{"id":"https://openalex.org/W4404105964","doi":"https://doi.org/10.1021/acs.jcim.4c01839","title":"Exploring the Impact of Physiological C-Terminal Truncation on \u03b1-Synuclein Conformations to Unveil Mechanisms Regulating Pathological Aggregation","display_name":"Exploring the Impact of Physiological C-Terminal Truncation on \u03b1-Synuclein Conformations to Unveil Mechanisms Regulating Pathological Aggregation","publication_year":2024,"publication_date":"2024-11-06","ids":{"openalex":"https://openalex.org/W4404105964","doi":"https://doi.org/10.1021/acs.jcim.4c01839","pmid":"https://pubmed.ncbi.nlm.nih.gov/39504036"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.4c01839","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c01839","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11588551/pdf/nihms-2035004.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010075133","display_name":"Fengjuan Huang","orcid":"https://orcid.org/0000-0003-1846-6725"},"institutions":[{"id":"https://openalex.org/I109935558","display_name":"Ningbo University","ror":"https://ror.org/03et85d35","country_code":"CN","type":"education","lineage":["https://openalex.org/I109935558"]},{"id":"https://openalex.org/I4210113377","display_name":"Ningbo Medical Center Lihuili Hospital","ror":"https://ror.org/030zcqn97","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210113377"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fengjuan Huang","raw_affiliation_strings":["Ningbo Institute of Innovation for Combined Medicine and Engineering (NIIME), The Affiliated Lihuili Hospital of Ningbo University, Ningbo 315211, China"],"affiliations":[{"raw_affiliation_string":"Ningbo Institute of Innovation for Combined Medicine and Engineering (NIIME), The Affiliated Lihuili Hospital of Ningbo University, Ningbo 315211, China","institution_ids":["https://openalex.org/I4210113377","https://openalex.org/I109935558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068186480","display_name":"Jiajia Yan","orcid":null},"institutions":[{"id":"https://openalex.org/I109935558","display_name":"Ningbo University","ror":"https://ror.org/03et85d35","country_code":"CN","type":"education","lineage":["https://openalex.org/I109935558"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiajia Yan","raw_affiliation_strings":["School of Physical Science and Technology, Ningbo University, Ningbo 315211, China"],"affiliations":[{"raw_affiliation_string":"School of Physical Science and Technology, Ningbo University, Ningbo 315211, China","institution_ids":["https://openalex.org/I109935558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104077450","display_name":"Huan Xu","orcid":null},"institutions":[{"id":"https://openalex.org/I109935558","display_name":"Ningbo University","ror":"https://ror.org/03et85d35","country_code":"CN","type":"education","lineage":["https://openalex.org/I109935558"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huan Xu","raw_affiliation_strings":["School of Physical Science and Technology, Ningbo University, Ningbo 315211, China"],"affiliations":[{"raw_affiliation_string":"School of Physical Science and Technology, Ningbo University, Ningbo 315211, China","institution_ids":["https://openalex.org/I109935558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092051722","display_name":"Ying Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I109935558","display_name":"Ningbo University","ror":"https://ror.org/03et85d35","country_code":"CN","type":"education","lineage":["https://openalex.org/I109935558"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ying Wang","raw_affiliation_strings":["School of Physical Science and Technology, Ningbo University, Ningbo 315211, China"],"affiliations":[{"raw_affiliation_string":"School of Physical Science and Technology, Ningbo University, Ningbo 315211, China","institution_ids":["https://openalex.org/I109935558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100431074","display_name":"Xiaohan Zhang","orcid":"https://orcid.org/0000-0002-8263-6904"},"institutions":[{"id":"https://openalex.org/I109935558","display_name":"Ningbo University","ror":"https://ror.org/03et85d35","country_code":"CN","type":"education","lineage":["https://openalex.org/I109935558"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaohan Zhang","raw_affiliation_strings":["School of Physical Science and Technology, Ningbo University, Ningbo 315211, China"],"affiliations":[{"raw_affiliation_string":"School of Physical Science and Technology, Ningbo University, Ningbo 315211, China","institution_ids":["https://openalex.org/I109935558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067817485","display_name":"Yu Zou","orcid":"https://orcid.org/0000-0001-5699-5869"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Zou","raw_affiliation_strings":["Department of Sport and Exercise Science, Zhejiang University, Hangzhou 310058, China"],"affiliations":[{"raw_affiliation_string":"Department of Sport and Exercise Science, Zhejiang University, Hangzhou 310058, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101683471","display_name":"Jiangfang Lian","orcid":"https://orcid.org/0009-0002-5038-2775"},"institutions":[{"id":"https://openalex.org/I109935558","display_name":"Ningbo University","ror":"https://ror.org/03et85d35","country_code":"CN","type":"education","lineage":["https://openalex.org/I109935558"]},{"id":"https://openalex.org/I4210113377","display_name":"Ningbo Medical Center Lihuili Hospital","ror":"https://ror.org/030zcqn97","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210113377"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jiangfang Lian","raw_affiliation_strings":["Ningbo Institute of Innovation for Combined Medicine and Engineering (NIIME), The Affiliated Lihuili Hospital of Ningbo University, Ningbo 315211, China"],"affiliations":[{"raw_affiliation_string":"Ningbo Institute of Innovation for Combined Medicine and Engineering (NIIME), The Affiliated Lihuili Hospital of Ningbo University, Ningbo 315211, China","institution_ids":["https://openalex.org/I4210113377","https://openalex.org/I109935558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100626869","display_name":"Feng Ding","orcid":null},"institutions":[{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Feng Ding","raw_affiliation_strings":["Department of Physics and Astronomy, Clemson University, Clemson, South Carolina 29634, United States"],"affiliations":[{"raw_affiliation_string":"Department of Physics and Astronomy, Clemson University, Clemson, South Carolina 29634, United States","institution_ids":["https://openalex.org/I8078737"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015199573","display_name":"Yunxiang Sun","orcid":"https://orcid.org/0000-0001-9799-7131"},"institutions":[{"id":"https://openalex.org/I109935558","display_name":"Ningbo University","ror":"https://ror.org/03et85d35","country_code":"CN","type":"education","lineage":["https://openalex.org/I109935558"]},{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Yunxiang Sun","raw_affiliation_strings":["Department of Physics and Astronomy, Clemson University, Clemson, South Carolina 29634, United States","School of Physical Science and Technology, Ningbo University, Ningbo 315211, China"],"affiliations":[{"raw_affiliation_string":"Department of Physics and Astronomy, Clemson University, Clemson, South Carolina 29634, United States","institution_ids":["https://openalex.org/I8078737"]},{"raw_affiliation_string":"School of Physical Science and Technology, Ningbo University, Ningbo 315211, China","institution_ids":["https://openalex.org/I109935558"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5015199573","https://openalex.org/A5100626869","https://openalex.org/A5101683471"],"corresponding_institution_ids":["https://openalex.org/I109935558","https://openalex.org/I4210113377","https://openalex.org/I8078737"],"apc_list":null,"apc_paid":null,"fwci":3.5701,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.93780769,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"64","issue":"22","first_page":"8616","last_page":"8627"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10085","display_name":"Parkinson's Disease Mechanisms and Treatments","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2728","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10085","display_name":"Parkinson's Disease Mechanisms and Treatments","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2728","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10086","display_name":"Alzheimer's disease research and treatments","score":0.9538000226020813,"subfield":{"id":"https://openalex.org/subfields/2737","display_name":"Physiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10919","display_name":"Neurological disorders and treatments","score":0.9413999915122986,"subfield":{"id":"https://openalex.org/subfields/2728","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/terminal","display_name":"Terminal (telecommunication)","score":0.6396527290344238},{"id":"https://openalex.org/keywords/truncation","display_name":"Truncation (statistics)","score":0.5460444092750549},{"id":"https://openalex.org/keywords/alpha-synuclein","display_name":"Alpha-synuclein","score":0.5159853100776672},{"id":"https://openalex.org/keywords/pathological","display_name":"Pathological","score":0.5001537799835205},{"id":"https://openalex.org/keywords/protein-aggregation","display_name":"Protein aggregation","score":0.4580300450325012},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.4295845329761505},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.4114454686641693},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.38308805227279663},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32073551416397095},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.3146553039550781},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2492842674255371},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.21408778429031372},{"id":"https://openalex.org/keywords/parkinsons-disease","display_name":"Parkinson's disease","score":0.1733793318271637}],"concepts":[{"id":"https://openalex.org/C2779664074","wikidata":"https://www.wikidata.org/wiki/Q3518405","display_name":"Terminal (telecommunication)","level":2,"score":0.6396527290344238},{"id":"https://openalex.org/C106195933","wikidata":"https://www.wikidata.org/wiki/Q7847935","display_name":"Truncation (statistics)","level":2,"score":0.5460444092750549},{"id":"https://openalex.org/C2781449126","wikidata":"https://www.wikidata.org/wiki/Q288591","display_name":"Alpha-synuclein","level":4,"score":0.5159853100776672},{"id":"https://openalex.org/C207886595","wikidata":"https://www.wikidata.org/wiki/Q1456138","display_name":"Pathological","level":2,"score":0.5001537799835205},{"id":"https://openalex.org/C136238340","wikidata":"https://www.wikidata.org/wiki/Q7251455","display_name":"Protein aggregation","level":2,"score":0.4580300450325012},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.4295845329761505},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.4114454686641693},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.38308805227279663},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32073551416397095},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.3146553039550781},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2492842674255371},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.21408778429031372},{"id":"https://openalex.org/C2779734285","wikidata":"https://www.wikidata.org/wiki/Q11085","display_name":"Parkinson's disease","level":3,"score":0.1733793318271637},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010300","descriptor_name":"Parkinson Disease","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010300","descriptor_name":"Parkinson Disease","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010300","descriptor_name":"Parkinson Disease","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010300","descriptor_name":"Parkinson Disease","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010300","descriptor_name":"Parkinson Disease","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010300","descriptor_name":"Parkinson Disease","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051844","descriptor_name":"alpha-Synuclein","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D051844","descriptor_name":"alpha-Synuclein","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D051844","descriptor_name":"alpha-Synuclein","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D051844","descriptor_name":"alpha-Synuclein","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D051844","descriptor_name":"alpha-Synuclein","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D051844","descriptor_name":"alpha-Synuclein","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D051844","descriptor_name":"alpha-Synuclein","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D051844","descriptor_name":"alpha-Synuclein","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D051844","descriptor_name":"alpha-Synuclein","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D051844","descriptor_name":"alpha-Synuclein","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D051844","descriptor_name":"alpha-Synuclein","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D051844","descriptor_name":"alpha-Synuclein","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066263","descriptor_name":"Protein Aggregation, Pathological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066263","descriptor_name":"Protein Aggregation, Pathological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066263","descriptor_name":"Protein Aggregation, Pathological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066263","descriptor_name":"Protein Aggregation, Pathological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066263","descriptor_name":"Protein Aggregation, Pathological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066263","descriptor_name":"Protein Aggregation, Pathological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066329","descriptor_name":"Protein Aggregates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066329","descriptor_name":"Protein Aggregates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066329","descriptor_name":"Protein Aggregates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066329","descriptor_name":"Protein Aggregates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066329","descriptor_name":"Protein Aggregates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066329","descriptor_name":"Protein Aggregates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1021/acs.jcim.4c01839","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c01839","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:39504036","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39504036","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:europepmc.org:11447538","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11588551","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11588551/pdf/nihms-2035004.pdf","source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:11588551","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11588551/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Chem Inf Model","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:europepmc.org:11447538","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11588551","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11588551/pdf/nihms-2035004.pdf","source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},"sustainable_development_goals":[{"score":0.6700000166893005,"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger"}],"awards":[{"id":"https://openalex.org/G1879373454","display_name":null,"funder_award_id":"2023J","funder_id":"https://openalex.org/F4320332587","funder_display_name":"Natural Science Foundation of Ningbo"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G37568934","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3972124356","display_name":null,"funder_award_id":"2023J078","funder_id":"https://openalex.org/F4320332587","funder_display_name":"Natural Science Foundation of Ningbo"},{"id":"https://openalex.org/G5366165637","display_name":null,"funder_award_id":"11904189","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6600327318","display_name":null,"funder_award_id":"119041","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6774060547","display_name":null,"funder_award_id":"R35GM145409","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G712052062","display_name":null,"funder_award_id":"R35GM145409","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G7211802715","display_name":null,"funder_award_id":"P20GM121342","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G7831941416","display_name":null,"funder_award_id":"P20GM121342","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332587","display_name":"Natural Science Foundation of Ningbo","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4554350417","display_name":"Fundamental Research Funds for the Provincial Universities of Zhejiang","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4404105964.pdf"},"referenced_works_count":80,"referenced_works":["https://openalex.org/W1970577444","https://openalex.org/W1985006546","https://openalex.org/W1994345812","https://openalex.org/W2008708467","https://openalex.org/W2016875890","https://openalex.org/W2023245921","https://openalex.org/W2028635309","https://openalex.org/W2046263328","https://openalex.org/W2050375429","https://openalex.org/W2062443525","https://openalex.org/W2064132534","https://openalex.org/W2067137072","https://openalex.org/W2092192926","https://openalex.org/W2093171209","https://openalex.org/W2096722261","https://openalex.org/W2097758424","https://openalex.org/W2100102456","https://openalex.org/W2107696550","https://openalex.org/W2108257090","https://openalex.org/W2134731229","https://openalex.org/W2138375082","https://openalex.org/W2145727014","https://openalex.org/W2155477793","https://openalex.org/W2163265529","https://openalex.org/W2165779834","https://openalex.org/W2166789153","https://openalex.org/W2317462515","https://openalex.org/W2503377259","https://openalex.org/W2605252223","https://openalex.org/W2730498479","https://openalex.org/W2735416135","https://openalex.org/W2753860285","https://openalex.org/W2793431243","https://openalex.org/W2804964390","https://openalex.org/W2883157135","https://openalex.org/W2884896164","https://openalex.org/W2890980244","https://openalex.org/W2895256968","https://openalex.org/W2897110091","https://openalex.org/W2903960566","https://openalex.org/W2947366776","https://openalex.org/W2984696870","https://openalex.org/W2991301630","https://openalex.org/W3009383630","https://openalex.org/W3025486771","https://openalex.org/W3034164977","https://openalex.org/W3127602688","https://openalex.org/W3136352688","https://openalex.org/W3136598105","https://openalex.org/W3139395934","https://openalex.org/W3208154667","https://openalex.org/W4206672669","https://openalex.org/W4207038055","https://openalex.org/W4220726238","https://openalex.org/W4224214619","https://openalex.org/W4225116277","https://openalex.org/W4283793914","https://openalex.org/W4288384610","https://openalex.org/W4293088587","https://openalex.org/W4293858368","https://openalex.org/W4306757331","https://openalex.org/W4307178925","https://openalex.org/W4310520100","https://openalex.org/W4311218990","https://openalex.org/W4378640276","https://openalex.org/W4378782189","https://openalex.org/W4378976102","https://openalex.org/W4379390680","https://openalex.org/W4385230324","https://openalex.org/W4386008085","https://openalex.org/W4386532366","https://openalex.org/W4387969753","https://openalex.org/W4388153824","https://openalex.org/W4388901029","https://openalex.org/W4390583237","https://openalex.org/W4391218039","https://openalex.org/W4391743587","https://openalex.org/W4400042379","https://openalex.org/W4401506298","https://openalex.org/W4402669371"],"related_works":["https://openalex.org/W3211557223","https://openalex.org/W1528816634","https://openalex.org/W2007036916","https://openalex.org/W2365243064","https://openalex.org/W4206528302","https://openalex.org/W872563264","https://openalex.org/W1974935850","https://openalex.org/W2074350688","https://openalex.org/W2009066363","https://openalex.org/W1964851241"],"abstract_inverted_index":{"Emerging":[0],"evidence":[1],"suggests":[2],"that":[3,82,183],"physiological":[4],"C-terminal":[5,39,59,186,221],"truncation":[6,40,60,222],"of":[7,58,102,116,197,220],"\u03b1-synuclein":[8],"(\u03b1S)":[9],"plays":[10],"a":[11,110],"critical":[12],"role":[13,227],"in":[14,25,98,136,147,173,228],"regulating":[15],"liquid-liquid":[16],"phase":[17,205],"separation":[18],"and":[19,44,85,105,121,139,165,178,207,225],"promoting":[20,229],"amyloid":[21,208],"aggregation,":[22],"processes":[23],"implicated":[24],"neurodegenerative":[26],"diseases":[27],"such":[28],"as":[29],"Parkinson's":[30],"disease":[31],"(PD).":[32],"However,":[33],"the":[34,56,99,103,125,141,145,171,189,193,217],"molecular":[35,76],"mechanisms":[36],"through":[37],"which":[38],"influences":[41],"\u03b1S":[42,62,224],"conformation":[43],"modulates":[45],"its":[46,226],"aggregation":[47],"remain":[48],"poorly":[49],"understood.":[50],"In":[51,156],"this":[52],"study,":[53],"we":[54],"investigated":[55],"impact":[57],"on":[61,188,223],"conformational":[63,218],"dynamics":[64,77],"by":[65,144,170],"comparing":[66],"full-length":[67],"\u03b1S<sub>1-140</sub>":[68,84,117,138,148],"with":[69],"truncated":[70],"\u03b1S<sub>1-103</sub>":[71,86],"monomers":[72],"using":[73],"atomistic":[74],"discrete":[75],"simulations.":[78],"Our":[79],"findings":[80],"revealed":[81],"both":[83,137],"primarily":[87],"adopted":[88],"helical":[89],"conformations":[90],"around":[91,124,153],"residues":[92,95,129,154],"7-32,":[93],"while":[94],"36-95,":[96],"located":[97],"second":[100],"half":[101],"N-terminal":[104],"NAC":[106],"domains,":[107],"predominantly":[108],"formed":[109],"dynamic":[111,142],"\u03b2-sheet":[112,126,151],"core.":[113,127],"The":[114],"C-terminus":[115,146,172],"was":[118],"largely":[119],"unstructured":[120],"dynamically":[122,168],"wrapped":[123],"While":[128],"1-95":[130],"exhibited":[131],"similar":[132],"secondary":[133],"structure":[134],"propensities":[135],"\u03b1S<sub>1-103</sub>,":[140],"capping":[143],"slightly":[149],"enhanced":[150],"formation":[152],"36-95.":[155],"contrast,":[157],"key":[158],"aggregation-driving":[159],"regions":[160],"(residues":[161],"2-9,":[162],"36-42,":[163],"45-57,":[164],"68-78)":[166],"were":[167],"shielded":[169],"\u03b1S<sub>1-140</sub>,":[174],"reducing":[175],"their":[176],"exposure":[177],"potentially":[179],"preventing":[180],"interpeptide":[181,203],"interactions":[182],"drive":[184],"aggregation.":[185,209,231],"truncation,":[187],"other":[190],"hand,":[191],"increased":[192],"exposed":[194],"surface":[195],"area":[196],"these":[198],"aggregation-prone":[199],"regions,":[200],"thereby":[201],"enhancing":[202],"interactions,":[204],"separation,":[206],"Overall,":[210],"our":[211],"simulations":[212],"provide":[213],"valuable":[214],"insights":[215],"into":[216],"effects":[219],"pathological":[230]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":5}],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}
