{"id":"https://openalex.org/W4412727780","doi":"https://doi.org/10.1021/acs.jcim.5c00354","title":"Representation of Molecules by Sequences of Instructions","display_name":"Representation of Molecules by Sequences of Instructions","publication_year":2025,"publication_date":"2025-07-28","ids":{"openalex":"https://openalex.org/W4412727780","doi":"https://doi.org/10.1021/acs.jcim.5c00354","pmid":"https://pubmed.ncbi.nlm.nih.gov/40720985"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.5c00354","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c00354","pdf_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.5c00354?ref=article_openPDF","source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.5c00354?ref=article_openPDF","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078854559","display_name":"Karl Thurnhofer\u2010Hemsi","orcid":"https://orcid.org/0000-0001-6519-1213"},"institutions":[{"id":"https://openalex.org/I4210164724","display_name":"Instituto de Investigaci\u00f3n Biom\u00e9dica de M\u00e1laga","ror":"https://ror.org/05n3asa33","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210164724"]},{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Karl Thurnhofer-Hemsi","raw_affiliation_strings":["Biomedic Research Institute of M\u00e1laga, IBIMA Plataforma BIONAND, C/Doctor Miguel D\u00edaz Recio, 28, M\u00e1laga 29010, Spain","ITIS Software, Universidad de M\u00e1laga, C/Arquitecto Francisco Pe\u00f1alosa 18, M\u00e1laga 29010, Spain"],"raw_orcid":"https://orcid.org/0000-0001-6519-1213","affiliations":[{"raw_affiliation_string":"Biomedic Research Institute of M\u00e1laga, IBIMA Plataforma BIONAND, C/Doctor Miguel D\u00edaz Recio, 28, M\u00e1laga 29010, Spain","institution_ids":["https://openalex.org/I4210164724"]},{"raw_affiliation_string":"ITIS Software, Universidad de M\u00e1laga, C/Arquitecto Francisco Pe\u00f1alosa 18, M\u00e1laga 29010, Spain","institution_ids":["https://openalex.org/I82767444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003044969","display_name":"Iv\u00e1n Garc\u00eda\u2010Aguilar","orcid":"https://orcid.org/0000-0001-5476-6704"},"institutions":[{"id":"https://openalex.org/I4210164724","display_name":"Instituto de Investigaci\u00f3n Biom\u00e9dica de M\u00e1laga","ror":"https://ror.org/05n3asa33","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210164724"]},{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Iv\u00e1n Garc\u00eda-Aguilar","raw_affiliation_strings":["Biomedic Research Institute of M\u00e1laga, IBIMA Plataforma BIONAND, C/Doctor Miguel D\u00edaz Recio, 28, M\u00e1laga 29010, Spain","ITIS Software, Universidad de M\u00e1laga, C/Arquitecto Francisco Pe\u00f1alosa 18, M\u00e1laga 29010, Spain"],"raw_orcid":"https://orcid.org/0000-0001-5476-6704","affiliations":[{"raw_affiliation_string":"Biomedic Research Institute of M\u00e1laga, IBIMA Plataforma BIONAND, C/Doctor Miguel D\u00edaz Recio, 28, M\u00e1laga 29010, Spain","institution_ids":["https://openalex.org/I4210164724"]},{"raw_affiliation_string":"ITIS Software, Universidad de M\u00e1laga, C/Arquitecto Francisco Pe\u00f1alosa 18, M\u00e1laga 29010, Spain","institution_ids":["https://openalex.org/I82767444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102905386","display_name":"Jos\u00e9 David Fern\u00e1ndez-Rodr\u00edguez","orcid":"https://orcid.org/0000-0003-3702-2230"},"institutions":[{"id":"https://openalex.org/I4210164724","display_name":"Instituto de Investigaci\u00f3n Biom\u00e9dica de M\u00e1laga","ror":"https://ror.org/05n3asa33","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210164724"]},{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Jos\u00e9 David Fern\u00e1ndez-Rodriguez","raw_affiliation_strings":["Biomedic Research Institute of M\u00e1laga, IBIMA Plataforma BIONAND, C/Doctor Miguel D\u00edaz Recio, 28, M\u00e1laga 29010, Spain","ITIS Software, Universidad de M\u00e1laga, C/Arquitecto Francisco Pe\u00f1alosa 18, M\u00e1laga 29010, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedic Research Institute of M\u00e1laga, IBIMA Plataforma BIONAND, C/Doctor Miguel D\u00edaz Recio, 28, M\u00e1laga 29010, Spain","institution_ids":["https://openalex.org/I4210164724"]},{"raw_affiliation_string":"ITIS Software, Universidad de M\u00e1laga, C/Arquitecto Francisco Pe\u00f1alosa 18, M\u00e1laga 29010, Spain","institution_ids":["https://openalex.org/I82767444"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091243468","display_name":"Ezequiel L\u00f3pez\u2010Rubio","orcid":"https://orcid.org/0000-0001-8231-5687"},"institutions":[{"id":"https://openalex.org/I4210164724","display_name":"Instituto de Investigaci\u00f3n Biom\u00e9dica de M\u00e1laga","ror":"https://ror.org/05n3asa33","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210164724"]},{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Ezequiel L\u00f3pez-Rubio","raw_affiliation_strings":["Biomedic Research Institute of M\u00e1laga, IBIMA Plataforma BIONAND, C/Doctor Miguel D\u00edaz Recio, 28, M\u00e1laga 29010, Spain","ITIS Software, Universidad de M\u00e1laga, C/Arquitecto Francisco Pe\u00f1alosa 18, M\u00e1laga 29010, Spain"],"raw_orcid":"https://orcid.org/0000-0001-8231-5687","affiliations":[{"raw_affiliation_string":"Biomedic Research Institute of M\u00e1laga, IBIMA Plataforma BIONAND, C/Doctor Miguel D\u00edaz Recio, 28, M\u00e1laga 29010, Spain","institution_ids":["https://openalex.org/I4210164724"]},{"raw_affiliation_string":"ITIS Software, Universidad de M\u00e1laga, C/Arquitecto Francisco Pe\u00f1alosa 18, M\u00e1laga 29010, Spain","institution_ids":["https://openalex.org/I82767444"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5003044969","https://openalex.org/A5078854559","https://openalex.org/A5091243468","https://openalex.org/A5102905386"],"corresponding_institution_ids":["https://openalex.org/I4210164724","https://openalex.org/I82767444"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.185673,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"65","issue":"15","first_page":"7936","last_page":"7955"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9811999797821045,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13297","display_name":"History and advancements in chemistry","score":0.9811999797821045,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.7748194336891174},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7377080321311951},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.7082395553588867},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6254570484161377},{"id":"https://openalex.org/keywords/notation","display_name":"Notation","score":0.6188375949859619},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.6129456162452698},{"id":"https://openalex.org/keywords/edit-distance","display_name":"Edit distance","score":0.46949270367622375},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.37921470403671265},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.20103809237480164},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.16177025437355042},{"id":"https://openalex.org/keywords/theoretical-physics","display_name":"Theoretical physics","score":0.09782451391220093},{"id":"https://openalex.org/keywords/arithmetic","display_name":"Arithmetic","score":0.08959072828292847},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.08360099792480469}],"concepts":[{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.7748194336891174},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7377080321311951},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.7082395553588867},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6254570484161377},{"id":"https://openalex.org/C45357846","wikidata":"https://www.wikidata.org/wiki/Q2001982","display_name":"Notation","level":2,"score":0.6188375949859619},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.6129456162452698},{"id":"https://openalex.org/C44359876","wikidata":"https://www.wikidata.org/wiki/Q5338467","display_name":"Edit distance","level":2,"score":0.46949270367622375},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.37921470403671265},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.20103809237480164},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.16177025437355042},{"id":"https://openalex.org/C33332235","wikidata":"https://www.wikidata.org/wiki/Q18362","display_name":"Theoretical physics","level":1,"score":0.09782451391220093},{"id":"https://openalex.org/C94375191","wikidata":"https://www.wikidata.org/wiki/Q11205","display_name":"Arithmetic","level":1,"score":0.08959072828292847},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.08360099792480469},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000080911","descriptor_name":"Cheminformatics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000080911","descriptor_name":"Cheminformatics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000080911","descriptor_name":"Cheminformatics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1021/acs.jcim.5c00354","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c00354","pdf_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.5c00354?ref=article_openPDF","source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:40720985","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40720985","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:riuma.uma.es:10630/39598","is_oa":true,"landing_page_url":"https://hdl.handle.net/10630/39598","pdf_url":"https://riuma.uma.es/xmlui/bitstream/10630/39598/7/thurnhofer-hemsi-et-al-2025-representation-of-molecules-by-sequences-of-instructions-1.pdf","source":{"id":"https://openalex.org/S4306401385","display_name":"Repositorio Institucional de la Universidad de M\u00e1laga (University of M\u00e1laga)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I82767444","host_organization_name":"Universidad de M\u00e1laga","host_organization_lineage":["https://openalex.org/I82767444"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:europepmc.org:11156637","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12344769","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1021/acs.jcim.5c00354","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c00354","pdf_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.5c00354?ref=article_openPDF","source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.7599999904632568,"id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G2098693995","display_name":null,"funder_award_id":"B1-2021 20","funder_id":"https://openalex.org/F4320311265","funder_display_name":"Universidad de M\u00e1laga"},{"id":"https://openalex.org/G2576193556","display_name":null,"funder_award_id":"PID2022-136764OA-I00","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G3525189671","display_name":null,"funder_award_id":"B1-2022 14","funder_id":"https://openalex.org/F4320311265","funder_display_name":"Universidad de M\u00e1laga"},{"id":"https://openalex.org/G5066356496","display_name":null,"funder_award_id":"B1-2023 18","funder_id":"https://openalex.org/F4320311265","funder_display_name":"Universidad de M\u00e1laga"},{"id":"https://openalex.org/G6123974421","display_name":null,"funder_award_id":"B4-2023 13","funder_id":"https://openalex.org/F4320311265","funder_display_name":"Universidad de M\u00e1laga"},{"id":"https://openalex.org/G6343813651","display_name":null,"funder_award_id":"UMA20-FEDERJA-108","funder_id":"https://openalex.org/F4320326754","funder_display_name":"Junta de Andaluc\u00eda"}],"funders":[{"id":"https://openalex.org/F4320311265","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28"},{"id":"https://openalex.org/F4320315062","display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades","ror":null},{"id":"https://openalex.org/F4320326754","display_name":"Junta de Andaluc\u00eda","ror":"https://ror.org/01jem9c82"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4412727780.pdf","grobid_xml":"https://content.openalex.org/works/W4412727780.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1508604947","https://openalex.org/W1975147762","https://openalex.org/W1980090013","https://openalex.org/W2001496424","https://openalex.org/W2038702914","https://openalex.org/W2051810242","https://openalex.org/W2095596879","https://openalex.org/W2122709242","https://openalex.org/W2170973067","https://openalex.org/W2405035126","https://openalex.org/W2407633570","https://openalex.org/W2613900957","https://openalex.org/W2887459817","https://openalex.org/W2973074478","https://openalex.org/W2984933828","https://openalex.org/W3004704740","https://openalex.org/W3009321976","https://openalex.org/W3032963903","https://openalex.org/W3045928028","https://openalex.org/W3112554161","https://openalex.org/W3164906363","https://openalex.org/W3203480730","https://openalex.org/W4213070269","https://openalex.org/W4220791129","https://openalex.org/W4281786201","https://openalex.org/W4293199734","https://openalex.org/W4365800072","https://openalex.org/W4392470272","https://openalex.org/W4399528430","https://openalex.org/W4403691894"],"related_works":["https://openalex.org/W3044917232","https://openalex.org/W1498160656","https://openalex.org/W2119149496","https://openalex.org/W2055693471","https://openalex.org/W4295101776","https://openalex.org/W2139858675","https://openalex.org/W2952580779","https://openalex.org/W2007540612","https://openalex.org/W2054882906","https://openalex.org/W2807937018"],"abstract_inverted_index":{"The":[0,34],"processing":[1],"of":[2,12,16,53,88,94,111,115,129],"chemical":[3,75,113,168],"information":[4,169],"by":[5],"computational":[6,164],"intelligence":[7,165],"methods":[8],"faces":[9],"the":[10,13,39,51,57,86,101,109,112,152],"challenge":[11],"structural":[14],"complexity":[15],"molecular":[17],"graphs.":[18],"These":[19],"graphs":[20],"are":[21,92,121,132],"not":[22],"amenable":[23],"to":[24,74,103,117,124,148],"being":[25],"represented":[26,153],"in":[27,143,151,162],"a":[28,70,138,144],"suitable":[29],"way":[30],"for":[31,160,167],"such":[32,49,95],"methods.":[33],"most":[35],"popular":[36],"representation":[37],"is":[38,77,83,97,158],"SMILES":[40],"notation":[41],"standard.":[42],"However,":[43],"it":[44],"comes":[45],"with":[46],"some":[47],"limitations,":[48],"as":[50],"abundance":[52],"nonvalid":[54],"strings":[55,61,90,128],"and":[56,85,107],"fact":[58],"that":[59,91,126],"similar":[60],"often":[62],"represent":[63],"very":[64],"different":[65,72],"molecules.":[66],"In":[67],"this":[68,130,156],"work,":[69],"completely":[71],"approach":[73,157],"nomenclature":[76],"presented.":[78],"A":[79],"reduced":[80],"instruction":[81],"set":[82],"defined,":[84],"language":[87,131],"all":[89,127],"sequences":[93],"instructions":[96],"considered.":[98],"Instructions":[99,120],"provide":[100],"means":[102],"incrementally":[104],"add":[105],"atoms":[106,116],"modify":[108],"connectivity":[110],"bonds":[114],"be":[118],"inserted.":[119],"carefully":[122],"crafted":[123],"guarantee":[125],"valid,":[133],"i.e.,":[134],"each":[135],"string":[136,145],"represents":[137],"molecule.":[139,154],"Moreover,":[140],"slight":[141],"changes":[142],"usually":[146],"correspond":[147],"small":[149],"modifications":[150],"Therefore,":[155],"appropriate":[159],"use":[161],"state-of-the-art":[163],"systems":[166],"processing,":[170],"including":[171],"deep":[172],"learning":[173],"models.":[174]},"counts_by_year":[],"updated_date":"2026-06-15T08:34:33.830935","created_date":"2025-10-10T00:00:00"}
