{"id":"https://openalex.org/W4404609018","doi":"https://doi.org/10.1021/acs.jcim.4c01599","title":"UniBioPAN: A Novel Universal Classification Architecture for Bioactive Peptides Inspired by Video Action Recognition","display_name":"UniBioPAN: A Novel Universal Classification Architecture for Bioactive Peptides Inspired by Video Action Recognition","publication_year":2024,"publication_date":"2024-11-21","ids":{"openalex":"https://openalex.org/W4404609018","doi":"https://doi.org/10.1021/acs.jcim.4c01599","pmid":"https://pubmed.ncbi.nlm.nih.gov/39571078"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.4c01599","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c01599","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065659163","display_name":"Ruihong Wang","orcid":"https://orcid.org/0000-0003-4057-4941"},"institutions":[{"id":"https://openalex.org/I158842170","display_name":"Chongqing University","ror":"https://ror.org/023rhb549","country_code":"CN","type":"education","lineage":["https://openalex.org/I158842170"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruihong Wang","raw_affiliation_strings":["Key Laboratory of Biorheological Science and Technology (Chongqing University), Ministry of Education, Bioengineering College, Chongqing University, Chongqing 400044, China"],"raw_orcid":"https://orcid.org/0000-0003-4057-4941","affiliations":[{"raw_affiliation_string":"Key Laboratory of Biorheological Science and Technology (Chongqing University), Ministry of Education, Bioengineering College, Chongqing University, Chongqing 400044, China","institution_ids":["https://openalex.org/I158842170"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006086141","display_name":"Xiao Liang","orcid":"https://orcid.org/0000-0002-9423-9201"},"institutions":[{"id":"https://openalex.org/I158842170","display_name":"Chongqing University","ror":"https://ror.org/023rhb549","country_code":"CN","type":"education","lineage":["https://openalex.org/I158842170"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiao Liang","raw_affiliation_strings":["Key Laboratory of Biorheological Science and Technology (Chongqing University), Ministry of Education, Bioengineering College, Chongqing University, Chongqing 400044, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Biorheological Science and Technology (Chongqing University), Ministry of Education, Bioengineering College, Chongqing University, Chongqing 400044, China","institution_ids":["https://openalex.org/I158842170"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101782256","display_name":"Yi Zhao","orcid":"https://orcid.org/0000-0001-5619-8966"},"institutions":[{"id":"https://openalex.org/I158842170","display_name":"Chongqing University","ror":"https://ror.org/023rhb549","country_code":"CN","type":"education","lineage":["https://openalex.org/I158842170"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yi Zhao","raw_affiliation_strings":["Key Laboratory of Biorheological Science and Technology (Chongqing University), Ministry of Education, Bioengineering College, Chongqing University, Chongqing 400044, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Biorheological Science and Technology (Chongqing University), Ministry of Education, Bioengineering College, Chongqing University, Chongqing 400044, China","institution_ids":["https://openalex.org/I158842170"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100383644","display_name":"W. Xue","orcid":"https://orcid.org/0009-0001-8030-1481"},"institutions":[{"id":"https://openalex.org/I158842170","display_name":"Chongqing University","ror":"https://ror.org/023rhb549","country_code":"CN","type":"education","lineage":["https://openalex.org/I158842170"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenjun Xue","raw_affiliation_strings":["Key Laboratory of Biorheological Science and Technology (Chongqing University), Ministry of Education, Bioengineering College, Chongqing University, Chongqing 400044, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Biorheological Science and Technology (Chongqing University), Ministry of Education, Bioengineering College, Chongqing University, Chongqing 400044, China","institution_ids":["https://openalex.org/I158842170"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054540808","display_name":"Guizhao Liang","orcid":"https://orcid.org/0000-0003-2293-6662"},"institutions":[{"id":"https://openalex.org/I158842170","display_name":"Chongqing University","ror":"https://ror.org/023rhb549","country_code":"CN","type":"education","lineage":["https://openalex.org/I158842170"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Guizhao Liang","raw_affiliation_strings":["Bioengineering College of Chongqing University, No. 174, Shazheng Street, Shapingba District, Chongqing 400030, China","Key Laboratory of Biorheological Science and Technology (Chongqing University), Ministry of Education, Bioengineering College, Chongqing University, Chongqing 400044, China"],"raw_orcid":"https://orcid.org/0000-0003-2293-6662","affiliations":[{"raw_affiliation_string":"Bioengineering College of Chongqing University, No. 174, Shazheng Street, Shapingba District, Chongqing 400030, China","institution_ids":["https://openalex.org/I158842170"]},{"raw_affiliation_string":"Key Laboratory of Biorheological Science and Technology (Chongqing University), Ministry of Education, Bioengineering College, Chongqing University, Chongqing 400044, China","institution_ids":["https://openalex.org/I158842170"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5054540808"],"corresponding_institution_ids":["https://openalex.org/I158842170"],"apc_list":null,"apc_paid":null,"fwci":0.2671,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.60507173,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"64","issue":"24","first_page":"9276","last_page":"9285"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7420834302902222},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.6667913794517517},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.6476569771766663},{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.6213573813438416},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.6058987975120544},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5391983985900879},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.5059642195701599},{"id":"https://openalex.org/keywords/feature-extraction","display_name":"Feature extraction","score":0.42121654748916626},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.39338821172714233},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3418307304382324},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11912623047828674},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10694530606269836}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7420834302902222},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.6667913794517517},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.6476569771766663},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.6213573813438416},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.6058987975120544},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5391983985900879},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.5059642195701599},{"id":"https://openalex.org/C52622490","wikidata":"https://www.wikidata.org/wiki/Q1026626","display_name":"Feature extraction","level":2,"score":0.42121654748916626},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.39338821172714233},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3418307304382324},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11912623047828674},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10694530606269836},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014741","descriptor_name":"Video Recording","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014741","descriptor_name":"Video Recording","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014741","descriptor_name":"Video Recording","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.4c01599","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.4c01599","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:39571078","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39571078","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.41999998688697815,"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2"}],"awards":[{"id":"https://openalex.org/G5361774884","display_name":null,"funder_award_id":"32172196","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W2029667189","https://openalex.org/W2132525235","https://openalex.org/W2517194566","https://openalex.org/W2757304468","https://openalex.org/W2799876761","https://openalex.org/W2884561390","https://openalex.org/W2889326414","https://openalex.org/W2919115771","https://openalex.org/W2971013993","https://openalex.org/W2996266725","https://openalex.org/W3001644051","https://openalex.org/W3001942526","https://openalex.org/W3019103367","https://openalex.org/W3088459654","https://openalex.org/W3113134891","https://openalex.org/W3138516234","https://openalex.org/W3145990216","https://openalex.org/W3146944767","https://openalex.org/W3154086429","https://openalex.org/W3159177617","https://openalex.org/W3166412288","https://openalex.org/W3168997536","https://openalex.org/W3175863350","https://openalex.org/W3177500196","https://openalex.org/W3183475563","https://openalex.org/W3200707343","https://openalex.org/W3209540366","https://openalex.org/W3212983993","https://openalex.org/W4200160019","https://openalex.org/W4205773061","https://openalex.org/W4220694746","https://openalex.org/W4285731555","https://openalex.org/W4308052938","https://openalex.org/W4309218736","https://openalex.org/W4309425098","https://openalex.org/W4317605876","https://openalex.org/W4318263137","https://openalex.org/W4324030730","https://openalex.org/W4327550249","https://openalex.org/W4362657509","https://openalex.org/W4384561707","https://openalex.org/W4386968677","https://openalex.org/W4389450648","https://openalex.org/W4396730528"],"related_works":["https://openalex.org/W2341492732","https://openalex.org/W3187193180","https://openalex.org/W106542691","https://openalex.org/W1699080303","https://openalex.org/W4297799326","https://openalex.org/W3116064965","https://openalex.org/W4287027380","https://openalex.org/W3193760048","https://openalex.org/W4285822516","https://openalex.org/W2505261959"],"abstract_inverted_index":{"The":[0,44],"classification":[1,74,92,141],"of":[2,6,18,58,150,156],"bioactive":[3,151],"peptides":[4,152],"is":[5,14,117,134],"great":[7],"importance":[8,146],"in":[9,62,100,112,119,147],"protein":[10],"biology,":[11],"but":[12],"there":[13],"still":[15],"a":[16,19,36,51,67,89,135],"lack":[17],"universal":[20,37,98],"and":[21,54,73,84,103,109,127,138,153,162],"effective":[22],"classifier.":[23],"Inspired":[24],"by":[25],"video":[26,52,68],"action":[27],"recognition,":[28],"we":[29],"developed":[30],"the":[31,47,55,63,148,154,160],"UniBioPAN":[32,94,116,133,143],"architecture":[33,45,99],"to":[34,40],"create":[35],"peptide":[38,48,64,91,140,157],"classifier":[39],"solve":[41],"this":[42],"problem.":[43],"treats":[46],"sequence":[49,53,65],"as":[50,66],"molecular":[56],"image":[57],"each":[59],"amino":[60],"acid":[61],"frame,":[69],"enabling":[70],"feature":[71],"extraction":[72],"using":[75],"convolutional":[76],"neural":[77],"networks,":[78,83],"bidirectional":[79],"long":[80],"short-term":[81],"memory":[82],"fully":[85],"connected":[86],"networks.":[87],"As":[88],"novel":[90],"architecture,":[93],"significantly":[95],"outperforms":[96],"other":[97],"ACC,":[101],"AUC":[102],"MCC":[104],"across":[105],"11":[106],"data":[107,114,163],"sets,":[108],"F1":[110],"score":[111],"9":[113],"sets.":[115],"available":[118,167],"three":[120],"ways:":[121],"python":[122],"script,":[123],"jupyter":[124],"notebook":[125],"script":[126],"web":[128],"server":[129],"(https://gzliang.cqu.edu.cn/software/UniBioPAN.html).":[130],"In":[131],"summary,":[132],"universal,":[136],"convenient,":[137],"high-performance":[139],"architecture.":[142],"holds":[144],"significant":[145],"discovery":[149],"advancement":[155],"classifiers.":[158],"All":[159],"codes":[161],"sets":[164],"are":[165],"publicly":[166],"at":[168],"https://github.com/sanwrh/UniBioPAN.":[169]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-06-14T06:11:07.267592","created_date":"2025-10-10T00:00:00"}
