{"id":"https://openalex.org/W4408304611","doi":"https://doi.org/10.1021/acs.jcim.5c00043","title":"MOLGAECL: Molecular Graph Contrastive Learning via Graph Auto-Encoder Pretraining and Fine-Tuning Based on Drug\u2013Drug Interaction Prediction","display_name":"MOLGAECL: Molecular Graph Contrastive Learning via Graph Auto-Encoder Pretraining and Fine-Tuning Based on Drug\u2013Drug Interaction Prediction","publication_year":2025,"publication_date":"2025-03-11","ids":{"openalex":"https://openalex.org/W4408304611","doi":"https://doi.org/10.1021/acs.jcim.5c00043","pmid":"https://pubmed.ncbi.nlm.nih.gov/40067127"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.5c00043","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c00043","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102790736","display_name":"Yu Li","orcid":"https://orcid.org/0009-0008-8675-1396"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I4210153482","display_name":"Changzhou University","ror":"https://ror.org/04ymgwq66","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210153482"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yu Li","raw_affiliation_strings":["Changzhou University","Northwestern Polytechnical University","School of Computer Science","School of Computer Science and Artificial Intelligence","School of Computer Science, Northwestern Polytechnical University, Xi'an 710129, China","School of Computer Science and Artificial Intelligence, Changzhou University, Changzhou 213164, China"],"affiliations":[{"raw_affiliation_string":"Changzhou University","institution_ids":["https://openalex.org/I4210153482"]},{"raw_affiliation_string":"Northwestern Polytechnical University","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science and Artificial Intelligence","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi'an 710129, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science and Artificial Intelligence, Changzhou University, Changzhou 213164, China","institution_ids":["https://openalex.org/I4210153482"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056699322","display_name":"Lin-Xuan Hou","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I4210153482","display_name":"Changzhou University","ror":"https://ror.org/04ymgwq66","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210153482"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lin-Xuan Hou","raw_affiliation_strings":["Changzhou University","Northwestern Polytechnical University","School of Computer Science","School of Computer Science and Artificial Intelligence","School of Computer Science, Northwestern Polytechnical University, Xi'an 710129, China","School of Computer Science and Artificial Intelligence, Changzhou University, Changzhou 213164, China"],"affiliations":[{"raw_affiliation_string":"Changzhou University","institution_ids":["https://openalex.org/I4210153482"]},{"raw_affiliation_string":"Northwestern Polytechnical University","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science and Artificial Intelligence","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi'an 710129, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science and Artificial Intelligence, Changzhou University, Changzhou 213164, China","institution_ids":["https://openalex.org/I4210153482"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102010573","display_name":"Hai-Cheng Yi","orcid":"https://orcid.org/0000-0001-8339-396X"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I4210153482","display_name":"Changzhou University","ror":"https://ror.org/04ymgwq66","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210153482"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hai-Cheng Yi","raw_affiliation_strings":["Changzhou University","Northwestern Polytechnical University","School of Computer Science","School of Computer Science and Artificial Intelligence","School of Computer Science, Northwestern Polytechnical University, Xi'an 710129, China","School of Computer Science and Artificial Intelligence, Changzhou University, Changzhou 213164, China"],"affiliations":[{"raw_affiliation_string":"Changzhou University","institution_ids":["https://openalex.org/I4210153482"]},{"raw_affiliation_string":"Northwestern Polytechnical University","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science and Artificial Intelligence","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi'an 710129, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science and Artificial Intelligence, Changzhou University, Changzhou 213164, China","institution_ids":["https://openalex.org/I4210153482"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101527931","display_name":"Zhu\u2010Hong You","orcid":"https://orcid.org/0000-0002-7373-7922"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I4210153482","display_name":"Changzhou University","ror":"https://ror.org/04ymgwq66","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210153482"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhu-Hong You","raw_affiliation_strings":["Changzhou University","Northwestern Polytechnical University","School of Computer Science","School of Computer Science and Artificial Intelligence","School of Computer Science, Northwestern Polytechnical University, Xi'an 710129, China","School of Computer Science and Artificial Intelligence, Changzhou University, Changzhou 213164, China"],"affiliations":[{"raw_affiliation_string":"Changzhou University","institution_ids":["https://openalex.org/I4210153482"]},{"raw_affiliation_string":"Northwestern Polytechnical University","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science and Artificial Intelligence","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi'an 710129, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science and Artificial Intelligence, Changzhou University, Changzhou 213164, China","institution_ids":["https://openalex.org/I4210153482"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100731246","display_name":"Shihong Chen","orcid":"https://orcid.org/0009-0008-4035-0909"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I4210153482","display_name":"Changzhou University","ror":"https://ror.org/04ymgwq66","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210153482"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shi-Hong Chen","raw_affiliation_strings":["Changzhou University","Northwestern Polytechnical University","School of Computer Science","School of Computer Science and Artificial Intelligence","School of Computer Science and Artificial Intelligence, Changzhou University, Changzhou 213164, China","School of Computer Science, Northwestern Polytechnical University, Xi'an 710129, China"],"affiliations":[{"raw_affiliation_string":"Changzhou University","institution_ids":["https://openalex.org/I4210153482"]},{"raw_affiliation_string":"Northwestern Polytechnical University","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science and Artificial Intelligence","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science and Artificial Intelligence, Changzhou University, Changzhou 213164, China","institution_ids":["https://openalex.org/I4210153482"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi'an 710129, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010594849","display_name":"Zheng Jia","orcid":"https://orcid.org/0000-0001-8459-515X"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I4210153482","display_name":"Changzhou University","ror":"https://ror.org/04ymgwq66","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210153482"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jia Zheng","raw_affiliation_strings":["Changzhou University","Northwestern Polytechnical University","School of Computer Science","School of Computer Science and Artificial Intelligence","School of Computer Science and Artificial Intelligence, Changzhou University, Changzhou 213164, China","School of Computer Science, Northwestern Polytechnical University, Xi'an 710129, China"],"affiliations":[{"raw_affiliation_string":"Changzhou University","institution_ids":["https://openalex.org/I4210153482"]},{"raw_affiliation_string":"Northwestern Polytechnical University","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science and Artificial Intelligence","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science and Artificial Intelligence, Changzhou University, Changzhou 213164, China","institution_ids":["https://openalex.org/I4210153482"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi'an 710129, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100713634","display_name":"Yuan Yang","orcid":"https://orcid.org/0000-0002-4417-5553"},"institutions":[{"id":"https://openalex.org/I4210153482","display_name":"Changzhou University","ror":"https://ror.org/04ymgwq66","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210153482"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Yuan","raw_affiliation_strings":["Changzhou University","School of Computer Science and Artificial Intelligence","School of Computer Science and Artificial Intelligence, Changzhou University, Changzhou 213164, China"],"affiliations":[{"raw_affiliation_string":"Changzhou University","institution_ids":["https://openalex.org/I4210153482"]},{"raw_affiliation_string":"School of Computer Science and Artificial Intelligence","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science and Artificial Intelligence, Changzhou University, Changzhou 213164, China","institution_ids":["https://openalex.org/I4210153482"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037446151","display_name":"Chenggang Mi","orcid":"https://orcid.org/0000-0002-6903-8774"},"institutions":[{"id":"https://openalex.org/I180632629","display_name":"Xi'an International Studies University","ror":"https://ror.org/05gcme754","country_code":"CN","type":"education","lineage":["https://openalex.org/I180632629"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Cheng-Gang Mi","raw_affiliation_strings":["Foreign Language and Literature Institute","Xi\u2019an International Studies University","Foreign Language and Literature Institute, Xi'an International Studies University, Xi'an 710129, China"],"affiliations":[{"raw_affiliation_string":"Foreign Language and Literature Institute","institution_ids":[]},{"raw_affiliation_string":"Xi\u2019an International Studies University","institution_ids":["https://openalex.org/I180632629"]},{"raw_affiliation_string":"Foreign Language and Literature Institute, Xi'an International Studies University, Xi'an 710129, China","institution_ids":["https://openalex.org/I180632629"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5101527931","https://openalex.org/A5102790736"],"corresponding_institution_ids":["https://openalex.org/I17145004","https://openalex.org/I4210153482"],"apc_list":null,"apc_paid":null,"fwci":5.5582,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.95414179,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"65","issue":"6","first_page":"3104","last_page":"3116"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.6674787998199463},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.646544337272644},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6342707872390747},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5005714893341064},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.4990706443786621},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4051363468170166},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.33487486839294434},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.21474769711494446},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.1091032326221466},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.08019757270812988}],"concepts":[{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.6674787998199463},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.646544337272644},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6342707872390747},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5005714893341064},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.4990706443786621},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4051363468170166},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.33487486839294434},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.21474769711494446},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.1091032326221466},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.08019757270812988},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.5c00043","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c00043","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:40067127","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40067127","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.550000011920929,"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2"}],"awards":[{"id":"https://openalex.org/G3639475604","display_name":null,"funder_award_id":"62325308","funder_id":"https://openalex.org/F4320336125","funder_display_name":"National Science Fund for Distinguished Young Scholars"}],"funders":[{"id":"https://openalex.org/F4320336125","display_name":"National Science Fund for Distinguished Young Scholars","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":55,"referenced_works":["https://openalex.org/W1018047830","https://openalex.org/W1583837637","https://openalex.org/W1888005072","https://openalex.org/W2013181441","https://openalex.org/W2014304044","https://openalex.org/W2091439417","https://openalex.org/W2106417713","https://openalex.org/W2154851992","https://openalex.org/W2469049024","https://openalex.org/W2559655401","https://openalex.org/W2570516417","https://openalex.org/W2608081584","https://openalex.org/W2767891136","https://openalex.org/W2786016794","https://openalex.org/W2798133167","https://openalex.org/W2799720196","https://openalex.org/W2802200505","https://openalex.org/W2899070097","https://openalex.org/W2900758217","https://openalex.org/W2913015533","https://openalex.org/W2940601839","https://openalex.org/W2962711740","https://openalex.org/W2965993245","https://openalex.org/W2972392269","https://openalex.org/W2997021962","https://openalex.org/W3005552578","https://openalex.org/W3013557219","https://openalex.org/W3024894285","https://openalex.org/W3094497296","https://openalex.org/W3104097132","https://openalex.org/W3108458441","https://openalex.org/W3115722135","https://openalex.org/W3139253280","https://openalex.org/W3156650687","https://openalex.org/W3157889929","https://openalex.org/W3205082786","https://openalex.org/W3208102118","https://openalex.org/W4214932602","https://openalex.org/W4224322651","https://openalex.org/W4224946912","https://openalex.org/W4281850946","https://openalex.org/W4285165731","https://openalex.org/W4286373989","https://openalex.org/W4290876361","https://openalex.org/W4294908374","https://openalex.org/W4297733535","https://openalex.org/W4297808394","https://openalex.org/W4306317062","https://openalex.org/W4313405519","https://openalex.org/W4321194906","https://openalex.org/W4321479940","https://openalex.org/W4327525152","https://openalex.org/W4367047461","https://openalex.org/W4384644538","https://openalex.org/W4388895091"],"related_works":["https://openalex.org/W4390516098","https://openalex.org/W2181948922","https://openalex.org/W2384362569","https://openalex.org/W2142795561","https://openalex.org/W4205302943","https://openalex.org/W2561132942","https://openalex.org/W3155418658","https://openalex.org/W4243199227","https://openalex.org/W2379948177","https://openalex.org/W2119949815"],"abstract_inverted_index":{"Drug-drug":[0],"interactions":[1],"influence":[2],"drug":[3,94],"efficacy":[4],"and":[5,47,112,140],"patient":[6],"prognosis,":[7],"providing":[8],"substantial":[9],"research":[10],"value.":[11],"Some":[12],"existing":[13],"methods":[14],"struggle":[15],"with":[16,106],"the":[17,25,77,91,100,122],"challenges":[18],"posed":[19],"by":[20],"sparse":[21],"networks":[22],"or":[23],"lack":[24],"capability":[26],"to":[27,89],"integrate":[28],"data":[29,87,146],"from":[30],"multiple":[31],"sources.":[32],"In":[33],"this":[34],"study,":[35],"we":[36],"propose":[37],"MOLGAECL,":[38,103],"a":[39,53,63,80],"novel":[40],"approach":[41],"based":[42],"on":[43,85],"graph":[44,49,64,67],"autoencoder":[45],"pretraining":[46],"molecular":[48,58],"contrastive":[50,68],"learning.":[51],"Initially,":[52],"large":[54],"number":[55],"of":[56,76,102,125,133],"unlabeled":[57],"graphs":[59],"are":[60,116],"pretrained":[61],"using":[62],"autoencoder,":[65],"where":[66],"learning":[69],"is":[70,83],"applied":[71],"for":[72,93],"more":[73],"accurate":[74],"representation":[75],"drugs.":[78],"Subsequently,":[79],"full-parameter":[81],"fine-tuning":[82,109],"performed":[84],"different":[86],"sets":[88],"adapt":[90],"model":[92],"interaction-related":[95],"prediction":[96],"tasks.":[97],"To":[98],"assess":[99],"effectiveness":[101],"comparison":[104,110],"experiments":[105],"state-of-the-art":[107],"methods,":[108],"experiments,":[111],"parameter":[113],"sensitivity":[114],"analysis":[115],"conducted.":[117],"Extensive":[118],"experimental":[119],"results":[120],"demonstrate":[121],"superior":[123],"performance":[124],"MOLGAECL.":[126],"Specifically,":[127],"MOLGAECL":[128],"achieves":[129],"an":[130],"average":[131],"increase":[132],"6.13%":[134],"in":[135,138,142],"accuracy,":[136],"6.14%":[137],"AUROC,":[139],"8.16%":[141],"AUPRC":[143],"across":[144],"all":[145],"sets.":[147]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
