{"id":"https://openalex.org/W4403886880","doi":"https://doi.org/10.1021/acs.jcim.4c01647","title":"Integrated Knowledge Graph and Drug Molecular Graph Fusion via Adversarial Networks for Drug\u2013Drug Interaction Prediction","display_name":"Integrated Knowledge Graph and Drug Molecular Graph Fusion via Adversarial Networks for Drug\u2013Drug Interaction Prediction","publication_year":2024,"publication_date":"2024-10-30","ids":{"openalex":"https://openalex.org/W4403886880","doi":"https://doi.org/10.1021/acs.jcim.4c01647","pmid":"https://pubmed.ncbi.nlm.nih.gov/39475566"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.4c01647","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c01647","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102790736","display_name":"Yu Li","orcid":"https://orcid.org/0009-0008-8675-1396"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Li","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University, Xi\u2019an710129, China"],"raw_orcid":"https://orcid.org/0009-0008-8675-1396","affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi\u2019an710129, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019805735","display_name":"Zhu\u2010Hong You","orcid":"https://orcid.org/0000-0003-1266-2696"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhu-Hong You","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University, Xi\u2019an710129, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi\u2019an710129, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100713634","display_name":"Yuan Yang","orcid":"https://orcid.org/0000-0002-4417-5553"},"institutions":[{"id":"https://openalex.org/I4210153482","display_name":"Changzhou University","ror":"https://ror.org/04ymgwq66","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210153482"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Yuan","raw_affiliation_strings":["School of Computer Science and Artificial Intelligence, Changzhou University, Changzhou213164, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Artificial Intelligence, Changzhou University, Changzhou213164, China","institution_ids":["https://openalex.org/I4210153482"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037446151","display_name":"Chenggang Mi","orcid":"https://orcid.org/0000-0002-6903-8774"},"institutions":[{"id":"https://openalex.org/I180632629","display_name":"Xi'an International Studies University","ror":"https://ror.org/05gcme754","country_code":"CN","type":"education","lineage":["https://openalex.org/I180632629"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Cheng-Gang Mi","raw_affiliation_strings":["Foreign Language and Literature Institute, Xi\u2019an International Studies University, Xi\u2019an710129, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Foreign Language and Literature Institute, Xi\u2019an International Studies University, Xi\u2019an710129, China","institution_ids":["https://openalex.org/I180632629"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017713277","display_name":"Yu\u2010An Huang","orcid":"https://orcid.org/0000-0002-5346-2394"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu-An Huang","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University, Xi\u2019an710129, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi\u2019an710129, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102010573","display_name":"Hai-Cheng Yi","orcid":"https://orcid.org/0000-0001-8339-396X"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hai-Cheng Yi","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University, Xi\u2019an710129, China"],"raw_orcid":"https://orcid.org/0000-0001-8339-396X","affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi\u2019an710129, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056699322","display_name":"Lin-Xuan Hou","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lin-Xuan Hou","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University, Xi\u2019an710129, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi\u2019an710129, China","institution_ids":["https://openalex.org/I17145004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5019805735"],"corresponding_institution_ids":["https://openalex.org/I17145004"],"apc_list":null,"apc_paid":null,"fwci":0.5764,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.70809605,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":"64","issue":"21","first_page":"8361","last_page":"8372"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.972599983215332,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9591000080108643,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.7636016607284546},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5719804763793945},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5445733666419983},{"id":"https://openalex.org/keywords/adversarial-system","display_name":"Adversarial system","score":0.42414945363998413},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3936816155910492},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3649017810821533},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.27743858098983765},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.24245041608810425},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2025417685508728}],"concepts":[{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.7636016607284546},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5719804763793945},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5445733666419983},{"id":"https://openalex.org/C37736160","wikidata":"https://www.wikidata.org/wiki/Q1801315","display_name":"Adversarial system","level":2,"score":0.42414945363998413},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3936816155910492},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3649017810821533},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.27743858098983765},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.24245041608810425},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2025417685508728}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.4c01647","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c01647","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:39475566","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39475566","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3639475604","display_name":null,"funder_award_id":"62325308","funder_id":"https://openalex.org/F4320336125","funder_display_name":"National Science Fund for Distinguished Young Scholars"}],"funders":[{"id":"https://openalex.org/F4320336125","display_name":"National Science Fund for Distinguished Young Scholars","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W2036291018","https://openalex.org/W2091439417","https://openalex.org/W2106417713","https://openalex.org/W2117397379","https://openalex.org/W2119002393","https://openalex.org/W2135037015","https://openalex.org/W2591704587","https://openalex.org/W2605325415","https://openalex.org/W2625343706","https://openalex.org/W2786016794","https://openalex.org/W2802200505","https://openalex.org/W2911489562","https://openalex.org/W2972392269","https://openalex.org/W2997021962","https://openalex.org/W3011072970","https://openalex.org/W3035011799","https://openalex.org/W3088680691","https://openalex.org/W3089843526","https://openalex.org/W3095775920","https://openalex.org/W3108458441","https://openalex.org/W3139253280","https://openalex.org/W3157889929","https://openalex.org/W3206046197","https://openalex.org/W3208102118","https://openalex.org/W4205463297","https://openalex.org/W4205478771","https://openalex.org/W4213069590","https://openalex.org/W4214621766","https://openalex.org/W4214932602","https://openalex.org/W4281850946","https://openalex.org/W4298255586","https://openalex.org/W4307093167","https://openalex.org/W4309400060","https://openalex.org/W4310332460","https://openalex.org/W4388034303","https://openalex.org/W4391361452","https://openalex.org/W6607506374"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3107602296","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W4364306694","https://openalex.org/W4312192474","https://openalex.org/W4283697347"],"abstract_inverted_index":{"The":[0,131],"Co-administration":[1],"of":[2,9,25,114,124,187,254],"multiple":[3],"drugs":[4,115],"can":[5],"enhance":[6],"the":[7,23,71,105,112,117,122,155,168,176,195,205,250],"efficacy":[8],"disease":[10],"treatment":[11],"by":[12,45],"reducing":[13],"drug":[14,27,51,75],"resistance":[15],"and":[16,50,74,129,139,146,157,164,209,238,252],"side":[17],"effects.":[18],"However,":[19],"it":[20],"also":[21],"raises":[22],"risk":[24],"adverse":[26],"interactions,":[28],"presenting":[29],"a":[30,80,94],"challenging":[31],"problem":[32],"in":[33,70,116,142,182,189,192,202,211,228,231,235,240,257],"healthcare.":[34],"Various":[35],"approaches":[36],"have":[37,57,173],"been":[38],"developed":[39],"to":[40,63,98,110,153,248],"predict":[41],"drug-drug":[42],"interactions":[43],"(DDIs)":[44],"leveraging":[46],"both":[47],"knowledge":[48,72,118,143,159,169],"graphs":[49],"attribute":[52],"information.":[53],"While":[54],"these":[55],"methods":[56],"shown":[58],"promise,":[59],"they":[60],"often":[61],"fail":[62],"effectively":[64],"capture":[65,99,111,154],"correlations":[66],"between":[67,160],"biomedical":[68],"information":[69,102,163,166],"graph":[73,107,119,144],"properties.":[76],"This":[77,91],"work":[78],"introduces":[79],"novel":[81],"end-to-end":[82],"DDI":[83,258],"predictor":[84],"framework":[85,92],"based":[86],"on":[87],"generative":[88,133],"adversarial":[89,134,151],"networks.":[90],"utilizes":[93],"message-passing":[95],"neural":[96],"network":[97,109],"molecular":[100,147,161],"structure":[101,162],"while":[103],"employing":[104],"knowledge-aware":[106],"attention":[108],"representation":[113],"through":[120],"considering":[121],"importance":[123],"different":[125],"multihop":[126],"neighbor":[127],"nodes":[128],"relationships.":[130],"dual":[132],"networks":[135],"employ":[136],"two":[137,140],"generators":[138],"discriminators":[141],"embedding":[145,149],"topology":[148],"for":[150,215],"training":[152],"interrelations":[156],"complementary":[158],"semantic":[165],"from":[167],"graph.":[170],"comprehensive":[171],"experiments":[172],"demonstrated":[174],"that":[175],"proposed":[177],"method":[178,256],"outperforms":[179],"state-of-the-art":[180],"algorithms":[181],"binary":[183],"classification,":[184],"with":[185],"improvements":[186,219],"1.0%":[188],"accuracy,":[190,229],"0.45%":[191],"area":[193,203],"under":[194,204],"receiver":[196],"operating":[197],"characteristic":[198],"curve":[199,207],"(AUC),":[200],"0.24%":[201],"precision-recall":[206],"(AUPR),":[208],"0.98%":[210],"F1":[212],"score.":[213],"Furthermore,":[214],"multiclass":[216],"classification":[217],"tasks,":[218],"were":[220,246],"observed":[221],"across":[222],"various":[223],"evaluation":[224],"metrics,":[225],"including":[226],"0.9%":[227],"0.25%":[230],"macro":[232,236,241],"precision,":[233],"0.2%":[234],"recall,":[237],"0.28%":[239],"F1.":[242],"Additionally,":[243],"ablation":[244],"studies":[245],"conducted":[247],"showcase":[249],"effectiveness":[251],"robustness":[253],"our":[255],"prediction":[259],"tasks.":[260]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
