for Health and Biomedical Research","Institute for Protein Research","National Institutes of Biomedical Innovation, Health and Nutrition","The University of Osaka","Institute for Protein Research, The University of Osaka, Suita, Osaka 565-0871, Japan"],"raw_orcid":"https://orcid.org/0000-0001-9359-8731","affiliations":[{"raw_affiliation_string":"Artificial Intelligence Center for Health and Biomedical Research","institution_ids":["https://openalex.org/I4210164862"]},{"raw_affiliation_string":"Institute for Protein Research","institution_ids":[]},{"raw_affiliation_string":"National Institutes of Biomedical Innovation, Health and Nutrition","institution_ids":["https://openalex.org/I4210086383"]},{"raw_affiliation_string":"The University of Osaka","institution_ids":[]},{"raw_affiliation_string":"Institute for Protein Research, The University of Osaka, Suita, Osaka 565-0871, Japan","institution_ids":["https://openalex.org/I4210152009"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001878736","display_name":"Tomoki Yonezawa","orcid":null},"institutions":[{"id":"https://openalex.org/I203951103","display_name":"Keio University","ror":"https://ror.org/02kn6nx58","country_code":"JP","type":"education","lineage":["https://openalex.org/I203951103"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tomoki Yonezawa","raw_affiliation_strings":["Faculty of Pharmacy","Keio University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Pharmacy","institution_ids":[]},{"raw_affiliation_string":"Keio University","institution_ids":["https://openalex.org/I203951103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019978420","display_name":"Takaaki Sumiyoshi","orcid":"https://orcid.org/0000-0002-2073-4365"},"institutions":[{"id":"https://openalex.org/I4210145583","display_name":"Bioengineering Center","ror":"https://ror.org/04f0ydx59","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210145583"]},{"id":"https://openalex.org/I56624758","display_name":"Kansai University","ror":"https://ror.org/03xg1f311","country_code":"JP","type":"education","lineage":["https://openalex.org/I56624758"]}],"countries":["JP","RU"],"is_corresponding":false,"raw_author_name":"Takaaki Sumiyoshi","raw_affiliation_strings":["Faculty of Chemistry, Materials and Bioengineering","Kansai University"],"raw_orcid":"https://orcid.org/0000-0002-2073-4365","affiliations":[{"raw_affiliation_string":"Faculty of Chemistry, Materials and Bioengineering","institution_ids":["https://openalex.org/I4210145583"]},{"raw_affiliation_string":"Kansai University","institution_ids":["https://openalex.org/I56624758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038763185","display_name":"Kazuyoshi Ikeda","orcid":"https://orcid.org/0000-0002-8433-8206"},"institutions":[{"id":"https://openalex.org/I203951103","display_name":"Keio University","ror":"https://ror.org/02kn6nx58","country_code":"JP","type":"education","lineage":["https://openalex.org/I203951103"]},{"id":"https://openalex.org/I4210129730","display_name":"RIKEN Center for Computational Science","ror":"https://ror.org/03r519674","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210129730"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kazuyoshi Ikeda","raw_affiliation_strings":["Faculty of Pharmacy","Keio University","RIKEN Center for Computational Science","RIKEN Center for Computational Science, Kobe, Hyogo 650-0047, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Pharmacy","institution_ids":[]},{"raw_affiliation_string":"Keio University","institution_ids":["https://openalex.org/I203951103"]},{"raw_affiliation_string":"RIKEN Center for Computational Science","institution_ids":["https://openalex.org/I4210129730"]},{"raw_affiliation_string":"RIKEN Center for Computational Science, Kobe, Hyogo 650-0047, Japan","institution_ids":["https://openalex.org/I4210129730"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061134485","display_name":"Kenji Mizuguchi","orcid":"https://orcid.org/0000-0003-3021-7078"},"institutions":[{"id":"https://openalex.org/I4210086383","display_name":"National Institute of Biomedical Innovation, Health and Nutrition","ror":"https://ror.org/001rkbe13","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210086383"]},{"id":"https://openalex.org/I4210152009","display_name":"Protein Research Foundation","ror":"https://ror.org/03yzv7g36","country_code":"JP","type":"other","lineage":["https://openalex.org/I4210152009"]},{"id":"https://openalex.org/I4210164862","display_name":"Artificial Intelligence in Medicine (Canada)","ror":"https://ror.org/05p590m36","country_code":"CA","type":"company","lineage":["https://openalex.org/I4210164862"]}],"countries":["CA","JP"],"is_corresponding":false,"raw_author_name":"Kenji Mizuguchi","raw_affiliation_strings":["Artificial Intelligence Center for Health and Biomedical Research","Institute for Protein Research","National Institutes of Biomedical Innovation, Health and Nutrition","The University of Osaka","Institute for Protein Research, The University of Osaka, Suita, Osaka 565-0871, Japan"],"raw_orcid":"https://orcid.org/0000-0003-3021-7078","affiliations":[{"raw_affiliation_string":"Artificial Intelligence Center for Health and Biomedical Research","institution_ids":["https://openalex.org/I4210164862"]},{"raw_affiliation_string":"Institute for Protein Research","institution_ids":[]},{"raw_affiliation_string":"National Institutes of Biomedical Innovation, Health and Nutrition","institution_ids":["https://openalex.org/I4210086383"]},{"raw_affiliation_string":"The University of Osaka","institution_ids":[]},{"raw_affiliation_string":"Institute for Protein Research, The University of Osaka, Suita, Osaka 565-0871, Japan","institution_ids":["https://openalex.org/I4210152009"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043360512","display_name":"Hiroaki Iwata","orcid":"https://orcid.org/0000-0001-9791-0008"},"institutions":[{"id":"https://openalex.org/I4210093057","display_name":"Faculty (United Kingdom)","ror":"https://ror.org/00qpxe165","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210093057"]},{"id":"https://openalex.org/I4588055","display_name":"Tottori University","ror":"https://ror.org/024yc3q36","country_code":"JP","type":"education","lineage":["https://openalex.org/I4588055"]}],"countries":["GB","JP"],"is_corresponding":true,"raw_author_name":"Hiroaki Iwata","raw_affiliation_strings":["Faculty of Medicine","Tottori University"],"raw_orcid":"https://orcid.org/0000-0001-9791-0008","affiliations":[{"raw_affiliation_string":"Faculty of Medicine","institution_ids":["https://openalex.org/I4210093057"]},{"raw_affiliation_string":"Tottori University","institution_ids":["https://openalex.org/I4588055"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046211758","display_name":"Yasushi Okuno","orcid":"https://orcid.org/0000-0003-3596-4208"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I4210129730","display_name":"RIKEN Center for Computational Science","ror":"https://ror.org/03r519674","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210129730"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Yasushi Okuno","raw_affiliation_strings":["Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto 606-8507, Japan","RIKEN Center for Computational Science","RIKEN Center for Computational Science, Kobe, Hyogo 650-0047, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto 606-8507, Japan","institution_ids":["https://openalex.org/I22299242"]},{"raw_affiliation_string":"RIKEN Center for Computational Science","institution_ids":["https://openalex.org/I4210129730"]},{"raw_affiliation_string":"RIKEN Center for Computational Science, Kobe, Hyogo 650-0047, Japan","institution_ids":["https://openalex.org/I4210129730"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":14,"corresponding_author_ids":["https://openalex.org/A5043360512","https://openalex.org/A5046211758"],"corresponding_institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4210093057","https://openalex.org/I4210129730","https://openalex.org/I4588055"],"apc_list":null,"apc_paid":null,"fwci":1.3257,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.86467814,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"65","issue":"21","first_page":"11796","last_page":"11803"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9840999841690063,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11053","display_name":"Process Optimization and Integration","score":0.9642999768257141,"subfield":{"id":"https://openalex.org/subfields/2207","display_name":"Control and Systems Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/adme","display_name":"ADME","score":0.9397000074386597},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.6341999769210815},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4586000144481659},{"id":"https://openalex.org/keywords/lead","display_name":"Lead (geology)","score":0.4081000089645386},{"id":"https://openalex.org/keywords/chemical-space","display_name":"Chemical space","score":0.3635999858379364},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.3230000138282776},{"id":"https://openalex.org/keywords/usable","display_name":"USable","score":0.31869998574256897},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.31040000915527344}],"concepts":[{"id":"https://openalex.org/C69366308","wikidata":"https://www.wikidata.org/wiki/Q2272286","display_name":"ADME","level":3,"score":0.9397000074386597},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6424000263214111},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.6341999769210815},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6093999743461609},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5217000246047974},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4586000144481659},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4449999928474426},{"id":"https://openalex.org/C2777093003","wikidata":"https://www.wikidata.org/wiki/Q6508345","display_name":"Lead (geology)","level":2,"score":0.4081000089645386},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.37770000100135803},{"id":"https://openalex.org/C99726746","wikidata":"https://www.wikidata.org/wiki/Q906396","display_name":"Chemical space","level":3,"score":0.3635999858379364},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.3230000138282776},{"id":"https://openalex.org/C2780615836","wikidata":"https://www.wikidata.org/wiki/Q2471869","display_name":"USable","level":2,"score":0.31869998574256897},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.31040000915527344},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.3052000105381012},{"id":"https://openalex.org/C2778476105","wikidata":"https://www.wikidata.org/wiki/Q628539","display_name":"Workload","level":2,"score":0.2906999886035919},{"id":"https://openalex.org/C111030470","wikidata":"https://www.wikidata.org/wiki/Q1430460","display_name":"Curse of dimensionality","level":2,"score":0.2732999920845032},{"id":"https://openalex.org/C136389625","wikidata":"https://www.wikidata.org/wiki/Q334384","display_name":"Supervised learning","level":3,"score":0.2676999866962433},{"id":"https://openalex.org/C164126121","wikidata":"https://www.wikidata.org/wiki/Q766383","display_name":"Quantitative structure\u2013activity relationship","level":2,"score":0.2671999931335449},{"id":"https://openalex.org/C51632099","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Training set","level":2,"score":0.2623000144958496},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.2621000111103058},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.2603999972343445},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.2574000060558319}],"mesh":[{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1021/acs.jcim.5c00758","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c00758","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:41125231","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41125231","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:europepmc.org:11417886","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12606635","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1021/acs.jcim.5c00758","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c00758","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5680769591","display_name":null,"funder_award_id":"JP22nk0101111","funder_id":"https://openalex.org/F4320311405","funder_display_name":"Japan Agency for Medical Research and Development"},{"id":"https://openalex.org/G7598952796","display_name":null,"funder_award_id":"JP24H01771","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320310756","display_name":"Japan Research Foundation for Clinical Pharmacology","ror":"https://ror.org/02900by63"},{"id":"https://openalex.org/F4320311405","display_name":"Japan Agency for Medical Research and Development","ror":"https://ror.org/004rtk039"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W1663154925","https://openalex.org/W1969927552","https://openalex.org/W1988037271","https://openalex.org/W2021444228","https://openalex.org/W2049812048","https://openalex.org/W2273267066","https://openalex.org/W2402258526","https://openalex.org/W2618890751","https://openalex.org/W2806834952","https://openalex.org/W2809247499","https://openalex.org/W2919182221","https://openalex.org/W2944466104","https://openalex.org/W2944700152","https://openalex.org/W2955196750","https://openalex.org/W3127639205","https://openalex.org/W3177077864","https://openalex.org/W4220982113","https://openalex.org/W4292616203","https://openalex.org/W4315778078","https://openalex.org/W4316039957","https://openalex.org/W4320929222","https://openalex.org/W4377232456","https://openalex.org/W4377982332","https://openalex.org/W4384397860","https://openalex.org/W4393936599","https://openalex.org/W4407923247"],"related_works":[],"abstract_inverted_index":{"Early":[0],"evaluation":[1],"of":[2,37,76,97,130,179,190],"absorption,":[3],"distribution,":[4],"metabolism,":[5],"and":[6,19,73,153,159,197],"excretion":[7],"(ADME)":[8],"properties":[9],"is":[10],"crucial":[11],"for":[12,47,81,177],"streamlining":[13],"drug":[14],"development.":[15],"Traditional":[16],"in":[17,20,44,56,65,193],"vivo":[18],"vitro":[21],"approaches":[22,217],"are":[23,50],"often":[24],"expensive.":[25],"Moreover,":[26],"during":[27],"lead":[28,82,155,199],"optimization,":[29],"these":[30,105],"methods":[31,46,58],"rely":[32],"heavily":[33],"on":[34,112],"the":[35,79,128,144,166,174,180,191,203],"expertise":[36],"specialists,":[38],"leading":[39],"to":[40,84,103,126,137,148,157,165],"efficiency":[41],"challenges.":[42,106],"Consequently,":[43],"silico":[45,57],"ADME":[48,71,86,101,168,182],"prediction":[49],"attracting":[51],"increasing":[52],"attention.":[53],"However,":[54],"existing":[55],"face":[59],"two":[60],"major":[61],"issues:":[62],"a":[63,74,113],"decline":[64],"predictive":[66],"performance":[67,176],"caused":[68],"by":[69,222],"limited":[70],"data":[72,150],"lack":[75],"clarity":[77],"regarding":[78],"rationale":[80],"optimization":[83,156,200],"improve":[85],"properties.":[87],"In":[88,140],"this":[89],"study,":[90],"we":[91,142],"built":[92],"an":[93],"AI":[94],"model":[95,172],"capable":[96],"predicting":[98],"ten":[99,181],"different":[100],"parameters":[102,183],"overcome":[104],"Our":[107,170],"training":[108],"approach":[109],"was":[110],"based":[111],"graph":[114],"neural":[115],"network":[116],"combining":[117],"multitask":[118],"learning,":[119],"which":[120],"shares":[121],"information":[122],"across":[123],"multiple":[124],"tasks":[125],"increase":[127],"number":[129],"usable":[131],"samples,":[132],"with":[133,185,208],"fine-tuning":[134],"that":[135,202,215],"adapts":[136],"each":[138,161],"task.":[139],"addition,":[141],"applied":[143],"integrated":[145],"gradients":[146],"method":[147],"compound":[149],"collected":[151],"before":[152,196],"after":[154,198],"quantify":[158],"interpret":[160],"input":[162],"feature's":[163],"contribution":[164],"predicted":[167],"values.":[169],"proposed":[171],"achieved":[173],"highest":[175],"seven":[178],"compared":[184],"conventional":[186],"methods.":[187],"Furthermore,":[188],"visualization":[189],"changes":[192],"chemical":[194,210],"structures":[195],"revealed":[201],"model's":[204],"explanations":[205],"aligned":[206],"well":[207],"established":[209],"insights.":[211],"These":[212],"results":[213],"suggest":[214],"data-driven":[216],"may":[218],"assist":[219],"molecular":[220],"design":[221],"providing":[223],"complementary":[224],"insights":[225],"into":[226],"empirical":[227],"rules.":[228]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-24T00:00:00"}
