{"id":"https://openalex.org/W4409739785","doi":"https://doi.org/10.1021/acs.jcim.5c00394","title":"A Database for Large-Scale Docking and Experimental Results","display_name":"A Database for Large-Scale Docking and Experimental Results","publication_year":2025,"publication_date":"2025-04-24","ids":{"openalex":"https://openalex.org/W4409739785","doi":"https://doi.org/10.1021/acs.jcim.5c00394","pmid":"https://pubmed.ncbi.nlm.nih.gov/40273444"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.5c00394","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c00394","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12226175/","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5114153331","display_name":"Brendan W. Hall","orcid":"https://orcid.org/0000-0003-1616-1303"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brendan W. Hall","raw_affiliation_strings":["Department of Pharmaceutical Chemistry","University of California, San Francisco"],"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Chemistry","institution_ids":[]},{"raw_affiliation_string":"University of California, San Francisco","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006908002","display_name":"Tia A. Tummino","orcid":"https://orcid.org/0000-0001-9155-820X"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tia A. Tummino","raw_affiliation_strings":["Department of Pharmaceutical Chemistry","University of California, San Francisco"],"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Chemistry","institution_ids":[]},{"raw_affiliation_string":"University of California, San Francisco","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090904857","display_name":"Khanh Tang","orcid":null},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Khanh Tang","raw_affiliation_strings":["Department of Pharmaceutical Chemistry","University of California, San Francisco"],"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Chemistry","institution_ids":[]},{"raw_affiliation_string":"University of California, San Francisco","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071344692","display_name":"Olivier Mailhot","orcid":"https://orcid.org/0000-0002-7533-4561"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Olivier Mailhot","raw_affiliation_strings":["Department of Pharmaceutical Chemistry","University of California, San Francisco"],"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Chemistry","institution_ids":[]},{"raw_affiliation_string":"University of California, San Francisco","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087068264","display_name":"Mar Castanon","orcid":null},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mar Castanon","raw_affiliation_strings":["Department of Pharmaceutical Chemistry","University of California, San Francisco"],"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Chemistry","institution_ids":[]},{"raw_affiliation_string":"University of California, San Francisco","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054045417","display_name":"John J. Irwin","orcid":"https://orcid.org/0000-0002-1195-6417"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"John J. Irwin","raw_affiliation_strings":["Department of Pharmaceutical Chemistry","University of California, San Francisco"],"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Chemistry","institution_ids":[]},{"raw_affiliation_string":"University of California, San Francisco","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009419179","display_name":"Brian K. Shoichet","orcid":"https://orcid.org/0000-0002-6098-7367"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Brian K. Shoichet","raw_affiliation_strings":["Department of Pharmaceutical Chemistry","University of California, San Francisco"],"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Chemistry","institution_ids":[]},{"raw_affiliation_string":"University of California, San Francisco","institution_ids":["https://openalex.org/I180670191"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5009419179","https://openalex.org/A5054045417"],"corresponding_institution_ids":["https://openalex.org/I180670191"],"apc_list":null,"apc_paid":null,"fwci":13.1912,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.99068805,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"65","issue":"9","first_page":"4458","last_page":"4467"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11192","display_name":"Underwater Vehicles and Communication Systems","score":0.9847999811172485,"subfield":{"id":"https://openalex.org/subfields/2212","display_name":"Ocean Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11192","display_name":"Underwater Vehicles and Communication Systems","score":0.9847999811172485,"subfield":{"id":"https://openalex.org/subfields/2212","display_name":"Ocean Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11082","display_name":"Spacecraft Dynamics and Control","score":0.9829000234603882,"subfield":{"id":"https://openalex.org/subfields/2202","display_name":"Aerospace Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12449","display_name":"Spacecraft Design and Technology","score":0.9702000021934509,"subfield":{"id":"https://openalex.org/subfields/2202","display_name":"Aerospace Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.6213930249214172},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.563180685043335},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5580468773841858},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.42627379298210144},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3301587700843811},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.11305516958236694},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.09336382150650024},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.05879691243171692}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.6213930249214172},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.563180685043335},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5580468773841858},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.42627379298210144},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3301587700843811},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.11305516958236694},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.09336382150650024},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.05879691243171692},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1021/acs.jcim.5c00394","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c00394","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:40273444","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40273444","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:europepmc.org:11410565","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12226175","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:12226175","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12226175/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Chem Inf Model","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:12226175","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12226175/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Chem Inf Model","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3813805858","display_name":null,"funder_award_id":"R01GM71896","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G8836501443","display_name":null,"funder_award_id":"R35GM122481","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":51,"referenced_works":["https://openalex.org/W1968319881","https://openalex.org/W2058835307","https://openalex.org/W2059097089","https://openalex.org/W2059614986","https://openalex.org/W2132629607","https://openalex.org/W2148512505","https://openalex.org/W2605952223","https://openalex.org/W2608559058","https://openalex.org/W2781821160","https://openalex.org/W2783191436","https://openalex.org/W2889677957","https://openalex.org/W2912171584","https://openalex.org/W2963469388","https://openalex.org/W2966357564","https://openalex.org/W3004731690","https://openalex.org/W3010016408","https://openalex.org/W3027975282","https://openalex.org/W3029836473","https://openalex.org/W3112474878","https://openalex.org/W3113748800","https://openalex.org/W3120407713","https://openalex.org/W3126031592","https://openalex.org/W3135642867","https://openalex.org/W3154018702","https://openalex.org/W3159598019","https://openalex.org/W4200233821","https://openalex.org/W4200289210","https://openalex.org/W4221045671","https://openalex.org/W4223920159","https://openalex.org/W4281381643","https://openalex.org/W4290075791","https://openalex.org/W4297995910","https://openalex.org/W4310603653","https://openalex.org/W4311612485","https://openalex.org/W4313484931","https://openalex.org/W4316507591","https://openalex.org/W4323530560","https://openalex.org/W4367040840","https://openalex.org/W4367672738","https://openalex.org/W4381839382","https://openalex.org/W4386346641","https://openalex.org/W4387603648","https://openalex.org/W4388729991","https://openalex.org/W4389395169","https://openalex.org/W4390221451","https://openalex.org/W4391431291","https://openalex.org/W4396948746","https://openalex.org/W4402625758","https://openalex.org/W4403102042","https://openalex.org/W4403922087","https://openalex.org/W4406034631"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"The":[0],"rapid":[1],"expansion":[2],"of":[3,24,42,133,180],"readily":[4],"accessible":[5],"compounds":[6,92],"over":[7],"the":[8,33,40,54,103,109,124,134,171,177,198,204],"past":[9],"six":[10],"years":[11],"has":[12],"transformed":[13],"molecular":[14],"docking,":[15],"improving":[16],"hit":[17],"rates":[18],"and":[19,45,76,90,121,165],"affinities.":[20],"While":[21],"many":[22],"millions":[23],"molecules":[25,88,128],"may":[26],"score":[27],"well":[28],"in":[29,137],"a":[30,64,96],"docking":[31,119,163],"campaign,":[32],"results":[34,79],"are":[35],"rarely":[36],"fully":[37],"shared,":[38],"hindering":[39],"benchmarking":[41],"machine":[43,114],"learning":[44,115],"chemical":[46,56],"space":[47],"exploration":[48],"methods":[49,194],"that":[50,100],"seek":[51],"to":[52,68,102,112,117,122,169,187],"explore":[53],"expanding":[55],"spaces.":[57],"To":[58],"address":[59],"this":[60],"gap,":[61],"we":[62,107],"develop":[63,192],"website":[65],"providing":[66],"access":[67],"recent":[69],"large":[70],"library":[71],"campaigns,":[72],"including":[73],"poses,":[74],"scores,":[75],"<i>in":[77],"vitro</i>":[78],"for":[80,193],"campaigns":[81],"against":[82],"11":[83],"targets,":[84],"with":[85,162],"6.3":[86],"billion":[87],"docked":[89],"3729":[91],"experimentally":[93],"tested.":[94],"In":[95],"simple":[97,199],"proof-of-concept":[98,139,200],"study":[99],"speaks":[101],"new":[104,110,172],"library's":[105],"utility,":[106],"use":[108],"database":[111,205],"train":[113,148],"models":[116,147,157],"predict":[118],"scores":[120,164],"find":[123],"top":[125,178],"0.01%":[126,179],"scoring":[127],"while":[129],"evaluating":[130],"only":[131],"1%":[132],"library.":[135],"Even":[136],"these":[138,190],"studies,":[140],"some":[141],"interesting":[142,186],"trends":[143,191],"emerge:":[144],"unsurprisingly,":[145],"as":[146],"on":[149],"larger":[150],"sets,":[151],"they":[152],"perform":[153],"better;":[154],"less":[155],"expectedly,":[156],"could":[158],"achieve":[159],"high":[160],"correlations":[161],"yet":[166],"still":[167],"fail":[168],"enrich":[170],"docking-discovered":[173],"ligands,":[174],"or":[175],"even":[176],"docking-ranked":[181],"molecules.":[182],"It":[183],"will":[184],"be":[185],"see":[188],"how":[189],"more":[195],"sophisticated":[196],"than":[197],"studies":[201],"undertaken":[202],"here;":[203],"is":[206],"openly":[207],"available":[208],"at":[209],"lsd.docking.org.":[210]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
