{"id":"https://openalex.org/W4412697609","doi":"https://doi.org/10.1021/acs.jcim.5c00756","title":"MutPNI: A Unified Model Architecture for Accurately Predicting the Effects of Mutations on Protein-Nucleic Acid Interactions","display_name":"MutPNI: A Unified Model Architecture for Accurately Predicting the Effects of Mutations on Protein-Nucleic Acid Interactions","publication_year":2025,"publication_date":"2025-07-28","ids":{"openalex":"https://openalex.org/W4412697609","doi":"https://doi.org/10.1021/acs.jcim.5c00756","pmid":"https://pubmed.ncbi.nlm.nih.gov/40719555"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.5c00756","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c00756","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101916749","display_name":"Zihao Yan","orcid":"https://orcid.org/0000-0002-8131-4663"},"institutions":[{"id":"https://openalex.org/I36399199","display_name":"Nanjing University of Science and Technology","ror":"https://ror.org/00xp9wg62","country_code":"CN","type":"education","lineage":["https://openalex.org/I36399199"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zihao Yan","raw_affiliation_strings":["Nanjing University of Science and Technology","School of Computer Science and Engineering"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nanjing University of Science and Technology","institution_ids":["https://openalex.org/I36399199"]},{"raw_affiliation_string":"School of Computer Science and Engineering","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059460328","display_name":"Fang Ge","orcid":"https://orcid.org/0000-0001-5792-5379"},"institutions":[{"id":"https://openalex.org/I41198531","display_name":"Nanjing University of Posts and Telecommunications","ror":"https://ror.org/043bpky34","country_code":"CN","type":"education","lineage":["https://openalex.org/I41198531"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fang Ge","raw_affiliation_strings":["State Key Laboratory of Flexible Electronics (LoFE) & Institute of Advanced Materials (IAM), Nanjing University of Posts & Telecommunications, 9 Wenyuan Road, Nanjing 210023, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Flexible Electronics (LoFE) & Institute of Advanced Materials (IAM), Nanjing University of Posts & Telecommunications, 9 Wenyuan Road, Nanjing 210023, China","institution_ids":["https://openalex.org/I41198531"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100386226","display_name":"Ying Zhang","orcid":"https://orcid.org/0000-0003-1792-0121"},"institutions":[{"id":"https://openalex.org/I36399199","display_name":"Nanjing University of Science and Technology","ror":"https://ror.org/00xp9wg62","country_code":"CN","type":"education","lineage":["https://openalex.org/I36399199"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ying Zhang","raw_affiliation_strings":["Nanjing University of Science and Technology","School of Computer Science and Engineering"],"raw_orcid":"https://orcid.org/0000-0003-1792-0121","affiliations":[{"raw_affiliation_string":"Nanjing University of Science and Technology","institution_ids":["https://openalex.org/I36399199"]},{"raw_affiliation_string":"School of Computer Science and Engineering","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087287145","display_name":"Yan He","orcid":"https://orcid.org/0000-0003-4357-4082"},"institutions":[{"id":"https://openalex.org/I167027274","display_name":"Nanjing Forestry University","ror":"https://ror.org/03m96p165","country_code":"CN","type":"education","lineage":["https://openalex.org/I167027274"]},{"id":"https://openalex.org/I4210164862","display_name":"Artificial Intelligence in Medicine (Canada)","ror":"https://ror.org/05p590m36","country_code":"CA","type":"company","lineage":["https://openalex.org/I4210164862"]}],"countries":["CA","CN"],"is_corresponding":false,"raw_author_name":"He Yan","raw_affiliation_strings":["College of Information Science and Technology & Artificial Intelligence","Nanjing Forestry University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Science and Technology & Artificial Intelligence","institution_ids":["https://openalex.org/I4210164862"]},{"raw_affiliation_string":"Nanjing Forestry University","institution_ids":["https://openalex.org/I167027274"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100351184","display_name":"Yan Liu","orcid":"https://orcid.org/0000-0003-4881-8429"},"institutions":[{"id":"https://openalex.org/I78978612","display_name":"Yangzhou University","ror":"https://ror.org/03tqb8s11","country_code":"CN","type":"education","lineage":["https://openalex.org/I78978612"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan Liu","raw_affiliation_strings":["Department of Computer Science","Yangzhou University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science","institution_ids":[]},{"raw_affiliation_string":"Yangzhou University","institution_ids":["https://openalex.org/I78978612"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052610760","display_name":"Yiheng Zhu","orcid":"https://orcid.org/0000-0002-3857-1533"},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yi-Heng Zhu","raw_affiliation_strings":["College of Artificial Intelligence","Nanjing Agricultural University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Artificial Intelligence","institution_ids":[]},{"raw_affiliation_string":"Nanjing Agricultural University","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012709797","display_name":"Jiangning Song","orcid":"https://orcid.org/0000-0001-8031-9086"},"institutions":[{"id":"https://openalex.org/I2799424032","display_name":"Discovery Institute","ror":"https://ror.org/05t8s3y29","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799424032"]},{"id":"https://openalex.org/I2801239119","display_name":"Australian Regenerative Medicine Institute","ror":"https://ror.org/02qa5kg76","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2801037857","https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU","US"],"is_corresponding":true,"raw_author_name":"Jiangning Song","raw_affiliation_strings":["Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology","Monash University"],"raw_orcid":"https://orcid.org/0000-0001-8031-9086","affiliations":[{"raw_affiliation_string":"Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology","institution_ids":["https://openalex.org/I2799424032"]},{"raw_affiliation_string":"Monash University","institution_ids":["https://openalex.org/I2801239119","https://openalex.org/I56590836"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008960436","display_name":"Dong\u2010Jun Yu","orcid":"https://orcid.org/0000-0002-6786-8053"},"institutions":[{"id":"https://openalex.org/I36399199","display_name":"Nanjing University of Science and Technology","ror":"https://ror.org/00xp9wg62","country_code":"CN","type":"education","lineage":["https://openalex.org/I36399199"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Dong-Jun Yu","raw_affiliation_strings":["Nanjing University of Science and Technology","School of Computer Science and Engineering"],"raw_orcid":"https://orcid.org/0000-0002-6786-8053","affiliations":[{"raw_affiliation_string":"Nanjing University of Science and Technology","institution_ids":["https://openalex.org/I36399199"]},{"raw_affiliation_string":"School of Computer Science and Engineering","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5008960436","https://openalex.org/A5012709797"],"corresponding_institution_ids":["https://openalex.org/I2799424032","https://openalex.org/I2801239119","https://openalex.org/I36399199","https://openalex.org/I56590836"],"apc_list":null,"apc_paid":null,"fwci":1.4227,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.82393978,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"65","issue":"15","first_page":"8335","last_page":"8344"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6592628955841064},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6013039350509644},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5805450677871704},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.5009739398956299},{"id":"https://openalex.org/keywords/missense-mutation","display_name":"Missense mutation","score":0.47085732221603394},{"id":"https://openalex.org/keywords/rna-binding-protein","display_name":"RNA-binding protein","score":0.4275061786174774},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.39266839623451233},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.37604808807373047},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3645437955856323},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3473075032234192},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3381669819355011},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.32502448558807373},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.2969186007976532},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1573905050754547}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6592628955841064},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6013039350509644},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5805450677871704},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5009739398956299},{"id":"https://openalex.org/C75563809","wikidata":"https://www.wikidata.org/wiki/Q2656896","display_name":"Missense mutation","level":4,"score":0.47085732221603394},{"id":"https://openalex.org/C41282012","wikidata":"https://www.wikidata.org/wiki/Q3928341","display_name":"RNA-binding protein","level":4,"score":0.4275061786174774},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.39266839623451233},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.37604808807373047},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3645437955856323},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3473075032234192},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3381669819355011},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.32502448558807373},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.2969186007976532},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1573905050754547}],"mesh":[{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.5c00756","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c00756","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:40719555","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40719555","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.4300000071525574}],"awards":[{"id":"https://openalex.org/G1351919236","display_name":null,"funder_award_id":"62306142","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1494367128","display_name":null,"funder_award_id":"YDZX2025024","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G1702080893","display_name":null,"funder_award_id":"62372234","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2869694342","display_name":null,"funder_award_id":"NY223062","funder_id":"https://openalex.org/F4320323268","funder_display_name":"Nanjing University of Posts and Telecommunications"},{"id":"https://openalex.org/G4942489852","display_name":null,"funder_award_id":"NY224158","funder_id":"https://openalex.org/F4320323268","funder_display_name":"Nanjing University of Posts and Telecommunications"},{"id":"https://openalex.org/G6975977380","display_name":null,"funder_award_id":"BK20201304","funder_id":"https://openalex.org/F4320322769","funder_display_name":"Natural Science Foundation of Jiangsu Province"},{"id":"https://openalex.org/G7445100817","display_name":null,"funder_award_id":"24KJB520041","funder_id":"https://openalex.org/F4320335440","funder_display_name":"Natural Science Research of Jiangsu Higher Education Institutions of China"},{"id":"https://openalex.org/G7719334545","display_name":null,"funder_award_id":"62072243","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8733336601","display_name":null,"funder_award_id":"62402227","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320320971","display_name":"Monash University","ror":"https://ror.org/02bfwt286"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322769","display_name":"Natural Science Foundation of Jiangsu Province","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320323268","display_name":"Nanjing University of Posts and Telecommunications","ror":"https://ror.org/043bpky34"},{"id":"https://openalex.org/F4320335440","display_name":"Natural Science Research of Jiangsu Higher Education Institutions of China","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":56,"referenced_works":["https://openalex.org/W1408885899","https://openalex.org/W1977413761","https://openalex.org/W2012627860","https://openalex.org/W2023490488","https://openalex.org/W2029962507","https://openalex.org/W2099672241","https://openalex.org/W2163279260","https://openalex.org/W2164656441","https://openalex.org/W2605361745","https://openalex.org/W2766808155","https://openalex.org/W2769544142","https://openalex.org/W2777941847","https://openalex.org/W2788217325","https://openalex.org/W2798552692","https://openalex.org/W2886856160","https://openalex.org/W2904602199","https://openalex.org/W2920817727","https://openalex.org/W3046260865","https://openalex.org/W3081428414","https://openalex.org/W3083008290","https://openalex.org/W3091024877","https://openalex.org/W3117622225","https://openalex.org/W3130260997","https://openalex.org/W3134574975","https://openalex.org/W3155248445","https://openalex.org/W3177500196","https://openalex.org/W3177828909","https://openalex.org/W3184229885","https://openalex.org/W3191108515","https://openalex.org/W3204054344","https://openalex.org/W3210842402","https://openalex.org/W4200085095","https://openalex.org/W4200205682","https://openalex.org/W4206120034","https://openalex.org/W4283366007","https://openalex.org/W4288066876","https://openalex.org/W4289779055","https://openalex.org/W4300861364","https://openalex.org/W4311860868","https://openalex.org/W4313907724","https://openalex.org/W4317434604","https://openalex.org/W4327550249","https://openalex.org/W4366465247","https://openalex.org/W4385737488","https://openalex.org/W4387096312","https://openalex.org/W4387966090","https://openalex.org/W4388024559","https://openalex.org/W4388535039","https://openalex.org/W4388578439","https://openalex.org/W4388929165","https://openalex.org/W4390046779","https://openalex.org/W4391680077","https://openalex.org/W4391966816","https://openalex.org/W4401255821","https://openalex.org/W4402452649","https://openalex.org/W4405563164"],"related_works":["https://openalex.org/W3004443428","https://openalex.org/W4361004911","https://openalex.org/W1971719088","https://openalex.org/W2625862723","https://openalex.org/W2612068534","https://openalex.org/W4289526060","https://openalex.org/W2594013754","https://openalex.org/W2388990391","https://openalex.org/W2032061938","https://openalex.org/W2034409080"],"abstract_inverted_index":{"Missense":[0],"mutations":[1,51,124],"in":[2,23,52,125,140],"DNA-":[3],"and":[4,12,28,32,54,67,72,98,102,128,169],"RNA-binding":[5,55],"proteins":[6],"can":[7],"disrupt":[8],"vital":[9],"interaction":[10],"networks":[11],"frequently":[13],"lead":[14],"to":[15,92,122,154],"disease.":[16],"However,":[17],"current":[18],"methods":[19],"for":[20,152,163,172,179],"predicting":[21],"changes":[22],"binding":[24],"affinity":[25],"between":[26],"protein-DNA":[27,127],"protein-RNA":[29,129],"remain":[30],"fragmented":[31],"inefficient.":[33],"In":[34],"this":[35],"study,":[36],"we":[37,60],"introduce":[38],"MutPNI,":[39],"a":[40,87,160],"novel":[41],"general":[42],"regression":[43],"model":[44,85,116],"that":[45],"predicts":[46],"the":[47,84,114,141,146],"effects":[48],"of":[49,96],"missense":[50],"DNA-binding":[53],"proteins.":[56],"To":[57],"achieve":[58],"this,":[59],"integrate":[61],"feature":[62],"embeddings":[63],"from":[64,77],"pretrained":[65],"ESM-2":[66],"ProtT5":[68],"protein":[69,79],"language":[70],"models":[71],"incorporate":[73],"energy":[74],"terms":[75],"derived":[76],"mutant":[78],"structures.":[80],"We":[81],"then":[82],"train":[83],"through":[86],"Transformer-based":[88],"encoder,":[89],"enabling":[90],"it":[91],"attain":[93],"PCC":[94],"values":[95],"0.661":[97],"0.701":[99],"on":[100,113],"DNA":[101],"RNA":[103],"benchmark":[104],"test":[105],"sets,":[106,158],"respectively.":[107],"Furthermore,":[108],"our":[109],"final":[110],"strategy":[111],"relies":[112],"same":[115],"architecture,":[117],"rather":[118],"than":[119],"identical":[120],"parameters,":[121],"predict":[123],"both":[126],"complexes,":[130],"thereby":[131],"highlighting":[132],"shared":[133],"features":[134],"as":[135,137],"well":[136],"key":[138],"distinctions":[139],"two":[142],"data":[143,157,170],"sets.":[144],"Finally,":[145],"method's":[147],"high":[148],"computational":[149],"efficiency":[150],"allows":[151],"scaling":[153],"large":[155],"biological":[156],"offering":[159],"robust":[161],"platform":[162],"future":[164],"research.":[165],"The":[166],"web":[167],"server":[168],"sets":[171],"MutPNI":[173],"are":[174],"publicly":[175],"available":[176],"at":[177],"https://csbioinformatics.njust.edu.cn/mutpni/":[178],"academic":[180],"use.":[181]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
