{"id":"https://openalex.org/W4403754891","doi":"https://doi.org/10.1021/acs.jcim.4c01907","title":"Natural Language Processing Methods for the Study of Protein\u2013Ligand Interactions","display_name":"Natural Language Processing Methods for the Study of Protein\u2013Ligand Interactions","publication_year":2025,"publication_date":"2025-02-24","ids":{"openalex":"https://openalex.org/W4403754891","doi":"https://doi.org/10.1021/acs.jcim.4c01907","pmid":"https://pubmed.ncbi.nlm.nih.gov/39483353"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.4c01907","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c01907","pdf_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.4c01907?ref=article_openPDF","source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.4c01907?ref=article_openPDF","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109309789","display_name":"J.H. Michels","orcid":null},"institutions":[{"id":"https://openalex.org/I368840534","display_name":"University of Mississippi","ror":"https://ror.org/02teq1165","country_code":"US","type":"education","lineage":["https://openalex.org/I368840534","https://openalex.org/I4210141039"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James Michels","raw_affiliation_strings":["Department of Computer and Information Science","University of Mississippi","Department of Computer and Information Science, University of Mississippi, University, Mississippi 38677, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science","institution_ids":[]},{"raw_affiliation_string":"University of Mississippi","institution_ids":["https://openalex.org/I368840534"]},{"raw_affiliation_string":"Department of Computer and Information Science, University of Mississippi, University, Mississippi 38677, United States","institution_ids":["https://openalex.org/I368840534"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114403226","display_name":"Ramya Bandarupalli","orcid":null},"institutions":[{"id":"https://openalex.org/I368840534","display_name":"University of Mississippi","ror":"https://ror.org/02teq1165","country_code":"US","type":"education","lineage":["https://openalex.org/I368840534","https://openalex.org/I4210141039"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ramya Bandarupalli","raw_affiliation_strings":["Department of BioMolecular Sciences, School of Pharmacy","University of Mississippi","Department of BioMolecular Sciences, School of Pharmacy, University of Mississippi, University, Mississippi 38677, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of BioMolecular Sciences, School of Pharmacy","institution_ids":[]},{"raw_affiliation_string":"University of Mississippi","institution_ids":["https://openalex.org/I368840534"]},{"raw_affiliation_string":"Department of BioMolecular Sciences, School of Pharmacy, University of Mississippi, University, Mississippi 38677, United States","institution_ids":["https://openalex.org/I368840534"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Amin Ahangar Akbari","orcid":null},"institutions":[{"id":"https://openalex.org/I368840534","display_name":"University of Mississippi","ror":"https://ror.org/02teq1165","country_code":"US","type":"education","lineage":["https://openalex.org/I368840534","https://openalex.org/I4210141039"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amin Ahangar Akbari","raw_affiliation_strings":["Department of BioMolecular Sciences, School of Pharmacy","University of Mississippi","Department of BioMolecular Sciences, School of Pharmacy, University of Mississippi, University, Mississippi 38677, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of BioMolecular Sciences, School of Pharmacy","institution_ids":[]},{"raw_affiliation_string":"University of Mississippi","institution_ids":["https://openalex.org/I368840534"]},{"raw_affiliation_string":"Department of BioMolecular Sciences, School of Pharmacy, University of Mississippi, University, Mississippi 38677, United States","institution_ids":["https://openalex.org/I368840534"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024109615","display_name":"Th\u00e1i Ho\u00e0ng L\u00ea","orcid":"https://orcid.org/0000-0002-6801-1924"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I592451","display_name":"Indiana University","ror":"https://ror.org/01kg8sb98","country_code":"US","type":"education","lineage":["https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thai Le","raw_affiliation_strings":["Department of Computer Science","Indiana University","Department of Computer Science, Indiana University, Bloomington, Indiana 47408, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science","institution_ids":[]},{"raw_affiliation_string":"Indiana University","institution_ids":["https://openalex.org/I592451"]},{"raw_affiliation_string":"Department of Computer Science, Indiana University, Bloomington, Indiana 47408, United States","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113748147","display_name":"Hong Xiao","orcid":"https://orcid.org/0000-0002-0823-0877"},"institutions":[{"id":"https://openalex.org/I368840534","display_name":"University of Mississippi","ror":"https://ror.org/02teq1165","country_code":"US","type":"education","lineage":["https://openalex.org/I368840534","https://openalex.org/I4210141039"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hong Xiao","raw_affiliation_strings":["Department of Computer and Information Science and Institute for Data Science","University of Mississippi","Department of Computer and Information Science and Institute for Data Science, University of Mississippi, University, Mississippi 38677, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science and Institute for Data Science","institution_ids":[]},{"raw_affiliation_string":"University of Mississippi","institution_ids":["https://openalex.org/I368840534"]},{"raw_affiliation_string":"Department of Computer and Information Science and Institute for Data Science, University of Mississippi, University, Mississippi 38677, United States","institution_ids":["https://openalex.org/I368840534"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100337102","display_name":"Jing Li","orcid":"https://orcid.org/0000-0003-3277-6818"},"institutions":[{"id":"https://openalex.org/I368840534","display_name":"University of Mississippi","ror":"https://ror.org/02teq1165","country_code":"US","type":"education","lineage":["https://openalex.org/I368840534","https://openalex.org/I4210141039"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jing Li","raw_affiliation_strings":["Department of BioMolecular Sciences, School of Pharmacy","University of Mississippi","Department of BioMolecular Sciences, School of Pharmacy, University of Mississippi, University, Mississippi 38677, United States"],"raw_orcid":"https://orcid.org/0000-0003-3277-6818","affiliations":[{"raw_affiliation_string":"Department of BioMolecular Sciences, School of Pharmacy","institution_ids":[]},{"raw_affiliation_string":"University of Mississippi","institution_ids":["https://openalex.org/I368840534"]},{"raw_affiliation_string":"Department of BioMolecular Sciences, School of Pharmacy, University of Mississippi, University, Mississippi 38677, United States","institution_ids":["https://openalex.org/I368840534"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038334946","display_name":"Erik Hom","orcid":"https://orcid.org/0000-0003-0964-0031"},"institutions":[{"id":"https://openalex.org/I368840534","display_name":"University of Mississippi","ror":"https://ror.org/02teq1165","country_code":"US","type":"education","lineage":["https://openalex.org/I368840534","https://openalex.org/I4210141039"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Erik F. Y. Hom","raw_affiliation_strings":["Department of Biology and Center for Biodiversity and Conservation Research","University of Mississippi","Department of Biology and Center for Biodiversity and Conservation Research, University of Mississippi, University, Mississippi 38677, United States"],"raw_orcid":"https://orcid.org/0000-0003-0964-0031","affiliations":[{"raw_affiliation_string":"Department of Biology and Center for Biodiversity and Conservation Research","institution_ids":[]},{"raw_affiliation_string":"University of Mississippi","institution_ids":["https://openalex.org/I368840534"]},{"raw_affiliation_string":"Department of Biology and Center for Biodiversity and Conservation Research, University of Mississippi, University, Mississippi 38677, United States","institution_ids":["https://openalex.org/I368840534"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5038334946","https://openalex.org/A5100337102","https://openalex.org/A5113748147"],"corresponding_institution_ids":["https://openalex.org/I368840534"],"apc_list":null,"apc_paid":null,"fwci":22.3911,"has_fulltext":true,"cited_by_count":29,"citation_normalized_percentile":{"value":0.99518926,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"65","issue":"5","first_page":"2191","last_page":"2213"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9876000285148621,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ligand","display_name":"Ligand (biochemistry)","score":0.5969607830047607},{"id":"https://openalex.org/keywords/natural","display_name":"Natural (archaeology)","score":0.5379922986030579},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4768989086151123},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.4155419170856476},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4040822982788086},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3228265643119812},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.19598394632339478},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18991973996162415},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.10724472999572754}],"concepts":[{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.5969607830047607},{"id":"https://openalex.org/C2776608160","wikidata":"https://www.wikidata.org/wiki/Q4785462","display_name":"Natural (archaeology)","level":2,"score":0.5379922986030579},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4768989086151123},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.4155419170856476},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4040822982788086},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3228265643119812},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.19598394632339478},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18991973996162415},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.10724472999572754},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.1021/acs.jcim.4c01907","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c01907","pdf_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.4c01907?ref=article_openPDF","source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:39483353","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39483353","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ArXiv","raw_type":null},{"id":"pmid:39993834","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39993834","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:arXiv.org:2409.13057","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2409.13057","pdf_url":"https://arxiv.org/pdf/2409.13057","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:11527106","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11527106","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11527106/pdf/nihpp-2409.13057v2.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ArXiv","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:11898065","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11898065","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Chem Inf Model","raw_type":"Text"},{"id":"doi:10.48550/arxiv.2409.13057","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2409.13057","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"doi:10.1021/acs.jcim.4c01907","is_oa":true,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c01907","pdf_url":"https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.4c01907?ref=article_openPDF","source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.699999988079071,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G1097450139","display_name":"CAREER:  Tempo, Contingency, and Gene Flow in the Coevolution of a Model Microbial Mutualism","funder_award_id":"1846376","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2418057914","display_name":null,"funder_award_id":"1846376","funder_id":"https://openalex.org/F4320337400","funder_display_name":"Division of Environmental Biology"},{"id":"https://openalex.org/G2603938764","display_name":null,"funder_award_id":"P20GM130460","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G3644246701","display_name":null,"funder_award_id":"P20 GM130460","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G6098665000","display_name":null,"funder_award_id":"SB3002 IDS RSG-03","funder_id":"https://openalex.org/F4320309382","funder_display_name":"University of Mississippi"},{"id":"https://openalex.org/G7622606611","display_name":null,"funder_award_id":"P20GM130460","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320309382","display_name":"University of Mississippi","ror":"https://ror.org/02teq1165"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337400","display_name":"Division of Environmental Biology","ror":"https://ror.org/03g87he71"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4403754891.pdf"},"referenced_works_count":237,"referenced_works":["https://openalex.org/W125577685","https://openalex.org/W230577504","https://openalex.org/W616265438","https://openalex.org/W1501531009","https://openalex.org/W1583837637","https://openalex.org/W1586314570","https://openalex.org/W1600771042","https://openalex.org/W1968319881","https://openalex.org/W1968659767","https://openalex.org/W1969422973","https://openalex.org/W1972987731","https://openalex.org/W1975147762","https://openalex.org/W1981100279","https://openalex.org/W1988037271","https://openalex.org/W1994052145","https://openalex.org/W1998000033","https://openalex.org/W1999591184","https://openalex.org/W2005817231","https://openalex.org/W2007956516","https://openalex.org/W2009313526","https://openalex.org/W2020455451","https://openalex.org/W2021259617","https://openalex.org/W2021832765","https://openalex.org/W2026001691","https://openalex.org/W2033377040","https://openalex.org/W2035585923","https://openalex.org/W2052981282","https://openalex.org/W2056957086","https://openalex.org/W2062165740","https://openalex.org/W2062848325","https://openalex.org/W2064675550","https://openalex.org/W2078169925","https://openalex.org/W2079735306","https://openalex.org/W2080209500","https://openalex.org/W2082679953","https://openalex.org/W2086286404","https://openalex.org/W2092285329","https://openalex.org/W2096541451","https://openalex.org/W2096864392","https://openalex.org/W2102245440","https://openalex.org/W2102461176","https://openalex.org/W2122538988","https://openalex.org/W2127553917","https://openalex.org/W2127760066","https://openalex.org/W2130479394","https://openalex.org/W2130938799","https://openalex.org/W2132620282","https://openalex.org/W2137167381","https://openalex.org/W2138337932","https://openalex.org/W2139842115","https://openalex.org/W2143567718","https://openalex.org/W2145860152","https://openalex.org/W2148506018","https://openalex.org/W2155320925","https://openalex.org/W2155749122","https://openalex.org/W2157331557","https://openalex.org/W2159275700","https://openalex.org/W2159628188","https://openalex.org/W2167855619","https://openalex.org/W2169882791","https://openalex.org/W2170146596","https://openalex.org/W2177550115","https://openalex.org/W2266013672","https://openalex.org/W2430084315","https://openalex.org/W2499076232","https://openalex.org/W2530007557","https://openalex.org/W2592262780","https://openalex.org/W2601979355","https://openalex.org/W2743816750","https://openalex.org/W2749279690","https://openalex.org/W2761453842","https://openalex.org/W2765094271","https://openalex.org/W2782561198","https://openalex.org/W2785947426","https://openalex.org/W2786142325","https://openalex.org/W2809216727","https://openalex.org/W2860192827","https://openalex.org/W2884668708","https://openalex.org/W2890648275","https://openalex.org/W2891503716","https://openalex.org/W2895677720","https://openalex.org/W2895951708","https://openalex.org/W2909122342","https://openalex.org/W2911930496","https://openalex.org/W2912459817","https://openalex.org/W2918239264","https://openalex.org/W2943845043","https://openalex.org/W2944973540","https://openalex.org/W2951092885","https://openalex.org/W2951433247","https://openalex.org/W2963751911","https://openalex.org/W2963833291","https://openalex.org/W2963850840","https://openalex.org/W2964199361","https://openalex.org/W2966916628","https://openalex.org/W2969262604","https://openalex.org/W2969996838","https://openalex.org/W2970726176","https://openalex.org/W2973114758","https://openalex.org/W2995514860","https://openalex.org/W2996827397","https://openalex.org/W2999044305","https://openalex.org/W2999089077","https://openalex.org/W3000369508","https://openalex.org/W3001433048","https://openalex.org/W3008191852","https://openalex.org/W3009321976","https://openalex.org/W3016970897","https://openalex.org/W3018972887","https://openalex.org/W3018980093","https://openalex.org/W3019166713","https://openalex.org/W3019745511","https://openalex.org/W3028589594","https://openalex.org/W3029836473","https://openalex.org/W3032123378","https://openalex.org/W3033134881","https://openalex.org/W3034824379","https://openalex.org/W3037888463","https://openalex.org/W3045928028","https://openalex.org/W3081571805","https://openalex.org/W3096561213","https://openalex.org/W3098605233","https://openalex.org/W3103934428","https://openalex.org/W3107618047","https://openalex.org/W3109916301","https://openalex.org/W3117492306","https://openalex.org/W3129531632","https://openalex.org/W3134435812","https://openalex.org/W3137270128","https://openalex.org/W3144701084","https://openalex.org/W3146944767","https://openalex.org/W3155792797","https://openalex.org/W3156083564","https://openalex.org/W3157476473","https://openalex.org/W3160487211","https://openalex.org/W3166925323","https://openalex.org/W3168888942","https://openalex.org/W3175599101","https://openalex.org/W3175786839","https://openalex.org/W3177828909","https://openalex.org/W3180521376","https://openalex.org/W3183248212","https://openalex.org/W3186179742","https://openalex.org/W3187563093","https://openalex.org/W3199799076","https://openalex.org/W3201869122","https://openalex.org/W3202105508","https://openalex.org/W3203077262","https://openalex.org/W3203810337","https://openalex.org/W3206585172","https://openalex.org/W3207323328","https://openalex.org/W3209056694","https://openalex.org/W3214891123","https://openalex.org/W3215957353","https://openalex.org/W3216067893","https://openalex.org/W4200174947","https://openalex.org/W4200547951","https://openalex.org/W4205773061","https://openalex.org/W4206334877","https://openalex.org/W4210460281","https://openalex.org/W4210702584","https://openalex.org/W4210842338","https://openalex.org/W4212863985","https://openalex.org/W4213070269","https://openalex.org/W4220853970","https://openalex.org/W4220872781","https://openalex.org/W4220991280","https://openalex.org/W4221070434","https://openalex.org/W4223414650","https://openalex.org/W4224313467","https://openalex.org/W4225435640","https://openalex.org/W4229590462","https://openalex.org/W4249269859","https://openalex.org/W4281381643","https://openalex.org/W4283390570","https://openalex.org/W4285020367","https://openalex.org/W4285041843","https://openalex.org/W4285175926","https://openalex.org/W4286487916","https://openalex.org/W4289455523","https://openalex.org/W4291288469","https://openalex.org/W4294316568","https://openalex.org/W4294884038","https://openalex.org/W4295886447","https://openalex.org/W4295902325","https://openalex.org/W4295926222","https://openalex.org/W4306149279","https://openalex.org/W4307171284","https://openalex.org/W4310457446","https://openalex.org/W4311540148","https://openalex.org/W4311853817","https://openalex.org/W4313256479","https://openalex.org/W4315641887","https://openalex.org/W4317374308","https://openalex.org/W4317776906","https://openalex.org/W4323304388","https://openalex.org/W4327550249","https://openalex.org/W4361282512","https://openalex.org/W4362664122","https://openalex.org/W4362720950","https://openalex.org/W4365512576","https://openalex.org/W4366090965","https://openalex.org/W4366991255","https://openalex.org/W4367354815","https://openalex.org/W4377094475","https://openalex.org/W4379932252","https://openalex.org/W4382047249","https://openalex.org/W4383216409","https://openalex.org/W4387521430","https://openalex.org/W4387716705","https://openalex.org/W4387772754","https://openalex.org/W4387931067","https://openalex.org/W4388595306","https://openalex.org/W4388924630","https://openalex.org/W4389696354","https://openalex.org/W4390578919","https://openalex.org/W4391685687","https://openalex.org/W4392454655","https://openalex.org/W4393317648","https://openalex.org/W4393870943","https://openalex.org/W4396721167","https://openalex.org/W4396895148","https://openalex.org/W4399708339","https://openalex.org/W4399893452","https://openalex.org/W4400251428","https://openalex.org/W4400370724","https://openalex.org/W4400959602","https://openalex.org/W4401014273","https://openalex.org/W4401966068","https://openalex.org/W4402364312","https://openalex.org/W4402454626","https://openalex.org/W4402809417","https://openalex.org/W4403318777","https://openalex.org/W4403547534","https://openalex.org/W4403728834","https://openalex.org/W4404755712","https://openalex.org/W4405090494"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W2948807893","https://openalex.org/W2899084033","https://openalex.org/W2778153218","https://openalex.org/W2748952813","https://openalex.org/W1531601525","https://openalex.org/W4391375266","https://openalex.org/W2078814861","https://openalex.org/W2527526854","https://openalex.org/W1976181487"],"abstract_inverted_index":{"Natural":[0],"Language":[1],"Processing":[2],"(NLP)":[3],"has":[4],"revolutionized":[5],"the":[6,23,49,95],"way":[7],"computers":[8],"are":[9,92],"used":[10],"to":[11,47,57,85],"study":[12,24],"and":[13,18,27,36,53,74,81,106,123,127],"interact":[14],"with":[15],"human":[16],"languages":[17],"is":[19,31],"increasingly":[20],"influential":[21],"in":[22,102,133],"of":[25,51,97,109,136],"protein":[26,80],"ligand":[28,82],"binding,":[29],"which":[30],"critical":[32],"for":[33],"drug":[34],"discovery":[35],"development.":[37],"This":[38],"review":[39],"examines":[40],"how":[41,64],"NLP":[42],"techniques":[43],"have":[44],"been":[45],"adapted":[46],"decode":[48],"\"language\"":[50],"proteins":[52],"small":[54],"molecule":[55],"ligands":[56],"predict":[58],"protein-ligand":[59],"interactions":[60],"(PLIs).":[61],"We":[62,112],"discuss":[63],"methods":[65],"such":[66],"as":[67],"long":[68],"short-term":[69],"memory":[70],"(LSTM)":[71],"networks,":[72],"transformers,":[73],"attention":[75],"mechanisms":[76],"can":[77],"leverage":[78],"different":[79],"data":[83,118],"types":[84],"identify":[86],"potential":[87],"interaction":[88],"patterns.":[89],"Significant":[90],"challenges":[91],"highlighted,":[93],"including":[94],"scarcity":[96],"high-quality":[98],"negative":[99],"data,":[100],"difficulties":[101],"interpreting":[103],"model":[104,121],"decisions,":[105],"sampling":[107],"biases":[108],"existing":[110],"datasets.":[111],"argue":[113],"that":[114],"focusing":[115],"on":[116],"improving":[117],"quality,":[119],"enhancing":[120],"robustness,":[122],"fostering":[124],"both":[125],"collaboration":[126],"competition":[128],"could":[129],"catalyze":[130],"future":[131],"advances":[132],"machine-learning-based":[134],"predictions":[135],"PLIs.":[137]},"counts_by_year":[{"year":2026,"cited_by_count":19},{"year":2025,"cited_by_count":10}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2024-10-26T00:00:00"}
