{"id":"https://openalex.org/W4406440671","doi":"https://doi.org/10.1021/acs.jcim.4c02130","title":"MOCapsNet: Multiomics Data Integration for Cancer Subtype Analysis Based on Dynamic Self-Attention Learning and Capsule Networks","display_name":"MOCapsNet: Multiomics Data Integration for Cancer Subtype Analysis Based on Dynamic Self-Attention Learning and Capsule Networks","publication_year":2025,"publication_date":"2025-01-16","ids":{"openalex":"https://openalex.org/W4406440671","doi":"https://doi.org/10.1021/acs.jcim.4c02130","pmid":"https://pubmed.ncbi.nlm.nih.gov/39818771"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.4c02130","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c02130","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100746477","display_name":"Yuanyuan Zhang","orcid":"https://orcid.org/0000-0003-3935-3201"},"institutions":[{"id":"https://openalex.org/I44468530","display_name":"Qingdao University of Technology","ror":"https://ror.org/01qzc0f54","country_code":"CN","type":"education","lineage":["https://openalex.org/I44468530"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuanyuan Zhang","raw_affiliation_strings":["Qingdao University of Technology","School of Information and Control Engineering","School of Information and Control Engineering, Qingdao University of Technology, Qingdao 266520, Shandong, China"],"affiliations":[{"raw_affiliation_string":"Qingdao University of Technology","institution_ids":["https://openalex.org/I44468530"]},{"raw_affiliation_string":"School of Information and Control Engineering","institution_ids":[]},{"raw_affiliation_string":"School of Information and Control Engineering, Qingdao University of Technology, Qingdao 266520, Shandong, China","institution_ids":["https://openalex.org/I44468530"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020982437","display_name":"Haoyu Zheng","orcid":null},"institutions":[{"id":"https://openalex.org/I44468530","display_name":"Qingdao University of Technology","ror":"https://ror.org/01qzc0f54","country_code":"CN","type":"education","lineage":["https://openalex.org/I44468530"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Haoyu Zheng","raw_affiliation_strings":["Qingdao University of Technology","School of Information and Control Engineering","School of Information and Control Engineering, Qingdao University of Technology, Qingdao 266520, Shandong, China"],"affiliations":[{"raw_affiliation_string":"Qingdao University of Technology","institution_ids":["https://openalex.org/I44468530"]},{"raw_affiliation_string":"School of Information and Control Engineering","institution_ids":[]},{"raw_affiliation_string":"School of Information and Control Engineering, Qingdao University of Technology, Qingdao 266520, Shandong, China","institution_ids":["https://openalex.org/I44468530"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000291307","display_name":"Xiaokun Meng","orcid":null},"institutions":[{"id":"https://openalex.org/I44468530","display_name":"Qingdao University of Technology","ror":"https://ror.org/01qzc0f54","country_code":"CN","type":"education","lineage":["https://openalex.org/I44468530"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaokun Meng","raw_affiliation_strings":["Qingdao University of Technology","School of Information and Control Engineering","School of Information and Control Engineering, Qingdao University of Technology, Qingdao 266520, Shandong, China"],"affiliations":[{"raw_affiliation_string":"Qingdao University of Technology","institution_ids":["https://openalex.org/I44468530"]},{"raw_affiliation_string":"School of Information and Control Engineering","institution_ids":[]},{"raw_affiliation_string":"School of Information and Control Engineering, Qingdao University of Technology, Qingdao 266520, Shandong, China","institution_ids":["https://openalex.org/I44468530"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079514446","display_name":"Qihao Wang","orcid":"https://orcid.org/0000-0001-6701-0770"},"institutions":[{"id":"https://openalex.org/I44468530","display_name":"Qingdao University of Technology","ror":"https://ror.org/01qzc0f54","country_code":"CN","type":"education","lineage":["https://openalex.org/I44468530"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qihao Wang","raw_affiliation_strings":["Qingdao University of Technology","School of Information and Control Engineering","School of Information and Control Engineering, Qingdao University of Technology, Qingdao 266520, Shandong, China"],"affiliations":[{"raw_affiliation_string":"Qingdao University of Technology","institution_ids":["https://openalex.org/I44468530"]},{"raw_affiliation_string":"School of Information and Control Engineering","institution_ids":[]},{"raw_affiliation_string":"School of Information and Control Engineering, Qingdao University of Technology, Qingdao 266520, Shandong, China","institution_ids":["https://openalex.org/I44468530"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109745734","display_name":"Z. Li","orcid":"https://orcid.org/0000-0003-4709-4588"},"institutions":[{"id":"https://openalex.org/I44468530","display_name":"Qingdao University of Technology","ror":"https://ror.org/01qzc0f54","country_code":"CN","type":"education","lineage":["https://openalex.org/I44468530"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zimin Li","raw_affiliation_strings":["Qingdao University of Technology","School of Information and Control Engineering","School of Information and Control Engineering, Qingdao University of Technology, Qingdao 266520, Shandong, China"],"affiliations":[{"raw_affiliation_string":"Qingdao University of Technology","institution_ids":["https://openalex.org/I44468530"]},{"raw_affiliation_string":"School of Information and Control Engineering","institution_ids":[]},{"raw_affiliation_string":"School of Information and Control Engineering, Qingdao University of Technology, Qingdao 266520, Shandong, China","institution_ids":["https://openalex.org/I44468530"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103053829","display_name":"Wenhao Wu","orcid":"https://orcid.org/0000-0002-9485-1249"},"institutions":[{"id":"https://openalex.org/I204553293","display_name":"China University of Petroleum, Beijing","ror":"https://ror.org/041qf4r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I204553293"]},{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]},{"id":"https://openalex.org/I4390039265","display_name":"PRG S&Tech (South Korea)","ror":"https://ror.org/02sr2ee22","country_code":null,"type":"company","lineage":["https://openalex.org/I4390039265"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenhao Wu","raw_affiliation_strings":["China University of Petroleum","School of Computer Science and Technology","School of Computer Science and Technology, China University of Petroleum, Qingdao 266580, Shandong, China"],"affiliations":[{"raw_affiliation_string":"China University of Petroleum","institution_ids":["https://openalex.org/I204553293"]},{"raw_affiliation_string":"School of Computer Science and Technology","institution_ids":["https://openalex.org/I4390039265"]},{"raw_affiliation_string":"School of Computer Science and Technology, China University of Petroleum, Qingdao 266580, Shandong, China","institution_ids":["https://openalex.org/I4210162190"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5020982437"],"corresponding_institution_ids":["https://openalex.org/I44468530"],"apc_list":null,"apc_paid":null,"fwci":4.5896,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.93341715,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"65","issue":"3","first_page":"1653","last_page":"1665"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.5611906051635742},{"id":"https://openalex.org/keywords/capsule","display_name":"Capsule","score":0.521787166595459},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5123409032821655},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.38854891061782837},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3365035057067871},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3212828040122986},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.20383423566818237}],"concepts":[{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.5611906051635742},{"id":"https://openalex.org/C2778778583","wikidata":"https://www.wikidata.org/wiki/Q147768","display_name":"Capsule","level":2,"score":0.521787166595459},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5123409032821655},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.38854891061782837},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3365035057067871},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3212828040122986},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.20383423566818237},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.4c02130","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c02130","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:39818771","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39818771","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5006056173","display_name":null,"funder_award_id":"ZR2023MF053","funder_id":"https://openalex.org/F4320324174","funder_display_name":"Natural Science Foundation of Shandong Province"},{"id":"https://openalex.org/G7963961118","display_name":null,"funder_award_id":"No.61902430","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320324174","display_name":"Natural Science Foundation of Shandong Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W1504194272","https://openalex.org/W1881929920","https://openalex.org/W1930624869","https://openalex.org/W2044074081","https://openalex.org/W2097255042","https://openalex.org/W2218734540","https://openalex.org/W2295598076","https://openalex.org/W2612690371","https://openalex.org/W2909472027","https://openalex.org/W2912393903","https://openalex.org/W2947761852","https://openalex.org/W2951209146","https://openalex.org/W2968912020","https://openalex.org/W2977233715","https://openalex.org/W2982991669","https://openalex.org/W2988415853","https://openalex.org/W2990138404","https://openalex.org/W2993519305","https://openalex.org/W3048417086","https://openalex.org/W3087987460","https://openalex.org/W3093077366","https://openalex.org/W3130672622","https://openalex.org/W3170986249","https://openalex.org/W3196589301","https://openalex.org/W3214127792","https://openalex.org/W4210546025","https://openalex.org/W4224250315","https://openalex.org/W4224926219","https://openalex.org/W4239510810","https://openalex.org/W4252208101","https://openalex.org/W4312946813","https://openalex.org/W4320486075","https://openalex.org/W4382318546","https://openalex.org/W4385491154","https://openalex.org/W4387675955","https://openalex.org/W4393392390","https://openalex.org/W4395954533","https://openalex.org/W4399768250","https://openalex.org/W4405516441"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W4391375266","https://openalex.org/W3031052312","https://openalex.org/W4389568370","https://openalex.org/W3032375762","https://openalex.org/W1995515455","https://openalex.org/W2080531066","https://openalex.org/W3108674512","https://openalex.org/W1506200166"],"abstract_inverted_index":{"<i>Background":[0],"and":[1,49,93,98,105,129,148,195],"Objective</i>:":[2],"With":[3],"the":[4,8,40,67,77,133,142,153,166,173,190,204,234,241],"rapid":[5],"development":[6],"of":[7,10,35,42,46,156,201,236],"accumulation":[9],"large-scale":[11],"multiomics":[12,43,82,116,226],"data":[13,18,117,193,206,218],"sets,":[14,219],"integrating":[15,225],"various":[16,157],"omics":[17,71,217],"to":[19,39,74,109,140,149,152],"provide":[20,29],"a":[21],"thorough":[22],"study":[23],"from":[24],"multiple":[25],"perspectives":[26],"can":[27],"significantly":[28],"stronger":[30],"support":[31],"for":[32,96,120,172],"precise":[33],"treatment":[34],"diseases.":[36],"However,":[37],"due":[38],"complexity":[41],"data,":[44,72],"issues":[45],"feature":[47,103,143,242],"redundancy":[48],"noise":[50],"often":[51,88],"do":[52],"not":[53],"receive":[54],"sufficient":[55],"attention":[56],"when":[57],"processing":[58],"high-dimensional":[59],"data.":[60,83,227],"Moreover,":[61],"simple":[62],"concatenation":[63],"strategies":[64],"may":[65],"overlook":[66],"correlations":[68],"between":[69],"different":[70],"failing":[73],"effectively":[75],"capture":[76],"unique":[78],"information":[79,144],"inherent":[80],"in":[81,160,224],"Meanwhile,":[84],"deep":[85],"neural":[86],"networks":[87],"rely":[89],"on":[90,127,184,189,203,216],"complex":[91],"structures":[92],"numerous":[94],"parameters":[95],"training":[97],"inference,":[99],"making":[100],"their":[101],"internal":[102],"representations":[104,155],"decision-making":[106],"processes":[107],"difficult":[108],"interpret.":[110],"<i>Methods</i>:":[111],"We":[112],"propose":[113],"an":[114,199],"interpretable":[115],"integration":[118],"method":[119],"cancer":[121,175],"subtype":[122],"classification,":[123],"named":[124],"MOCapsNet,":[125],"based":[126],"self-attention":[128,134],"capsule":[130,167],"networks.":[131],"Specifically,":[132],"confidence":[135],"learning":[136],"module":[137],"is":[138,170],"implemented":[139],"assess":[141],"within":[145],"each":[146],"omic":[147],"assign":[150],"weights":[151],"embedded":[154],"groups,":[158],"resulting":[159],"more":[161],"targeted":[162],"integrated":[163],"information.":[164,243],"Furthermore,":[165],"network":[168],"structure":[169],"employed":[171],"final":[174],"classification":[176,230],"task.":[177],"<i>Result</i>s:":[178],"The":[179,209],"model":[180],"achieved":[181],"strong":[182],"performance":[183],"both":[185],"tasks:":[186],"87.8%":[187],"accuracy":[188,197,231],"BRCA":[191],"multiclassification":[192],"set":[194],"83.6%":[196],"with":[198],"AUC":[200],"88.8%":[202],"LGG":[205],"set.":[207],"<i>Conclusions</i>:":[208],"proposed":[210],"framework":[211],"has":[212],"undergone":[213],"extensive":[214],"testing":[215],"consistently":[220],"proving":[221],"its":[222],"effectiveness":[223],"It":[228],"improves":[229],"while":[232],"enhancing":[233],"interpretability":[235],"results":[237],"by":[238],"fully":[239],"utilizing":[240]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
