{"id":"https://openalex.org/W4411089783","doi":"https://doi.org/10.1021/acs.jcim.5c00306","title":"AVP-HNCL: Innovative Contrastive Learning with a Queue-Based Negative Sampling Strategy for Dual-Phase Antiviral Peptide Prediction","display_name":"AVP-HNCL: Innovative Contrastive Learning with a Queue-Based Negative Sampling Strategy for Dual-Phase Antiviral Peptide Prediction","publication_year":2025,"publication_date":"2025-06-06","ids":{"openalex":"https://openalex.org/W4411089783","doi":"https://doi.org/10.1021/acs.jcim.5c00306","pmid":"https://pubmed.ncbi.nlm.nih.gov/40478240"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.5c00306","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c00306","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100631364","display_name":"Yuanhao Li","orcid":"https://orcid.org/0000-0002-9012-4503"},"institutions":[{"id":"https://openalex.org/I20942203","display_name":"Hainan University","ror":"https://ror.org/03q648j11","country_code":"CN","type":"education","lineage":["https://openalex.org/I20942203"]},{"id":"https://openalex.org/I4390039265","display_name":"PRG S&Tech (South Korea)","ror":"https://ror.org/02sr2ee22","country_code":null,"type":"company","lineage":["https://openalex.org/I4390039265"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuanhao Li","raw_affiliation_strings":["Hainan University","School of Computer Science and Technology"],"affiliations":[{"raw_affiliation_string":"Hainan University","institution_ids":["https://openalex.org/I20942203"]},{"raw_affiliation_string":"School of Computer Science and Technology","institution_ids":["https://openalex.org/I4390039265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114270411","display_name":"Aoyun Geng","orcid":"https://orcid.org/0009-0004-9716-9415"},"institutions":[{"id":"https://openalex.org/I20942203","display_name":"Hainan University","ror":"https://ror.org/03q648j11","country_code":"CN","type":"education","lineage":["https://openalex.org/I20942203"]},{"id":"https://openalex.org/I4390039265","display_name":"PRG S&Tech (South Korea)","ror":"https://ror.org/02sr2ee22","country_code":null,"type":"company","lineage":["https://openalex.org/I4390039265"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Aoyun Geng","raw_affiliation_strings":["Hainan University","School of Computer Science and Technology","School of Computer Science and Technology, Hainan University, Haikou 570228, China"],"affiliations":[{"raw_affiliation_string":"Hainan University","institution_ids":["https://openalex.org/I20942203"]},{"raw_affiliation_string":"School of Computer Science and Technology","institution_ids":["https://openalex.org/I4390039265"]},{"raw_affiliation_string":"School of Computer Science and Technology, Hainan University, Haikou 570228, China","institution_ids":["https://openalex.org/I20942203"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102684610","display_name":"Zheyu Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I20942203","display_name":"Hainan University","ror":"https://ror.org/03q648j11","country_code":"CN","type":"education","lineage":["https://openalex.org/I20942203"]},{"id":"https://openalex.org/I4390039265","display_name":"PRG S&Tech (South Korea)","ror":"https://ror.org/02sr2ee22","country_code":null,"type":"company","lineage":["https://openalex.org/I4390039265"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zheyu Zhou","raw_affiliation_strings":["Hainan University","School of Computer Science and Technology"],"affiliations":[{"raw_affiliation_string":"Hainan University","institution_ids":["https://openalex.org/I20942203"]},{"raw_affiliation_string":"School of Computer Science and Technology","institution_ids":["https://openalex.org/I4390039265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061028143","display_name":"Feifei Cui","orcid":"https://orcid.org/0000-0001-7055-3813"},"institutions":[{"id":"https://openalex.org/I20942203","display_name":"Hainan University","ror":"https://ror.org/03q648j11","country_code":"CN","type":"education","lineage":["https://openalex.org/I20942203"]},{"id":"https://openalex.org/I4390039265","display_name":"PRG S&Tech (South Korea)","ror":"https://ror.org/02sr2ee22","country_code":null,"type":"company","lineage":["https://openalex.org/I4390039265"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Feifei Cui","raw_affiliation_strings":["Hainan University","School of Computer Science and Technology"],"affiliations":[{"raw_affiliation_string":"Hainan University","institution_ids":["https://openalex.org/I20942203"]},{"raw_affiliation_string":"School of Computer Science and Technology","institution_ids":["https://openalex.org/I4390039265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066469263","display_name":"Junlin Xu","orcid":"https://orcid.org/0000-0003-1057-1504"},"institutions":[{"id":"https://openalex.org/I4390039265","display_name":"PRG S&Tech (South Korea)","ror":"https://ror.org/02sr2ee22","country_code":null,"type":"company","lineage":["https://openalex.org/I4390039265"]},{"id":"https://openalex.org/I43922553","display_name":"Wuhan University of Science and Technology","ror":"https://ror.org/00e4hrk88","country_code":"CN","type":"education","lineage":["https://openalex.org/I43922553"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junlin Xu","raw_affiliation_strings":["School of Computer Science and Technology","Wuhan University of Science and Technology"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology","institution_ids":["https://openalex.org/I4390039265"]},{"raw_affiliation_string":"Wuhan University of Science and Technology","institution_ids":["https://openalex.org/I43922553"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006543131","display_name":"Yajie Meng","orcid":"https://orcid.org/0000-0002-2384-1158"},"institutions":[{"id":"https://openalex.org/I4210119942","display_name":"Wuhan Textile University","ror":"https://ror.org/02jgsf398","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210119942"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yajie Meng","raw_affiliation_strings":["School of Computer Science and Artificial Intelligence","Wuhan Textile University"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Artificial Intelligence","institution_ids":[]},{"raw_affiliation_string":"Wuhan Textile University","institution_ids":["https://openalex.org/I4210119942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033232360","display_name":"Leyi Wei","orcid":"https://orcid.org/0000-0003-1444-190X"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]},{"id":"https://openalex.org/I4210121405","display_name":"Centre for Artificial Intelligence and Robotics","ror":"https://ror.org/01xnbq218","country_code":"IN","type":"facility","lineage":["https://openalex.org/I1340206300","https://openalex.org/I4210121405","https://openalex.org/I4210150591"]},{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["CN","IN","MO"],"is_corresponding":false,"raw_author_name":"Leyi Wei","raw_affiliation_strings":["Centre for Artificial Intelligence driven Drug Discovery, Faculty of Applied Science","Macao Polytechnic University","School of Informatics","Xiamen University","Centre for Artificial Intelligence driven Drug Discovery, Faculty of Applied Science, Macao Polytechnic University, Macao, SAR, China"],"affiliations":[{"raw_affiliation_string":"Centre for Artificial Intelligence driven Drug Discovery, Faculty of Applied Science","institution_ids":["https://openalex.org/I4210121405"]},{"raw_affiliation_string":"Macao Polytechnic University","institution_ids":["https://openalex.org/I49835588"]},{"raw_affiliation_string":"School of Informatics","institution_ids":[]},{"raw_affiliation_string":"Xiamen University","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"Centre for Artificial Intelligence driven Drug Discovery, Faculty of Applied Science, Macao Polytechnic University, Macao, SAR, China","institution_ids":["https://openalex.org/I49835588"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017426085","display_name":"Quan Zou","orcid":"https://orcid.org/0000-0001-6406-1142"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]},{"id":"https://openalex.org/I4210105136","display_name":"Yangtze River Delta Physics Research Center (China)","ror":"https://ror.org/01g53qc72","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210105136"]},{"id":"https://openalex.org/I4210123686","display_name":"Quzhou University","ror":"https://ror.org/024nfx323","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210123686"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Quan Zou","raw_affiliation_strings":["Institute of Fundamental and Frontier Sciences","University of Electronic Science and Technology of China","Yangtze Delta Region Institute (Quzhou)","Yangtze Delta Region Institute (Quzhou), University of Electronic Science and Technology of China, Quzhou 324000, China"],"affiliations":[{"raw_affiliation_string":"Institute of Fundamental and Frontier Sciences","institution_ids":[]},{"raw_affiliation_string":"University of Electronic Science and Technology of China","institution_ids":["https://openalex.org/I150229711"]},{"raw_affiliation_string":"Yangtze Delta Region Institute (Quzhou)","institution_ids":["https://openalex.org/I4210105136"]},{"raw_affiliation_string":"Yangtze Delta Region Institute (Quzhou), University of Electronic Science and Technology of China, Quzhou 324000, China","institution_ids":["https://openalex.org/I4210123686","https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101829682","display_name":"Qingchen Zhang","orcid":"https://orcid.org/0000-0001-5525-687X"},"institutions":[{"id":"https://openalex.org/I20942203","display_name":"Hainan University","ror":"https://ror.org/03q648j11","country_code":"CN","type":"education","lineage":["https://openalex.org/I20942203"]},{"id":"https://openalex.org/I4390039265","display_name":"PRG S&Tech (South Korea)","ror":"https://ror.org/02sr2ee22","country_code":null,"type":"company","lineage":["https://openalex.org/I4390039265"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qingchen Zhang","raw_affiliation_strings":["Hainan University","School of Computer Science and Technology"],"affiliations":[{"raw_affiliation_string":"Hainan University","institution_ids":["https://openalex.org/I20942203"]},{"raw_affiliation_string":"School of Computer Science and Technology","institution_ids":["https://openalex.org/I4390039265"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100353028","display_name":"Zilong Zhang","orcid":"https://orcid.org/0000-0002-4934-1258"},"institutions":[{"id":"https://openalex.org/I20942203","display_name":"Hainan University","ror":"https://ror.org/03q648j11","country_code":"CN","type":"education","lineage":["https://openalex.org/I20942203"]},{"id":"https://openalex.org/I4390039265","display_name":"PRG S&Tech (South Korea)","ror":"https://ror.org/02sr2ee22","country_code":null,"type":"company","lineage":["https://openalex.org/I4390039265"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zilong Zhang","raw_affiliation_strings":["Hainan University","School of Computer Science and Technology"],"affiliations":[{"raw_affiliation_string":"Hainan University","institution_ids":["https://openalex.org/I20942203"]},{"raw_affiliation_string":"School of Computer Science and Technology","institution_ids":["https://openalex.org/I4390039265"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5100353028"],"corresponding_institution_ids":["https://openalex.org/I20942203","https://openalex.org/I4390039265"],"apc_list":null,"apc_paid":null,"fwci":4.0747,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.93902038,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"65","issue":"12","first_page":"5868","last_page":"5886"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dual","display_name":"Dual (grammatical number)","score":0.723397970199585},{"id":"https://openalex.org/keywords/queue","display_name":"Queue","score":0.6633186340332031},{"id":"https://openalex.org/keywords/sampling","display_name":"Sampling (signal processing)","score":0.5182204842567444},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4793599247932434},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.4387962222099304},{"id":"https://openalex.org/keywords/phase","display_name":"Phase (matter)","score":0.4232426881790161},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42117491364479065},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.32757019996643066},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2788139581680298},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.15435820817947388},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.10104307532310486},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.09232106804847717}],"concepts":[{"id":"https://openalex.org/C2780980858","wikidata":"https://www.wikidata.org/wiki/Q110022","display_name":"Dual (grammatical number)","level":2,"score":0.723397970199585},{"id":"https://openalex.org/C160403385","wikidata":"https://www.wikidata.org/wiki/Q220543","display_name":"Queue","level":2,"score":0.6633186340332031},{"id":"https://openalex.org/C140779682","wikidata":"https://www.wikidata.org/wiki/Q210868","display_name":"Sampling (signal processing)","level":3,"score":0.5182204842567444},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4793599247932434},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.4387962222099304},{"id":"https://openalex.org/C44280652","wikidata":"https://www.wikidata.org/wiki/Q104837","display_name":"Phase (matter)","level":2,"score":0.4232426881790161},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42117491364479065},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.32757019996643066},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2788139581680298},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.15435820817947388},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.10104307532310486},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.09232106804847717},{"id":"https://openalex.org/C94915269","wikidata":"https://www.wikidata.org/wiki/Q1834857","display_name":"Detector","level":2,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C124952713","wikidata":"https://www.wikidata.org/wiki/Q8242","display_name":"Literature","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.5c00306","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c00306","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:40478240","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40478240","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G771689064","display_name":null,"funder_award_id":"62450002","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":65,"referenced_works":["https://openalex.org/W85350352","https://openalex.org/W1542320852","https://openalex.org/W1983990793","https://openalex.org/W2011696026","https://openalex.org/W2024213882","https://openalex.org/W2054068479","https://openalex.org/W2072700935","https://openalex.org/W2094403468","https://openalex.org/W2097834518","https://openalex.org/W2118978333","https://openalex.org/W2131275757","https://openalex.org/W2132581719","https://openalex.org/W2156125289","https://openalex.org/W2255466643","https://openalex.org/W2482526777","https://openalex.org/W2588467130","https://openalex.org/W2623065429","https://openalex.org/W2739999456","https://openalex.org/W2798016132","https://openalex.org/W2889326414","https://openalex.org/W2917603237","https://openalex.org/W2947612926","https://openalex.org/W2965128681","https://openalex.org/W2972006361","https://openalex.org/W2972223935","https://openalex.org/W2987724682","https://openalex.org/W3007215678","https://openalex.org/W3026181439","https://openalex.org/W3097405028","https://openalex.org/W3126232929","https://openalex.org/W3128228480","https://openalex.org/W3160604206","https://openalex.org/W3168997536","https://openalex.org/W3202160788","https://openalex.org/W3216979156","https://openalex.org/W4225460848","https://openalex.org/W4230918047","https://openalex.org/W4282962464","https://openalex.org/W4298325713","https://openalex.org/W4310059354","https://openalex.org/W4312113926","https://openalex.org/W4312827846","https://openalex.org/W4320492449","https://openalex.org/W4327550249","https://openalex.org/W4366089579","https://openalex.org/W4367849650","https://openalex.org/W4381429239","https://openalex.org/W4385997203","https://openalex.org/W4389378102","https://openalex.org/W4393321945","https://openalex.org/W4396572253","https://openalex.org/W4396663720","https://openalex.org/W4396707011","https://openalex.org/W4396814356","https://openalex.org/W4399421402","https://openalex.org/W4400932307","https://openalex.org/W4401171136","https://openalex.org/W4402882422","https://openalex.org/W4403327554","https://openalex.org/W4403381224","https://openalex.org/W4403480073","https://openalex.org/W4403782367","https://openalex.org/W4403782504","https://openalex.org/W4407740651","https://openalex.org/W4408734507"],"related_works":["https://openalex.org/W1526195401","https://openalex.org/W2317351040","https://openalex.org/W4313385292","https://openalex.org/W1759461029","https://openalex.org/W2952466936","https://openalex.org/W1988622314","https://openalex.org/W2393949104","https://openalex.org/W2126989399","https://openalex.org/W4236344264","https://openalex.org/W3046201198"],"abstract_inverted_index":{"Viral":[0],"infections":[1],"have":[2,228],"long":[3],"been":[4],"a":[5,29,116,172,230],"core":[6],"focus":[7],"in":[8,37,72,130],"the":[9,93,123,127,164,181,184,199,202,206],"field":[10],"of":[11,22,32,109,169,178,194,209],"public":[12],"health.":[13],"Antiviral":[14],"peptides":[15,211],"(AVPs),":[16],"due":[17],"to":[18,60],"their":[19,112],"unique":[20],"mechanisms":[21],"action":[23],"and":[24,62,76,100,111,134,137,147,171,190,217],"significant":[25],"inhibitory":[26],"effects":[27],"against":[28,212],"wide":[30],"range":[31],"viruses,":[33],"exhibit":[34],"tremendous":[35],"potential":[36],"protecting":[38],"organisms":[39],"from":[40],"various":[41],"viral":[42],"diseases.":[43],"However,":[44],"existing":[45],"studies":[46],"on":[47,53,153,161],"antiviral":[48,154,207,210],"peptide":[49],"recognition":[50],"often":[51],"rely":[52],"feature":[54,73,98],"selection.":[55],"As":[56],"data":[57,96],"volume":[58],"continues":[59],"grow":[61],"task":[63],"complexity":[64],"increases,":[65],"traditional":[66],"methods":[67],"are":[68],"increasingly":[69],"showing":[70],"limitations":[71],"extraction":[74],"capabilities":[75],"model":[77,185,203],"generalization":[78,139],"performance.":[79,140],"To":[80,221],"tackle":[81],"these":[82],"challenges,":[83],"we":[84,227],"propose":[85],"an":[86,167,191],"innovative":[87],"two-stage":[88],"predictive":[89],"framework":[90,105,124,165],"that":[91,160],"integrates":[92],"ESM2":[94],"model,":[95],"augmentation,":[97],"fusion,":[99],"contrastive":[101,120],"learning":[102,121],"techniques.":[103],"This":[104,141],"enables":[106],"simultaneous":[107],"identification":[108],"AVPs":[110],"subclasses.":[113],"By":[114],"introducing":[115],"novel":[117],"top-k":[118],"queue-based":[119],"strategy,":[122],"significantly":[125],"improves":[126],"model's":[128],"accuracy":[129,168,188],"distinguishing":[131],"challenging":[132],"positive":[133],"negative":[135],"samples":[136],"its":[138],"approach":[142],"provides":[143],"robust":[144],"theoretical":[145],"support":[146],"technical":[148],"tools":[149],"for":[150,225],"advancing":[151],"research":[152],"peptides.":[155],"Model":[156],"evaluation":[157],"results":[158],"show":[159],"Set":[162,182],"1-nonAVP,":[163],"achieves":[166,186],"0.9362":[170],"Matthews":[173],"correlation":[174],"coefficient":[175],"(MCC)":[176],"score":[177,193],"0.8730.":[179],"On":[180],"2-nonAMP,":[183],"perfect":[187],"(1.0000)":[189],"MCC":[192],"1.0000.":[195],"In":[196],"addition,":[197],"during":[198],"second":[200],"stage,":[201],"accurately":[204],"predicts":[205],"activity":[208],"six":[213],"major":[214],"virus":[215],"families":[216],"eight":[218],"specific":[219],"viruses.":[220],"further":[222],"enhance":[223],"accessibility":[224],"users,":[226],"developed":[229],"user-friendly":[231],"web":[232],"interface,":[233],"available":[234],"at":[235],"http://www.bioai-lab.com/AVP-HNCL.":[236]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3}],"updated_date":"2026-03-27T14:29:43.386196","created_date":"2025-10-10T00:00:00"}
